RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 C4AP0C0L4 1744 aa17.31■□□□□ 0.36
SS18-201ENST00000269137 CDC45O75419 566 aa17.31■□□□□ 0.36
SS18-201ENST00000269137 SSFA2P28290 1259 aa17.31■□□□□ 0.36
SS18-201ENST00000269137 TBC1D9BQ66K14 1250 aa17.31■□□□□ 0.36
SS18-201ENST00000269137 AACSQ86V21 672 aa17.31■□□□□ 0.36
SS18-201ENST00000269137 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.31■□□□□ 0.36
SS18-201ENST00000269137 TUBGCP6Q96RT7 1819 aa17.3■□□□□ 0.36
SS18-201ENST00000269137 LAMB2P55268 1798 aa17.3■□□□□ 0.36
SS18-201ENST00000269137 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.3■□□□□ 0.36
SS18-201ENST00000269137 TFCP2Q12800 502 aa17.3■□□□□ 0.36
SS18-201ENST00000269137 TSHZ3Q63HK5 1081 aa17.3■□□□□ 0.36
SS18-201ENST00000269137 PI4K2BQ8TCG2 481 aa17.3■□□□□ 0.36
SS18-201ENST00000269137 GPATCH3Q96I76 525 aa17.3■□□□□ 0.36
SS18-201ENST00000269137 SETDB2Q96T68 719 aa17.3■□□□□ 0.36
SS18-201ENST00000269137 GREM2Q9H772 168 aa17.3■□□□□ 0.36
SS18-201ENST00000269137 GPR108Q9NPR9 543 aa17.3■□□□□ 0.36
SS18-201ENST00000269137 HCLS1P14317 486 aaPredicted RBP17.29■□□□□ 0.36
SS18-201ENST00000269137 ITGA6P23229 1130 aa17.29■□□□□ 0.36
SS18-201ENST00000269137 ZNF594Q96JF6 807 aaPredicted RBP17.29■□□□□ 0.36
SS18-201ENST00000269137 ECHDC1Q9NTX5 307 aa17.29■□□□□ 0.36
SS18-201ENST00000269137 COL24A1Q17RW2 1714 aa17.29■□□□□ 0.36
SS18-201ENST00000269137 DDX60Q8IY21 1712 aaKnown RBP17.29■□□□□ 0.36
SS18-201ENST00000269137 ANKRD18BA2A2Z9 1011 aa17.28■□□□□ 0.36
SS18-201ENST00000269137 FAM177BA6PVY3 158 aa17.28■□□□□ 0.36
SS18-201ENST00000269137 ERC2O15083 957 aa17.28■□□□□ 0.36
SS18-201ENST00000269137 TNNI3KQ59H18 835 aa17.28■□□□□ 0.36
SS18-201ENST00000269137 SLC10A5Q5PT55 438 aa17.28■□□□□ 0.36
SS18-201ENST00000269137 TBC1D9Q6ZT07 1266 aa17.28■□□□□ 0.36
SS18-201ENST00000269137 NYXQ9GZU5 481 aa17.28■□□□□ 0.36
SS18-201ENST00000269137 FPGT-TNNI3KV9GXZ4 949 aa17.28■□□□□ 0.36
SS18-201ENST00000269137 RTL9Q8NET4 1388 aa17.28■□□□□ 0.36
SS18-201ENST00000269137 TNS1Q9HBL0 1735 aaKnown RBP17.28■□□□□ 0.36
SS18-201ENST00000269137 RGPD3A6NKT7 1758 aaPredicted RBP17.28■□□□□ 0.36
SS18-201ENST00000269137 RGPD4Q7Z3J3 1758 aa17.28■□□□□ 0.36
SS18-201ENST00000269137 EIF5BO60841 1220 aaKnown RBP17.28■□□□□ 0.36
SS18-201ENST00000269137 GLRX3O76003 335 aaKnown RBP17.28■□□□□ 0.36
SS18-201ENST00000269137 PHF14O94880 888 aa17.28■□□□□ 0.36
SS18-201ENST00000269137 LRRC24Q50LG9 513 aa17.28■□□□□ 0.36
SS18-201ENST00000269137 TAF7LQ5H9L4 462 aa17.27■□□□□ 0.36
SS18-201ENST00000269137 CCDC85AQ96PX6 553 aaPredicted RBP17.27■□□□□ 0.36
SS18-201ENST00000269137 UPF2Q9HAU5 1272 aaKnown RBP17.27■□□□□ 0.36
SS18-201ENST00000269137 CCDC152Q4G0S7 254 aa17.26■□□□□ 0.35
SS18-201ENST00000269137 PUS3Q9BZE2 481 aaKnown RBP17.26■□□□□ 0.35
SS18-201ENST00000269137 CCDC8Q9H0W5 538 aaPredicted RBP17.26■□□□□ 0.35
SS18-201ENST00000269137 ERFEQ4G0M1 354 aa17.26■□□□□ 0.35
SS18-201ENST00000269137 BICDL1Q6ZP65 573 aa17.26■□□□□ 0.35
SS18-201ENST00000269137 ANP32AP39687 249 aaKnown RBP17.25■□□□□ 0.35
SS18-201ENST00000269137 TPTE2Q6XPS3 522 aa17.25■□□□□ 0.35
SS18-201ENST00000269137 AKT1S1Q96B36 256 aa17.25■□□□□ 0.35
SS18-201ENST00000269137 CEP126Q9P2H0 1117 aa17.25■□□□□ 0.35
SS18-201ENST00000269137 RIPOR2Q9Y4F9 1068 aa17.25■□□□□ 0.35
SS18-201ENST00000269137 SF3B3Q15393 1217 aaKnown RBP17.24■□□□□ 0.35
SS18-201ENST00000269137 CASC1Q6TDU7 716 aa17.24■□□□□ 0.35
SS18-201ENST00000269137 LDHAL6AQ6ZMR3 332 aa17.24■□□□□ 0.35
SS18-201ENST00000269137 NBPF5PQ86XG9 351 aaPredicted RBP17.24■□□□□ 0.35
SS18-201ENST00000269137 DBNLQ9UJU6 430 aaKnown RBP17.24■□□□□ 0.35
SS18-201ENST00000269137 TLR7Q9NYK1 1049 aaKnown RBP17.24■□□□□ 0.35
SS18-201ENST00000269137 CARMIL3Q8ND23 1372 aa17.23■□□□□ 0.35
SS18-201ENST00000269137 LRP5O75197 1615 aa17.23■□□□□ 0.35
SS18-201ENST00000269137 TRIM6-TRIM34B2RNG4 842 aa17.23■□□□□ 0.35
SS18-201ENST00000269137 GYS1P13807 737 aa17.23■□□□□ 0.35
SS18-201ENST00000269137 GTF2E1P29083 439 aaPredicted RBP17.23■□□□□ 0.35
SS18-201ENST00000269137 NFIXQ14938 502 aa17.23■□□□□ 0.35
SS18-201ENST00000269137 AKAP2Q9Y2D5 859 aa17.23■□□□□ 0.35
SS18-201ENST00000269137 ZNF609O15014 1411 aa17.22■□□□□ 0.35
SS18-201ENST00000269137 TBC1D32Q96NH3 1257 aa17.22■□□□□ 0.35
SS18-201ENST00000269137 ATP5JP18859 108 aa17.21■□□□□ 0.35
SS18-201ENST00000269137 MFAP1P55081 439 aaKnown RBP17.21■□□□□ 0.35
SS18-201ENST00000269137 ZNF827Q17R98 1081 aa17.21■□□□□ 0.35
SS18-201ENST00000269137 CNTROBQ8N137 903 aa17.21■□□□□ 0.35
SS18-201ENST00000269137 FLAD1Q8NFF5 587 aa17.21■□□□□ 0.35
SS18-201ENST00000269137 RILPL2Q969X0 211 aa17.21■□□□□ 0.35
SS18-201ENST00000269137 CNNM1Q9NRU3 951 aa17.21■□□□□ 0.35
SS18-201ENST00000269137 ABCC12Q96J65 1359 aa17.21■□□□□ 0.35
SS18-201ENST00000269137 RIC1Q4ADV7 1423 aa17.21■□□□□ 0.35
SS18-201ENST00000269137 DBNDD2Q9BQY9 259 aa17.21■□□□□ 0.35
SS18-201ENST00000269137 TFCP2L1Q9NZI6 479 aa17.21■□□□□ 0.35
SS18-201ENST00000269137 AK9Q5TCS8 1911 aa17.2■□□□□ 0.34
SS18-201ENST00000269137 TM4SF1P30408 202 aa17.2■□□□□ 0.34
SS18-201ENST00000269137 VGLL2Q8N8G2 317 aa17.2■□□□□ 0.34
SS18-201ENST00000269137 SEC31BQ9NQW1 1179 aa17.2■□□□□ 0.34
SS18-201ENST00000269137 MROH5Q6ZUA9 1318 aa17.2■□□□□ 0.34
SS18-201ENST00000269137 A0A1B0GUL7 405 aa17.19■□□□□ 0.34
SS18-201ENST00000269137 CHMLP26374 656 aa17.19■□□□□ 0.34
SS18-201ENST00000269137 TIMM10P62072 90 aa17.19■□□□□ 0.34
SS18-201ENST00000269137 METTL24Q5JXM2 366 aa17.19■□□□□ 0.34
SS18-201ENST00000269137 C3orf67Q6ZVT6 689 aa17.19■□□□□ 0.34
SS18-201ENST00000269137 NLRP3Q96P20 1036 aa17.19■□□□□ 0.34
SS18-201ENST00000269137 CAMKK2Q96RR4 588 aa17.19■□□□□ 0.34
SS18-201ENST00000269137 CDC5LQ99459 802 aaKnown RBP17.19■□□□□ 0.34
SS18-201ENST00000269137 IGHMBP2P38935 993 aaKnown RBP17.19■□□□□ 0.34
SS18-201ENST00000269137 EVI5LQ96CN4 794 aa17.19■□□□□ 0.34
SS18-201ENST00000269137 NEUROD6Q96NK8 337 aa17.19■□□□□ 0.34
SS18-201ENST00000269137 MPHOSPH8Q99549 860 aa17.19■□□□□ 0.34
SS18-201ENST00000269137 C22orf23Q9BZE7 217 aa17.19■□□□□ 0.34
SS18-201ENST00000269137 PDE8BO95263 885 aa17.18■□□□□ 0.34
SS18-201ENST00000269137 CASZ1Q86V15 1759 aa17.17■□□□□ 0.34
SS18-201ENST00000269137 MAP4K4O95819 1239 aaPredicted RBP17.17■□□□□ 0.34
SS18-201ENST00000269137 CNBD1Q8NA66 436 aa17.17■□□□□ 0.34
SS18-201ENST00000269137 BOLA2Q9H3K6 86 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms