RNA–Protein interactions for RNA: ENST00000264012.8

CDH3-201, Transcript of cadherin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDH3, Length 4,929 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-201ENST00000264012 RDXP35241 583 aaKnown RBP16.2■□□□□ 0.18
CDH3-201ENST00000264012 UTP14AQ9BVJ6 771 aaKnown RBP16.2■□□□□ 0.18
CDH3-201ENST00000264012 PCDH11XQ9BZA7 1347 aa16.2■□□□□ 0.18
CDH3-201ENST00000264012 PCDH11YQ9BZA8 1340 aa16.2■□□□□ 0.18
CDH3-201ENST00000264012 BIN1O00499 593 aa16.2■□□□□ 0.18
CDH3-201ENST00000264012 BICC1Q9H694 974 aaKnown RBP16.2■□□□□ 0.18
CDH3-201ENST00000264012 ZMYM4Q5VZL5 1548 aa16.2■□□□□ 0.18
CDH3-201ENST00000264012 WTAPQ15007 396 aa16.2■□□□□ 0.18
CDH3-201ENST00000264012 CLIP2Q9UDT6 1046 aa16.2■□□□□ 0.18
CDH3-201ENST00000264012 ZBTB43O43298 467 aa16.19■□□□□ 0.18
CDH3-201ENST00000264012 TMEM266Q2M3C6 531 aa16.19■□□□□ 0.18
CDH3-201ENST00000264012 SLC4A8Q2Y0W8 1093 aa16.19■□□□□ 0.18
CDH3-201ENST00000264012 ZNF790Q6PG37 636 aa16.19■□□□□ 0.18
CDH3-201ENST00000264012 MBD5Q9P267 1494 aa16.19■□□□□ 0.18
CDH3-201ENST00000264012 TARBP1Q13395 1621 aaKnown RBP16.19■□□□□ 0.18
CDH3-201ENST00000264012 TFCP2Q12800 502 aa16.19■□□□□ 0.18
CDH3-201ENST00000264012 KRT23Q9C075 422 aa16.19■□□□□ 0.18
CDH3-201ENST00000264012 SEC24BO95487 1268 aa16.19■□□□□ 0.18
CDH3-201ENST00000264012 CHMLP26374 656 aa16.19■□□□□ 0.18
CDH3-201ENST00000264012 SLC4A4Q9Y6R1 1079 aa16.19■□□□□ 0.18
CDH3-201ENST00000264012 KAT6BQ8WYB5 2073 aa16.19■□□□□ 0.18
CDH3-201ENST00000264012 TOP1P11387 765 aaKnown RBP16.19■□□□□ 0.18
CDH3-201ENST00000264012 ZNF165P49910 485 aa16.19■□□□□ 0.18
CDH3-201ENST00000264012 Q6ZUG5 572 aa16.19■□□□□ 0.18
CDH3-201ENST00000264012 PANK2Q9BZ23 570 aa16.19■□□□□ 0.18
CDH3-201ENST00000264012 NEO1Q92859 1461 aa16.18■□□□□ 0.18
CDH3-201ENST00000264012 ARHGEF5Q12774 1597 aa16.18■□□□□ 0.18
CDH3-201ENST00000264012 IRS4O14654 1257 aaPredicted RBP16.18■□□□□ 0.18
CDH3-201ENST00000264012 CCDC12Q8WUD4 166 aaPredicted RBP16.18■□□□□ 0.18
CDH3-201ENST00000264012 C8orf37Q96NL8 207 aa16.18■□□□□ 0.18
CDH3-201ENST00000264012 HOXB7P09629 217 aa16.18■□□□□ 0.18
CDH3-201ENST00000264012 ST5P78524 1137 aa16.18■□□□□ 0.18
CDH3-201ENST00000264012 STX1AQ16623 288 aa16.18■□□□□ 0.18
CDH3-201ENST00000264012 KIAA1328Q86T90 577 aa16.18■□□□□ 0.18
CDH3-201ENST00000264012 STX8Q9UNK0 236 aa16.18■□□□□ 0.18
CDH3-201ENST00000264012 TMEM2Q9UHN6 1383 aa16.18■□□□□ 0.18
CDH3-201ENST00000264012 PLEKHG3A1L390 1219 aa16.18■□□□□ 0.18
CDH3-201ENST00000264012 ESR2Q92731 530 aa16.18■□□□□ 0.18
CDH3-201ENST00000264012 VAT1LQ9HCJ6 419 aa16.18■□□□□ 0.18
CDH3-201ENST00000264012 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.17■□□□□ 0.18
CDH3-201ENST00000264012 ZNF397Q8NF99 534 aaPredicted RBP16.17■□□□□ 0.18
CDH3-201ENST00000264012 CNNM2Q9H8M5 875 aa16.17■□□□□ 0.18
CDH3-201ENST00000264012 LGR6Q9HBX8 967 aa16.17■□□□□ 0.18
CDH3-201ENST00000264012 SEPT11Q9NVA2 429 aaKnown RBP16.17■□□□□ 0.18
CDH3-201ENST00000264012 TNIP1Q15025 636 aa16.17■□□□□ 0.18
CDH3-201ENST00000264012 GCC2Q8IWJ2 1684 aa16.17■□□□□ 0.18
CDH3-201ENST00000264012 INSRP06213 1382 aa16.17■□□□□ 0.18
CDH3-201ENST00000264012 PTPN14Q15678 1187 aa16.17■□□□□ 0.18
CDH3-201ENST00000264012 ZSCAN23Q3MJ62 389 aa16.17■□□□□ 0.18
CDH3-201ENST00000264012 SPATA31E1Q6ZUB1 1445 aa16.17■□□□□ 0.18
CDH3-201ENST00000264012 RBM25P49756 843 aaKnown RBP16.16■□□□□ 0.18
CDH3-201ENST00000264012 GSTO1P78417 241 aa16.16■□□□□ 0.18
CDH3-201ENST00000264012 TMTC2Q8N394 836 aa16.16■□□□□ 0.18
CDH3-201ENST00000264012 HELBQ8NG08 1087 aaPredicted RBP16.16■□□□□ 0.18
CDH3-201ENST00000264012 ZNF622Q969S3 477 aaKnown RBP eCLIP16.16■□□□□ 0.18
CDH3-201ENST00000264012 CNPY2Q9Y2B0 182 aa16.16■□□□□ 0.18
CDH3-201ENST00000264012 KIF2AO00139 706 aaPredicted RBP16.16■□□□□ 0.18
CDH3-201ENST00000264012 RNF113AO15541 343 aaKnown RBP16.16■□□□□ 0.18
CDH3-201ENST00000264012 PPP1R12BO60237 982 aaPredicted RBP16.16■□□□□ 0.18
CDH3-201ENST00000264012 NAA16Q6N069 864 aaPredicted RBP16.16■□□□□ 0.18
CDH3-201ENST00000264012 AXDND1Q5T1B0 1012 aaPredicted RBP16.16■□□□□ 0.18
CDH3-201ENST00000264012 CUL5Q93034 780 aa16.16■□□□□ 0.18
CDH3-201ENST00000264012 ALG1Q9BT22 464 aa16.16■□□□□ 0.18
CDH3-201ENST00000264012 CCDC66A2RUB6 948 aa16.16■□□□□ 0.18
CDH3-201ENST00000264012 ERLIN1O75477 346 aa16.16■□□□□ 0.18
CDH3-201ENST00000264012 FKBP15Q5T1M5 1219 aa16.16■□□□□ 0.18
CDH3-201ENST00000264012 CCDC102BQ68D86 513 aa16.16■□□□□ 0.18
CDH3-201ENST00000264012 TCP11L1Q9NUJ3 509 aa16.16■□□□□ 0.18
CDH3-201ENST00000264012 BLMP54132 1417 aaPredicted RBP16.16■□□□□ 0.18
CDH3-201ENST00000264012 PATL2C9JE40 543 aaKnown RBP16.15■□□□□ 0.18
CDH3-201ENST00000264012 HLA-DOAP06340 250 aa16.15■□□□□ 0.18
CDH3-201ENST00000264012 SKIDA1Q1XH10 827 aa16.15■□□□□ 0.18
CDH3-201ENST00000264012 CREB3L3Q68CJ9 461 aa16.15■□□□□ 0.18
CDH3-201ENST00000264012 BTG4Q9NY30 223 aa16.15■□□□□ 0.18
CDH3-201ENST00000264012 GIMAP6Q6P9H5 292 aa16.15■□□□□ 0.18
CDH3-201ENST00000264012 OTUD7AQ8TE49 926 aaPredicted RBP16.15■□□□□ 0.18
CDH3-201ENST00000264012 USP26Q9BXU7 913 aa16.15■□□□□ 0.18
CDH3-201ENST00000264012 ZSCAN12O43309 604 aa16.15■□□□□ 0.18
CDH3-201ENST00000264012 ADCY5O95622 1261 aa16.15■□□□□ 0.18
CDH3-201ENST00000264012 HCLS1P14317 486 aaPredicted RBP16.15■□□□□ 0.18
CDH3-201ENST00000264012 AK2P54819 239 aa16.15■□□□□ 0.18
CDH3-201ENST00000264012 TSG101Q99816 390 aa16.15■□□□□ 0.18
CDH3-201ENST00000264012 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.15■□□□□ 0.18
CDH3-201ENST00000264012 PRC1O43663 620 aa16.15■□□□□ 0.18
CDH3-201ENST00000264012 UBA7P41226 1012 aa16.15■□□□□ 0.18
CDH3-201ENST00000264012 CAVIN2O95810 425 aa16.14■□□□□ 0.17
CDH3-201ENST00000264012 RTN1Q16799 776 aa16.14■□□□□ 0.17
CDH3-201ENST00000264012 ZGPATQ8N5A5 531 aaKnown RBP16.14■□□□□ 0.17
CDH3-201ENST00000264012 F13A1P00488 732 aa16.14■□□□□ 0.17
CDH3-201ENST00000264012 USP48Q86UV5 1035 aa16.14■□□□□ 0.17
CDH3-201ENST00000264012 UBXN4Q92575 508 aa16.14■□□□□ 0.17
CDH3-201ENST00000264012 ADGBQ8N7X0 1667 aa16.14■□□□□ 0.17
CDH3-201ENST00000264012 CFAP65Q6ZU64 1925 aaKnown RBP16.14■□□□□ 0.17
CDH3-201ENST00000264012 ERLIN2O94905 339 aa16.14■□□□□ 0.17
CDH3-201ENST00000264012 IFIT1BQ5T764 474 aaKnown RBP16.14■□□□□ 0.17
CDH3-201ENST00000264012 METTL22Q9BUU2 404 aaPredicted RBP16.14■□□□□ 0.17
CDH3-201ENST00000264012 UBA5Q9GZZ9 404 aa16.14■□□□□ 0.17
CDH3-201ENST00000264012 RAD50Q92878 1312 aa16.14■□□□□ 0.17
CDH3-201ENST00000264012 LTKP29376 864 aa16.13■□□□□ 0.17
CDH3-201ENST00000264012 TPTE2Q6XPS3 522 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms