RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 CCBE1Q6UXH8 406 aaPredicted RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 RNF111Q6ZNA4 994 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 Q6ZSR6 202 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 PARS2Q7L3T8 475 aaKnown RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF547Q8IVP9 402 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 LILRB2Q8N423 598 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 SIGLECL1Q8N7X8 197 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 LSMEM1Q8N8F7 131 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 OR5H6Q8NGV6 325 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 RASD2Q96D21 266 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 FAM84AQ96KN4 292 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 OR2M2Q96R28 347 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 C12orf57Q99622 126 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 OCSTAMPQ9BR26 566 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 COQ10BQ9H8M1 238 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 B3GALT1Q9Y5Z6 326 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 TMEM131LA2VDJ0 1609 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF670-ZNF695F2Z2N8 137 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 MATN3O15232 486 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 F10P00742 488 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 UGT2B7P16662 529 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 TACR1P25103 407 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 C21orf33P30042 268 aaPredicted RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 GGT5P36269 586 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 OPRD1P41143 372 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 CARD18P57730 90 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 RHDQ02161 417 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 LTBQ06643 244 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 DSC1Q08554 894 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 SLC10A6Q3KNW5 377 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 NRN1LQ496H8 165 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 NCR3LG1Q68D85 454 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 DET1Q7L5Y6 550 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 MRGPREQ86SM8 312 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 SCML4Q8N228 414 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 CADM2Q8N3J6 435 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 BMPERQ8N8U9 685 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 OR4D9Q8NGE8 314 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 OR2T6Q8NHC8 308 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 FANK1Q8TC84 345 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 GEMIN6Q8WXD5 167 aaKnown RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 SPOCK2Q92563 424 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 PIGTQ969N2 578 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 ORAI1Q96D31 301 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 MICU1Q9BPX6 476 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 WDR77Q9BQA1 342 aaPredicted RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 POLR2J2Q9GZM3 115 aaKnown RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 CLMPQ9H6B4 373 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 ISYNA1Q9NPH2 558 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 RXFP3Q9NSD7 469 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 SLC35D1Q9NTN3 355 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 TEX10Q9NXF1 929 aaPredicted RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 OR5V1Q9UGF6 321 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 PURGQ9UJV8 347 aaKnown RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 GOLT1BQ9Y3E0 138 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 PTRH2Q9Y3E5 179 aaKnown RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 ATRQ13535 2644 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 LTN1O94822 1766 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 WNK3Q9BYP7 1800 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 MED1Q15648 1581 aaPredicted RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 TNFSF12-TNFSF13A0A0A6YY99 330 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 A0A1W2PPV4 95 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 MYADML2A6NDP7 307 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 AGPAT2O15120 278 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 KDELR3O43731 214 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 HLA-DPB1P04440 258 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 STAG3L3P0CL85 134 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 CPN1P15169 458 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 EDNRAP25101 427 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 ERHP84090 104 aaKnown RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 CEBPEQ15744 281 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 HACD4Q5VWC8 232 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 SLC6A19Q695T7 634 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 GLYATQ6IB77 296 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 SHC4Q6S5L8 630 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 PLXDC2Q6UX71 529 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 MEPCEQ7L2J0 689 aaKnown RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF551Q7Z340 670 aaPredicted RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 THOC6Q86W42 341 aaKnown RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 GID4Q8IVV7 300 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF676Q8N7Q3 588 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 SGMS2Q8NHU3 365 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 ABHD4Q8TB40 342 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 APOBEC4Q8WW27 367 aaKnown RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 RND1Q92730 232 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 NEIL2Q969S2 332 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 TMEM80Q96HE8 168 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 COL21A1Q96P44 957 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 PGLYRP2Q96PD5 576 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 DHRS4Q9BTZ2 278 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 MTHFD2LQ9H903 347 aaPredicted RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 ZBTB26Q9HCK0 441 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 TM7SF3Q9NS93 570 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 CTNNBIP1Q9NSA3 81 aaPredicted RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 AP5S1Q9NUS5 200 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 HRASLS2Q9NWW9 162 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 NPAP1Q9NZP6 1156 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 EXO1Q9UQ84 846 aaKnown RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 MOB4Q9Y3A3 225 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 NUBP2Q9Y5Y2 271 aa2.61□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms