RNA–Protein interactions for RNA: ENST00000235958.4

HMGCL-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA lyase, humanhuman

TSL 5

Gene HMGCL, Length 1,101 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCL-201ENST00000235958 PDZRN3Q9UPQ7 1066 aa12.74□□□□□ -0.37
HMGCL-201ENST00000235958 HOXA10P31260 410 aaPredicted RBP12.73□□□□□ -0.37
HMGCL-201ENST00000235958 RABL6Q3YEC7 729 aaPredicted RBP12.73□□□□□ -0.37
HMGCL-201ENST00000235958 CCDC152Q4G0S7 254 aa12.73□□□□□ -0.37
HMGCL-201ENST00000235958 ANKRD44Q8N8A2 993 aa12.73□□□□□ -0.37
HMGCL-201ENST00000235958 RPGRQ92834 1020 aaKnown RBP12.73□□□□□ -0.37
HMGCL-201ENST00000235958 ZNF622Q969S3 477 aaKnown RBP eCLIP12.73□□□□□ -0.37
HMGCL-201ENST00000235958 SYT17Q9BSW7 474 aa12.73□□□□□ -0.37
HMGCL-201ENST00000235958 GREM2Q9H772 168 aa12.73□□□□□ -0.37
HMGCL-201ENST00000235958 ANKRD31Q8N7Z5 1873 aa12.73□□□□□ -0.37
HMGCL-201ENST00000235958 DDX60Q8IY21 1712 aaKnown RBP12.72□□□□□ -0.37
HMGCL-201ENST00000235958 NPR1P16066 1061 aa12.72□□□□□ -0.37
HMGCL-201ENST00000235958 ATP8B2P98198 1209 aa12.72□□□□□ -0.37
HMGCL-201ENST00000235958 DDX46Q7L014 1031 aaKnown RBP12.72□□□□□ -0.37
HMGCL-201ENST00000235958 MASTLQ96GX5 879 aa12.72□□□□□ -0.37
HMGCL-201ENST00000235958 RBM17Q96I25 401 aaKnown RBP12.72□□□□□ -0.37
HMGCL-201ENST00000235958 SEC31BQ9NQW1 1179 aa12.72□□□□□ -0.37
HMGCL-201ENST00000235958 CHMP3Q9Y3E7 222 aa12.72□□□□□ -0.37
HMGCL-201ENST00000235958 MYH3P11055 1940 aa12.72□□□□□ -0.37
HMGCL-201ENST00000235958 TAF1P21675 1872 aa12.72□□□□□ -0.37
HMGCL-201ENST00000235958 RIC1Q4ADV7 1423 aa12.71□□□□□ -0.37
HMGCL-201ENST00000235958 C10orf71Q711Q0 1435 aa12.71□□□□□ -0.37
HMGCL-201ENST00000235958 SRCAPQ6ZRS2 3230 aa12.71□□□□□ -0.37
HMGCL-201ENST00000235958 ITGA6P23229 1130 aa12.71□□□□□ -0.37
HMGCL-201ENST00000235958 ALDH1B1P30837 517 aa12.71□□□□□ -0.37
HMGCL-201ENST00000235958 IFIT5Q13325 482 aaKnown RBP12.71□□□□□ -0.37
HMGCL-201ENST00000235958 CCDC57Q2TAC2 916 aa12.71□□□□□ -0.37
HMGCL-201ENST00000235958 STYK1Q6J9G0 422 aa12.71□□□□□ -0.37
HMGCL-201ENST00000235958 NLGN2Q8NFZ4 835 aa12.71□□□□□ -0.37
HMGCL-201ENST00000235958 CRAMP1Q96RY5 1269 aa12.71□□□□□ -0.37
HMGCL-201ENST00000235958 KIF13BQ9NQT8 1826 aa12.7□□□□□ -0.38
HMGCL-201ENST00000235958 ANKRD18BA2A2Z9 1011 aa12.7□□□□□ -0.38
HMGCL-201ENST00000235958 BBOX1O75936 387 aa12.7□□□□□ -0.38
HMGCL-201ENST00000235958 RPS8P62241 208 aaKnown RBP12.7□□□□□ -0.38
HMGCL-201ENST00000235958 MTX1Q13505 466 aa12.7□□□□□ -0.38
HMGCL-201ENST00000235958 AAMPQ13685 434 aa12.7□□□□□ -0.38
HMGCL-201ENST00000235958 FAM161AQ3B820 660 aa12.7□□□□□ -0.38
HMGCL-201ENST00000235958 RPAP2Q8IXW5 612 aaPredicted RBP12.7□□□□□ -0.38
HMGCL-201ENST00000235958 CNKSR1Q969H4 720 aa12.7□□□□□ -0.38
HMGCL-201ENST00000235958 PIM2Q9P1W9 311 aa12.7□□□□□ -0.38
HMGCL-201ENST00000235958 PCDHB15Q9Y5E8 787 aa12.7□□□□□ -0.38
HMGCL-201ENST00000235958 LAMB2P55268 1798 aa12.7□□□□□ -0.38
HMGCL-201ENST00000235958 PNMA6EA0A0J9YXQ4 647 aa12.69□□□□□ -0.38
HMGCL-201ENST00000235958 SRGAP3O43295 1099 aa12.69□□□□□ -0.38
HMGCL-201ENST00000235958 NEFLP07196 543 aa12.69□□□□□ -0.38
HMGCL-201ENST00000235958 CEP85Q6P2H3 762 aa12.69□□□□□ -0.38
HMGCL-201ENST00000235958 SIRT2Q8IXJ6 389 aa12.69□□□□□ -0.38
HMGCL-201ENST00000235958 TTLL6Q8N841 843 aa12.69□□□□□ -0.38
HMGCL-201ENST00000235958 CELF1Q92879 486 aaKnown RBP12.69□□□□□ -0.38
HMGCL-201ENST00000235958 ZNF594Q96JF6 807 aaPredicted RBP12.69□□□□□ -0.38
HMGCL-201ENST00000235958 RTL9Q8NET4 1388 aa12.69□□□□□ -0.38
HMGCL-201ENST00000235958 TNRC6CQ9HCJ0 1690 aaKnown RBP12.68□□□□□ -0.38
HMGCL-201ENST00000235958 RFX5P48382 616 aaPredicted RBP12.68□□□□□ -0.38
HMGCL-201ENST00000235958 GRAPQ13588 217 aa12.68□□□□□ -0.38
HMGCL-201ENST00000235958 KLHDC4Q8TBB5 520 aa12.68□□□□□ -0.38
HMGCL-201ENST00000235958 GRAPLQ8TC17 118 aaPredicted RBP12.68□□□□□ -0.38
HMGCL-201ENST00000235958 SSH3Q8TE77 659 aa12.68□□□□□ -0.38
HMGCL-201ENST00000235958 CDC5LQ99459 802 aaKnown RBP12.68□□□□□ -0.38
HMGCL-201ENST00000235958 WWC3Q9ULE0 1092 aa12.68□□□□□ -0.38
HMGCL-201ENST00000235958 PTPN12Q05209 780 aaKnown RBP12.67□□□□□ -0.38
HMGCL-201ENST00000235958 POLA2Q14181 598 aa12.67□□□□□ -0.38
HMGCL-201ENST00000235958 DALRD3Q5D0E6 543 aaKnown RBP12.67□□□□□ -0.38
HMGCL-201ENST00000235958 TAF7LQ5H9L4 462 aa12.67□□□□□ -0.38
HMGCL-201ENST00000235958 LDHAL6AQ6ZMR3 332 aa12.67□□□□□ -0.38
HMGCL-201ENST00000235958 ANKRD18AQ8IVF6 992 aa12.67□□□□□ -0.38
HMGCL-201ENST00000235958 IGHMBP2P38935 993 aaKnown RBP12.66□□□□□ -0.38
HMGCL-201ENST00000235958 PRPF40BQ6NWY9 871 aaKnown RBP12.66□□□□□ -0.38
HMGCL-201ENST00000235958 C7orf43Q8WVR3 580 aa12.66□□□□□ -0.38
HMGCL-201ENST00000235958 MPHOSPH8Q99549 860 aa12.66□□□□□ -0.38
HMGCL-201ENST00000235958 PUS3Q9BZE2 481 aaKnown RBP12.66□□□□□ -0.38
HMGCL-201ENST00000235958 COPRSQ9NQ92 184 aa12.66□□□□□ -0.38
HMGCL-201ENST00000235958 BSDC1Q9NW68 430 aaPredicted RBP12.66□□□□□ -0.38
HMGCL-201ENST00000235958 ZNF219Q9P2Y4 722 aaPredicted RBP12.66□□□□□ -0.38
HMGCL-201ENST00000235958 PA2G4Q9UQ80 394 aaKnown RBP12.66□□□□□ -0.38
HMGCL-201ENST00000235958 SLX4Q8IY92 1834 aa12.66□□□□□ -0.38
HMGCL-201ENST00000235958 HMMRO75330 724 aa12.65□□□□□ -0.38
HMGCL-201ENST00000235958 SP8Q8IXZ3 490 aa12.65□□□□□ -0.38
HMGCL-201ENST00000235958 BCS1LQ9Y276 419 aa12.65□□□□□ -0.38
HMGCL-201ENST00000235958 RIPOR2Q9Y4F9 1068 aa12.65□□□□□ -0.38
HMGCL-201ENST00000235958 LRP5O75197 1615 aa12.64□□□□□ -0.39
HMGCL-201ENST00000235958 PPEF1O14829 653 aaPredicted RBP12.64□□□□□ -0.39
HMGCL-201ENST00000235958 C21orf2O43822 256 aa12.64□□□□□ -0.39
HMGCL-201ENST00000235958 SURF6O75683 361 aaKnown RBP12.64□□□□□ -0.39
HMGCL-201ENST00000235958 LRRC24Q50LG9 513 aa12.64□□□□□ -0.39
HMGCL-201ENST00000235958 OLFM4Q6UX06 510 aa12.64□□□□□ -0.39
HMGCL-201ENST00000235958 TMC4Q7Z404 712 aa12.64□□□□□ -0.39
HMGCL-201ENST00000235958 SIL1Q9H173 461 aa12.64□□□□□ -0.39
HMGCL-201ENST00000235958 CNNM1Q9NRU3 951 aa12.64□□□□□ -0.39
HMGCL-201ENST00000235958 MINPP1Q9UNW1 487 aa12.64□□□□□ -0.39
HMGCL-201ENST00000235958 ATP6V0A2Q9Y487 856 aa12.64□□□□□ -0.39
HMGCL-201ENST00000235958 KIAA1551Q9HCM1 1747 aa12.64□□□□□ -0.39
HMGCL-201ENST00000235958 COL11A2P13942 1736 aaPredicted RBP12.63□□□□□ -0.39
HMGCL-201ENST00000235958 EYA2O00167 538 aa12.63□□□□□ -0.39
HMGCL-201ENST00000235958 G3BP1Q13283 466 aaKnown RBP eCLIP12.63□□□□□ -0.39
HMGCL-201ENST00000235958 ATG9AQ7Z3C6 839 aa12.63□□□□□ -0.39
HMGCL-201ENST00000235958 NOP58Q9Y2X3 529 aaKnown RBP12.63□□□□□ -0.39
HMGCL-201ENST00000235958 COL4A1P02462 1669 aa12.62□□□□□ -0.39
HMGCL-201ENST00000235958 IGHDP01880 384 aa12.62□□□□□ -0.39
HMGCL-201ENST00000235958 HDAC1Q13547 482 aaPredicted RBP12.62□□□□□ -0.39
HMGCL-201ENST00000235958 CC2D2BQ6DHV5 1058 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 93.6 ms