RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 GKN3PP0CG01 181 aa14.14□□□□□ -0.15
CLN3-246ENST00000636228 IL7RP16871 459 aa14.14□□□□□ -0.15
CLN3-246ENST00000636228 FKBP2P26885 142 aaKnown RBP14.14□□□□□ -0.15
CLN3-246ENST00000636228 SLC1A3P43003 542 aa14.14□□□□□ -0.15
CLN3-246ENST00000636228 CLNS1AP54105 237 aaKnown RBP14.14□□□□□ -0.15
CLN3-246ENST00000636228 LOXL1Q08397 574 aaPredicted RBP14.14□□□□□ -0.15
CLN3-246ENST00000636228 BNIP2Q12982 314 aa14.14□□□□□ -0.15
CLN3-246ENST00000636228 CEACAM7Q14002 265 aa14.14□□□□□ -0.15
CLN3-246ENST00000636228 HIKESHIQ53FT3 197 aa14.14□□□□□ -0.15
CLN3-246ENST00000636228 OTUD3Q5T2D3 398 aaPredicted RBP14.14□□□□□ -0.15
CLN3-246ENST00000636228 MRPL2Q5T653 305 aaKnown RBP14.14□□□□□ -0.15
CLN3-246ENST00000636228 TMEM99Q8N816 258 aa14.14□□□□□ -0.15
CLN3-246ENST00000636228 ZIC4Q8N9L1 334 aa14.14□□□□□ -0.15
CLN3-246ENST00000636228 WDR60Q8WVS4 1066 aa14.14□□□□□ -0.15
CLN3-246ENST00000636228 FAM168AQ92567 244 aa14.14□□□□□ -0.15
CLN3-246ENST00000636228 ZNF385AQ96PM9 386 aaKnown RBP14.14□□□□□ -0.15
CLN3-246ENST00000636228 PANX1Q96RD7 426 aa14.14□□□□□ -0.15
CLN3-246ENST00000636228 KCNK17Q96T54 332 aa14.14□□□□□ -0.15
CLN3-246ENST00000636228 TMEM109Q9BVC6 243 aa14.14□□□□□ -0.15
CLN3-246ENST00000636228 PARPBPQ9NWS1 579 aa14.14□□□□□ -0.15
CLN3-246ENST00000636228 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.14□□□□□ -0.15
CLN3-246ENST00000636228 BTNL2Q9UIR0 455 aa14.14□□□□□ -0.15
CLN3-246ENST00000636228 DCTN4Q9UJW0 460 aa14.14□□□□□ -0.15
CLN3-246ENST00000636228 MOKQ9UQ07 419 aa14.14□□□□□ -0.15
CLN3-246ENST00000636228 SLC9A8Q9Y2E8 581 aa14.14□□□□□ -0.15
CLN3-246ENST00000636228 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.14□□□□□ -0.15
CLN3-246ENST00000636228 V9GYY5 206 aaPredicted RBP14.14□□□□□ -0.15
CLN3-246ENST00000636228 CFAP73A6NFT4 308 aa14.13□□□□□ -0.15
CLN3-246ENST00000636228 ELOA3DA6NLF2 546 aaPredicted RBP14.13□□□□□ -0.15
CLN3-246ENST00000636228 RGS16O15492 202 aaPredicted RBP14.13□□□□□ -0.15
CLN3-246ENST00000636228 ZNF208O43345 1280 aa14.13□□□□□ -0.15
CLN3-246ENST00000636228 EIF1BO60739 113 aaKnown RBP14.13□□□□□ -0.15
CLN3-246ENST00000636228 NR2F1P10589 423 aa14.13□□□□□ -0.15
CLN3-246ENST00000636228 DSCR9P59020 149 aa14.13□□□□□ -0.15
CLN3-246ENST00000636228 LGALS3BPQ08380 585 aa14.13□□□□□ -0.15
CLN3-246ENST00000636228 EPS8Q12929 822 aa14.13□□□□□ -0.15
CLN3-246ENST00000636228 STX3Q13277 289 aa14.13□□□□□ -0.15
CLN3-246ENST00000636228 OR7A5Q15622 319 aa14.13□□□□□ -0.15
CLN3-246ENST00000636228 ELOA3BQ3SY89 546 aa14.13□□□□□ -0.15
CLN3-246ENST00000636228 ZNF544Q6NX49 715 aa14.13□□□□□ -0.15
CLN3-246ENST00000636228 LRRC74BQ6ZQY2 392 aa14.13□□□□□ -0.15
CLN3-246ENST00000636228 AAED1Q7RTV5 226 aa14.13□□□□□ -0.15
CLN3-246ENST00000636228 VRK2Q86Y07 508 aa14.13□□□□□ -0.15
CLN3-246ENST00000636228 ELOA3Q8NG57 546 aa14.13□□□□□ -0.15
CLN3-246ENST00000636228 PMM1Q92871 262 aa14.13□□□□□ -0.15
CLN3-246ENST00000636228 AURKBQ96GD4 344 aaPredicted RBP14.13□□□□□ -0.15
CLN3-246ENST00000636228 PAIP2Q9BPZ3 127 aaKnown RBP14.13□□□□□ -0.15
CLN3-246ENST00000636228 AMBRA1Q9C0C7 1298 aa14.13□□□□□ -0.15
CLN3-246ENST00000636228 MTHFD2LQ9H903 347 aaPredicted RBP14.13□□□□□ -0.15
CLN3-246ENST00000636228 MEAF6Q9HAF1 191 aa14.13□□□□□ -0.15
CLN3-246ENST00000636228 AMDHD2Q9Y303 409 aa14.13□□□□□ -0.15
CLN3-246ENST00000636228 H7C417 338 aa14.12□□□□□ -0.15
CLN3-246ENST00000636228 RPS4Y1P22090 263 aaKnown RBP14.12□□□□□ -0.15
CLN3-246ENST00000636228 MPGP29372 298 aa14.12□□□□□ -0.15
CLN3-246ENST00000636228 APOBEC3AP31941 199 aaPredicted RBP14.12□□□□□ -0.15
CLN3-246ENST00000636228 EFNA4P52798 201 aa14.12□□□□□ -0.15
CLN3-246ENST00000636228 VLDLRP98155 873 aa14.12□□□□□ -0.15
CLN3-246ENST00000636228 MAPK11Q15759 364 aa14.12□□□□□ -0.15
CLN3-246ENST00000636228 DPY19L1Q2PZI1 675 aa14.12□□□□□ -0.15
CLN3-246ENST00000636228 MST1LQ2TV78 715 aa14.12□□□□□ -0.15
CLN3-246ENST00000636228 PAQR6Q6TCH4 344 aa14.12□□□□□ -0.15
CLN3-246ENST00000636228 GPAT4Q86UL3 456 aa14.12□□□□□ -0.15
CLN3-246ENST00000636228 CMIPQ8IY22 773 aa14.12□□□□□ -0.15
CLN3-246ENST00000636228 CADM2Q8N3J6 435 aa14.12□□□□□ -0.15
CLN3-246ENST00000636228 ARIH2OSQ8N7S6 290 aa14.12□□□□□ -0.15
CLN3-246ENST00000636228 OR9K2Q8NGE7 335 aa14.12□□□□□ -0.15
CLN3-246ENST00000636228 C10orf105Q8TEF2 133 aa14.12□□□□□ -0.15
CLN3-246ENST00000636228 FBXO17Q96EF6 278 aa14.12□□□□□ -0.15
CLN3-246ENST00000636228 OR52E6Q96RD3 313 aa14.12□□□□□ -0.15
CLN3-246ENST00000636228 ADAM19Q9H013 955 aa14.12□□□□□ -0.15
CLN3-246ENST00000636228 CENPHQ9H3R5 247 aa14.12□□□□□ -0.15
CLN3-246ENST00000636228 WDR55Q9H6Y2 383 aaPredicted RBP14.12□□□□□ -0.15
CLN3-246ENST00000636228 FKRPQ9H9S5 495 aa14.12□□□□□ -0.15
CLN3-246ENST00000636228 KCNK9Q9NPC2 374 aa14.12□□□□□ -0.15
CLN3-246ENST00000636228 SLC6A13Q9NSD5 602 aa14.12□□□□□ -0.15
CLN3-246ENST00000636228 AIG1Q9NVV5 245 aa14.12□□□□□ -0.15
CLN3-246ENST00000636228 RTTNQ86VV8 2226 aa14.12□□□□□ -0.15
CLN3-246ENST00000636228 ABCA1O95477 2261 aa14.12□□□□□ -0.15
CLN3-246ENST00000636228 ALPK2Q86TB3 2170 aa14.12□□□□□ -0.15
CLN3-246ENST00000636228 LIPT2A6NK58 231 aa14.11□□□□□ -0.15
CLN3-246ENST00000636228 SDHDO14521 159 aa14.11□□□□□ -0.15
CLN3-246ENST00000636228 PHF1O43189 567 aaPredicted RBP14.11□□□□□ -0.15
CLN3-246ENST00000636228 PGRP06401 933 aa14.11□□□□□ -0.15
CLN3-246ENST00000636228 DBIP07108 87 aaKnown RBP14.11□□□□□ -0.15
CLN3-246ENST00000636228 IGHV4-31P0DP07 118 aa14.11□□□□□ -0.15
CLN3-246ENST00000636228 PRG2P13727 222 aa14.11□□□□□ -0.15
CLN3-246ENST00000636228 SLC25A16P16260 332 aa14.11□□□□□ -0.15
CLN3-246ENST00000636228 ZNF16P17020 682 aaPredicted RBP14.11□□□□□ -0.15
CLN3-246ENST00000636228 CXCR1P25024 350 aa14.11□□□□□ -0.15
CLN3-246ENST00000636228 PRPS1P60891 318 aa14.11□□□□□ -0.15
CLN3-246ENST00000636228 TGFBR3Q03167 851 aa14.11□□□□□ -0.15
CLN3-246ENST00000636228 CHRNB3Q05901 458 aa14.11□□□□□ -0.15
CLN3-246ENST00000636228 BST1Q10588 318 aa14.11□□□□□ -0.15
CLN3-246ENST00000636228 GNA13Q14344 377 aa14.11□□□□□ -0.15
CLN3-246ENST00000636228 C17orf78Q8N4C9 275 aa14.11□□□□□ -0.15
CLN3-246ENST00000636228 TRIML2Q8N7C3 387 aa14.11□□□□□ -0.15
CLN3-246ENST00000636228 C1orf162Q8NEQ5 155 aaPredicted RBP14.11□□□□□ -0.15
CLN3-246ENST00000636228 BEX2Q9BXY8 128 aa14.11□□□□□ -0.15
CLN3-246ENST00000636228 HAO1Q9UJM8 370 aa14.11□□□□□ -0.15
CLN3-246ENST00000636228 PMF1-BGLAPU3KQ54 211 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms