RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 CCDC129Q6ZRS4 1044 aa21.98■■□□□ 1.11
SHKBP1-201ENST00000291842 ZNF330Q9Y3S2 320 aaPredicted RBP21.98■■□□□ 1.11
SHKBP1-201ENST00000291842 MED23Q9ULK4 1368 aa21.98■■□□□ 1.11
SHKBP1-201ENST00000291842 H7C1W4 665 aa21.97■■□□□ 1.11
SHKBP1-201ENST00000291842 DDX46Q7L014 1031 aaKnown RBP21.97■■□□□ 1.11
SHKBP1-201ENST00000291842 SEC62Q99442 399 aaKnown RBP21.97■■□□□ 1.11
SHKBP1-201ENST00000291842 SNRKQ9NRH2 765 aa21.97■■□□□ 1.11
SHKBP1-201ENST00000291842 COL5A2P05997 1499 aaPredicted RBP21.97■■□□□ 1.11
SHKBP1-201ENST00000291842 ERVV-2B6SEH9 535 aa21.97■■□□□ 1.11
SHKBP1-201ENST00000291842 NEUROD6Q96NK8 337 aa21.97■■□□□ 1.11
SHKBP1-201ENST00000291842 CWC25Q9NXE8 425 aaPredicted RBP21.97■■□□□ 1.11
SHKBP1-201ENST00000291842 COL15A1P39059 1388 aa21.96■■□□□ 1.11
SHKBP1-201ENST00000291842 PLEKHG2Q9H7P9 1386 aa21.96■■□□□ 1.11
SHKBP1-201ENST00000291842 PPP1R9BQ96SB3 815 aa21.96■■□□□ 1.11
SHKBP1-201ENST00000291842 ZNF335Q9H4Z2 1342 aaPredicted RBP21.96■■□□□ 1.11
SHKBP1-201ENST00000291842 TAF5LO75529 589 aa21.96■■□□□ 1.11
SHKBP1-201ENST00000291842 F13A1P00488 732 aa21.96■■□□□ 1.11
SHKBP1-201ENST00000291842 EVA1CP58658 441 aa21.96■■□□□ 1.11
SHKBP1-201ENST00000291842 RNF214Q8ND24 703 aa21.96■■□□□ 1.11
SHKBP1-201ENST00000291842 ZNF594Q96JF6 807 aaPredicted RBP21.96■■□□□ 1.11
SHKBP1-201ENST00000291842 ZSCAN31Q96LW9 406 aaPredicted RBP21.96■■□□□ 1.11
SHKBP1-201ENST00000291842 SOS2Q07890 1332 aaPredicted RBP21.95■■□□□ 1.11
SHKBP1-201ENST00000291842 CLCN1P35523 988 aa21.95■■□□□ 1.1
SHKBP1-201ENST00000291842 TIMM10P62072 90 aa21.95■■□□□ 1.1
SHKBP1-201ENST00000291842 RNF20Q5VTR2 975 aa21.95■■□□□ 1.1
SHKBP1-201ENST00000291842 BLOC1S2Q6QNY1 142 aa21.95■■□□□ 1.1
SHKBP1-201ENST00000291842 SH2B1Q9NRF2 756 aaPredicted RBP21.95■■□□□ 1.1
SHKBP1-201ENST00000291842 LAMB4A4D0S4 1761 aa21.95■■□□□ 1.1
SHKBP1-201ENST00000291842 PSMA5P28066 241 aa21.95■■□□□ 1.1
SHKBP1-201ENST00000291842 SLFNL1Q499Z3 407 aa21.95■■□□□ 1.1
SHKBP1-201ENST00000291842 FIBPO43427 364 aa21.94■■□□□ 1.1
SHKBP1-201ENST00000291842 VPS37CA5D8V6 355 aaPredicted RBP21.94■■□□□ 1.1
SHKBP1-201ENST00000291842 ATG9AQ7Z3C6 839 aa21.94■■□□□ 1.1
SHKBP1-201ENST00000291842 PARP4Q9UKK3 1724 aaKnown RBP21.93■■□□□ 1.1
SHKBP1-201ENST00000291842 LRRC24Q50LG9 513 aa21.93■■□□□ 1.1
SHKBP1-201ENST00000291842 CARD10Q9BWT7 1032 aa21.93■■□□□ 1.1
SHKBP1-201ENST00000291842 HAUS7Q99871 368 aa21.92■■□□□ 1.1
SHKBP1-201ENST00000291842 MTMR6Q9Y217 621 aa21.92■■□□□ 1.1
SHKBP1-201ENST00000291842 ZNF609O15014 1411 aa21.92■■□□□ 1.1
SHKBP1-201ENST00000291842 KCPQ6ZWJ8 1503 aa21.92■■□□□ 1.1
SHKBP1-201ENST00000291842 RPS6KB1P23443 525 aa21.92■■□□□ 1.1
SHKBP1-201ENST00000291842 STK3Q13188 491 aa21.92■■□□□ 1.1
SHKBP1-201ENST00000291842 NKX1-1Q15270 411 aaPredicted RBP21.92■■□□□ 1.1
SHKBP1-201ENST00000291842 DNM1Q05193 864 aaKnown RBP21.91■■□□□ 1.1
SHKBP1-201ENST00000291842 GOLIM4O00461 696 aa21.9■■□□□ 1.1
SHKBP1-201ENST00000291842 TOB2Q14106 344 aaPredicted RBP21.9■■□□□ 1.1
SHKBP1-201ENST00000291842 SYAP1Q96A49 352 aaPredicted RBP21.9■■□□□ 1.1
SHKBP1-201ENST00000291842 CCDC85AQ96PX6 553 aaPredicted RBP21.9■■□□□ 1.1
SHKBP1-201ENST00000291842 PUS3Q9BZE2 481 aaKnown RBP21.9■■□□□ 1.1
SHKBP1-201ENST00000291842 LARP1BQ659C4 914 aaKnown RBP21.89■■□□□ 1.09
SHKBP1-201ENST00000291842 TMEM87AQ8NBN3 555 aa21.89■■□□□ 1.09
SHKBP1-201ENST00000291842 CCDC191Q8NCU4 936 aa21.89■■□□□ 1.09
SHKBP1-201ENST00000291842 JCADQ9P266 1359 aa21.88■■□□□ 1.09
SHKBP1-201ENST00000291842 MCMDC2Q4G0Z9 681 aa21.88■■□□□ 1.09
SHKBP1-201ENST00000291842 FERMT3Q86UX7 667 aa21.88■■□□□ 1.09
SHKBP1-201ENST00000291842 TSPY26PQ9H489 355 aa21.88■■□□□ 1.09
SHKBP1-201ENST00000291842 TMOD3Q9NYL9 352 aa21.88■■□□□ 1.09
SHKBP1-201ENST00000291842 HMG20BQ9P0W2 317 aa21.88■■□□□ 1.09
SHKBP1-201ENST00000291842 ASAP1Q9ULH1 1129 aa21.88■■□□□ 1.09
SHKBP1-201ENST00000291842 UBR2Q8IWV8 1755 aa21.88■■□□□ 1.09
SHKBP1-201ENST00000291842 USPL1Q5W0Q7 1092 aa21.88■■□□□ 1.09
SHKBP1-201ENST00000291842 ATP6V1DQ9Y5K8 247 aa21.88■■□□□ 1.09
SHKBP1-201ENST00000291842 KBTBD3Q8NAB2 608 aa21.87■■□□□ 1.09
SHKBP1-201ENST00000291842 NUP188Q5SRE5 1749 aa21.87■■□□□ 1.09
SHKBP1-201ENST00000291842 PAG1Q9NWQ8 432 aa21.87■■□□□ 1.09
SHKBP1-201ENST00000291842 EYA2O00167 538 aa21.86■■□□□ 1.09
SHKBP1-201ENST00000291842 CYP21A2P08686 494 aa21.86■■□□□ 1.09
SHKBP1-201ENST00000291842 IL15P40933 162 aaPredicted RBP21.86■■□□□ 1.09
SHKBP1-201ENST00000291842 ANKRD1Q15327 319 aa21.86■■□□□ 1.09
SHKBP1-201ENST00000291842 FAM173BQ6P4H8 233 aa21.86■■□□□ 1.09
SHKBP1-201ENST00000291842 CDC37L1Q7L3B6 337 aa21.86■■□□□ 1.09
SHKBP1-201ENST00000291842 TSGA10IPQ3SY00 556 aa21.85■■□□□ 1.09
SHKBP1-201ENST00000291842 NEK1Q96PY6 1258 aa21.85■■□□□ 1.09
SHKBP1-201ENST00000291842 LRRC2Q9BYS8 371 aa21.85■■□□□ 1.09
SHKBP1-201ENST00000291842 TJP1Q07157 1748 aa21.85■■□□□ 1.09
SHKBP1-201ENST00000291842 UBE2HP62256 183 aa21.85■■□□□ 1.09
SHKBP1-201ENST00000291842 DNAJC10Q8IXB1 793 aa21.85■■□□□ 1.09
SHKBP1-201ENST00000291842 A0A1B0GUL7 405 aa21.84■■□□□ 1.09
SHKBP1-201ENST00000291842 FAM89AQ96GI7 184 aa21.84■■□□□ 1.09
SHKBP1-201ENST00000291842 SHANK3Q9BYB0 1731 aa21.84■■□□□ 1.09
SHKBP1-201ENST00000291842 PIGBQ92521 554 aa21.84■■□□□ 1.09
SHKBP1-201ENST00000291842 Q6ZUG5 572 aa21.83■■□□□ 1.09
SHKBP1-201ENST00000291842 PDLIM2Q96JY6 352 aa21.83■■□□□ 1.09
SHKBP1-201ENST00000291842 U3KPZ7 1027 aaPredicted RBP21.83■■□□□ 1.09
SHKBP1-201ENST00000291842 PHF14O94880 888 aa21.83■■□□□ 1.08
SHKBP1-201ENST00000291842 TCIRG1Q13488 830 aa21.83■■□□□ 1.08
SHKBP1-201ENST00000291842 CCDC183Q5T5S1 534 aa21.83■■□□□ 1.08
SHKBP1-201ENST00000291842 TNS2Q63HR2 1409 aa21.83■■□□□ 1.08
SHKBP1-201ENST00000291842 A0A0G2JLW4 131 aa21.82■■□□□ 1.08
SHKBP1-201ENST00000291842 IFIT1P09914 478 aaKnown RBP21.82■■□□□ 1.08
SHKBP1-201ENST00000291842 KRT32Q14532 448 aa21.82■■□□□ 1.08
SHKBP1-201ENST00000291842 SYNE4Q8N205 404 aa21.82■■□□□ 1.08
SHKBP1-201ENST00000291842 ISCA1Q9BUE6 129 aa21.82■■□□□ 1.08
SHKBP1-201ENST00000291842 BTG4Q9NY30 223 aa21.82■■□□□ 1.08
SHKBP1-201ENST00000291842 STRCQ7RTU9 1775 aa21.82■■□□□ 1.08
SHKBP1-201ENST00000291842 PAPPAQ13219 1627 aa21.82■■□□□ 1.08
SHKBP1-201ENST00000291842 CCDC57Q2TAC2 916 aa21.82■■□□□ 1.08
SHKBP1-201ENST00000291842 STOX1Q6ZVD7 989 aa21.82■■□□□ 1.08
SHKBP1-201ENST00000291842 ZSCAN30Q86W11 494 aa21.82■■□□□ 1.08
SHKBP1-201ENST00000291842 NAP1L5Q96NT1 182 aaPredicted RBP21.82■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms