RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 NEK4P51957 841 aa20.13■□□□□ 0.81
CCDC40-201ENST00000269318 KIAA1211Q6ZU35 1233 aa20.13■□□□□ 0.81
CCDC40-201ENST00000269318 SMARCC1Q92922 1105 aaPredicted RBP20.13■□□□□ 0.81
CCDC40-201ENST00000269318 PUS3Q9BZE2 481 aaKnown RBP20.13■□□□□ 0.81
CCDC40-201ENST00000269318 ZNF831Q5JPB2 1677 aa20.13■□□□□ 0.81
CCDC40-201ENST00000269318 UBN2Q6ZU65 1347 aa20.13■□□□□ 0.81
CCDC40-201ENST00000269318 FOXD4L1Q9NU39 408 aa20.12■□□□□ 0.81
CCDC40-201ENST00000269318 NMIQ13287 307 aaPredicted RBP20.12■□□□□ 0.81
CCDC40-201ENST00000269318 FAM227BQ96M60 508 aa20.12■□□□□ 0.81
CCDC40-201ENST00000269318 HAUS7Q99871 368 aa20.12■□□□□ 0.81
CCDC40-201ENST00000269318 FSD1Q9BTV5 496 aa20.12■□□□□ 0.81
CCDC40-201ENST00000269318 MYH14Q7Z406 1995 aaKnown RBP20.11■□□□□ 0.81
CCDC40-201ENST00000269318 RFX7Q2KHR2 1363 aa20.11■□□□□ 0.81
CCDC40-201ENST00000269318 COL5A3P25940 1745 aaPredicted RBP20.11■□□□□ 0.81
CCDC40-201ENST00000269318 THSD7AQ9UPZ6 1657 aa20.1■□□□□ 0.81
CCDC40-201ENST00000269318 MCM2P49736 904 aa20.1■□□□□ 0.81
CCDC40-201ENST00000269318 PTH1RQ03431 593 aa20.1■□□□□ 0.81
CCDC40-201ENST00000269318 IL27Q8NEV9 243 aa20.1■□□□□ 0.81
CCDC40-201ENST00000269318 TTLL11Q8NHH1 800 aa20.1■□□□□ 0.81
CCDC40-201ENST00000269318 EDC3Q96F86 508 aaKnown RBP20.1■□□□□ 0.81
CCDC40-201ENST00000269318 SNX14Q9Y5W7 946 aa20.1■□□□□ 0.81
CCDC40-201ENST00000269318 TIMM10P62072 90 aa20.1■□□□□ 0.81
CCDC40-201ENST00000269318 RAB3GAP1Q15042 981 aa20.1■□□□□ 0.81
CCDC40-201ENST00000269318 TRMT112Q9UI30 125 aaKnown RBP20.1■□□□□ 0.81
CCDC40-201ENST00000269318 USP21Q9UK80 565 aa20.1■□□□□ 0.81
CCDC40-201ENST00000269318 MED23Q9ULK4 1368 aa20.1■□□□□ 0.81
CCDC40-201ENST00000269318 A0A0D9SFI3 127 aa20.09■□□□□ 0.81
CCDC40-201ENST00000269318 IRS4O14654 1257 aaPredicted RBP20.09■□□□□ 0.81
CCDC40-201ENST00000269318 CAMTA2O94983 1202 aa20.09■□□□□ 0.81
CCDC40-201ENST00000269318 CTSWP56202 376 aa20.09■□□□□ 0.81
CCDC40-201ENST00000269318 IFIT5Q13325 482 aaKnown RBP20.09■□□□□ 0.81
CCDC40-201ENST00000269318 RASEFQ8IZ41 740 aa20.09■□□□□ 0.81
CCDC40-201ENST00000269318 FBXO41Q8TF61 875 aa20.09■□□□□ 0.81
CCDC40-201ENST00000269318 CCDC85AQ96PX6 553 aaPredicted RBP20.09■□□□□ 0.81
CCDC40-201ENST00000269318 KCNB2Q92953 911 aa20.08■□□□□ 0.81
CCDC40-201ENST00000269318 NEUROD6Q96NK8 337 aa20.08■□□□□ 0.81
CCDC40-201ENST00000269318 CCDC171Q6TFL3 1326 aa20.08■□□□□ 0.81
CCDC40-201ENST00000269318 A0A1B0GUL7 405 aa20.08■□□□□ 0.8
CCDC40-201ENST00000269318 GREM2Q9H772 168 aa20.08■□□□□ 0.8
CCDC40-201ENST00000269318 CEP126Q9P2H0 1117 aa20.08■□□□□ 0.8
CCDC40-201ENST00000269318 MYH3P11055 1940 aa20.08■□□□□ 0.8
CCDC40-201ENST00000269318 CERKQ8TCT0 537 aa20.07■□□□□ 0.8
CCDC40-201ENST00000269318 NDUFB9Q9Y6M9 179 aa20.07■□□□□ 0.8
CCDC40-201ENST00000269318 PDE8AO60658 829 aa20.06■□□□□ 0.8
CCDC40-201ENST00000269318 MCM4P33991 863 aa20.06■□□□□ 0.8
CCDC40-201ENST00000269318 NECTIN1Q15223 517 aa20.06■□□□□ 0.8
CCDC40-201ENST00000269318 MAP4K1Q92918 833 aa20.06■□□□□ 0.8
CCDC40-201ENST00000269318 TMX3Q96JJ7 454 aa20.06■□□□□ 0.8
CCDC40-201ENST00000269318 UPF3BQ9BZI7 483 aaKnown RBP20.06■□□□□ 0.8
CCDC40-201ENST00000269318 RIC1Q4ADV7 1423 aa20.06■□□□□ 0.8
CCDC40-201ENST00000269318 ITGA6P23229 1130 aa20.06■□□□□ 0.8
CCDC40-201ENST00000269318 DEKP35659 375 aaKnown RBP20.06■□□□□ 0.8
CCDC40-201ENST00000269318 TNPO1Q92973 898 aaKnown RBP20.06■□□□□ 0.8
CCDC40-201ENST00000269318 DNAJC2Q99543 621 aaKnown RBP20.06■□□□□ 0.8
CCDC40-201ENST00000269318 TAF7LQ5H9L4 462 aa20.05■□□□□ 0.8
CCDC40-201ENST00000269318 SUSD4Q5VX71 490 aa20.05■□□□□ 0.8
CCDC40-201ENST00000269318 AK7Q96M32 723 aa20.05■□□□□ 0.8
CCDC40-201ENST00000269318 RIPOR2Q9Y4F9 1068 aa20.05■□□□□ 0.8
CCDC40-201ENST00000269318 KBTBD3Q8NAB2 608 aa20.04■□□□□ 0.8
CCDC40-201ENST00000269318 CWC22Q9HCG8 908 aaKnown RBP20.04■□□□□ 0.8
CCDC40-201ENST00000269318 AKAP2Q9Y2D5 859 aa20.04■□□□□ 0.8
CCDC40-201ENST00000269318 CUL4AQ13619 759 aa20.04■□□□□ 0.8
CCDC40-201ENST00000269318 PTF1AQ7RTS3 328 aa20.04■□□□□ 0.8
CCDC40-201ENST00000269318 ZNF589Q86UQ0 364 aaPredicted RBP20.04■□□□□ 0.8
CCDC40-201ENST00000269318 LINC00116Q8NCU8 138 aa20.04■□□□□ 0.8
CCDC40-201ENST00000269318 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.04■□□□□ 0.8
CCDC40-201ENST00000269318 TTC14Q96N46 770 aa20.04■□□□□ 0.8
CCDC40-201ENST00000269318 LRP5O75197 1615 aa20.04■□□□□ 0.8
CCDC40-201ENST00000269318 ANKRD18BA2A2Z9 1011 aa20.03■□□□□ 0.8
CCDC40-201ENST00000269318 PRPF40BQ6NWY9 871 aaKnown RBP20.03■□□□□ 0.8
CCDC40-201ENST00000269318 DDX46Q7L014 1031 aaKnown RBP20.03■□□□□ 0.8
CCDC40-201ENST00000269318 TICAM2Q86XR7 235 aa20.03■□□□□ 0.8
CCDC40-201ENST00000269318 ZGPATQ8N5A5 531 aaKnown RBP20.03■□□□□ 0.8
CCDC40-201ENST00000269318 RBM8AQ9Y5S9 174 aaKnown RBP20.03■□□□□ 0.8
CCDC40-201ENST00000269318 BCORQ6W2J9 1755 aa20.03■□□□□ 0.8
CCDC40-201ENST00000269318 SH3TC1Q8TE82 1336 aa20.03■□□□□ 0.8
CCDC40-201ENST00000269318 PARP10Q53GL7 1025 aa20.03■□□□□ 0.8
CCDC40-201ENST00000269318 PAG1Q9NWQ8 432 aa20.03■□□□□ 0.8
CCDC40-201ENST00000269318 SPEF2Q9C093 1822 aa20.02■□□□□ 0.8
CCDC40-201ENST00000269318 NHSQ6T4R5 1651 aa20.02■□□□□ 0.8
CCDC40-201ENST00000269318 CYP2E1P05181 493 aaPredicted RBP20.01■□□□□ 0.79
CCDC40-201ENST00000269318 CREB3L3Q68CJ9 461 aa20.01■□□□□ 0.79
CCDC40-201ENST00000269318 LDHAL6AQ6ZMR3 332 aa20.01■□□□□ 0.79
CCDC40-201ENST00000269318 XAGE2Q96GT9 111 aa20.01■□□□□ 0.79
CCDC40-201ENST00000269318 UTP14AQ9BVJ6 771 aaKnown RBP20.01■□□□□ 0.79
CCDC40-201ENST00000269318 TM6SF1Q9BZW5 370 aa20.01■□□□□ 0.79
CCDC40-201ENST00000269318 CNTNAP4Q9C0A0 1308 aa20.01■□□□□ 0.79
CCDC40-201ENST00000269318 GOLIM4O00461 696 aa20.01■□□□□ 0.79
CCDC40-201ENST00000269318 TAF5LO75529 589 aa20.01■□□□□ 0.79
CCDC40-201ENST00000269318 CHGBP05060 677 aa20.01■□□□□ 0.79
CCDC40-201ENST00000269318 ADORA1P30542 326 aa20.01■□□□□ 0.79
CCDC40-201ENST00000269318 VGLL2Q8N8G2 317 aa20.01■□□□□ 0.79
CCDC40-201ENST00000269318 BTAF1O14981 1849 aa20■□□□□ 0.79
CCDC40-201ENST00000269318 NTSR2O95665 410 aa20■□□□□ 0.79
CCDC40-201ENST00000269318 IFIT1P09914 478 aaKnown RBP20■□□□□ 0.79
CCDC40-201ENST00000269318 SSFA2P28290 1259 aa20■□□□□ 0.79
CCDC40-201ENST00000269318 HSPA1LP34931 641 aa20■□□□□ 0.79
CCDC40-201ENST00000269318 ADCK5Q3MIX3 580 aa20■□□□□ 0.79
CCDC40-201ENST00000269318 GJD4Q96KN9 370 aaPredicted RBP20■□□□□ 0.79
CCDC40-201ENST00000269318 DDX60Q8IY21 1712 aaKnown RBP20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms