RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 CNEP1R1Q8N9A8 125 aa16.18■□□□□ 0.18
CLN3-239ENST00000628023 GEMIN6Q8WXD5 167 aaKnown RBP16.18■□□□□ 0.18
CLN3-239ENST00000628023 ROBO4Q8WZ75 1007 aa16.18■□□□□ 0.18
CLN3-239ENST00000628023 HSH2DQ96JZ2 352 aa16.18■□□□□ 0.18
CLN3-239ENST00000628023 SFXN3Q9BWM7 321 aa16.18■□□□□ 0.18
CLN3-239ENST00000628023 ENKD1Q9H0I2 346 aa16.18■□□□□ 0.18
CLN3-239ENST00000628023 C1orf21Q9H246 121 aa16.18■□□□□ 0.18
CLN3-239ENST00000628023 RNF122Q9H9V4 155 aa16.18■□□□□ 0.18
CLN3-239ENST00000628023 C12orf10Q9HB07 376 aa16.18■□□□□ 0.18
CLN3-239ENST00000628023 CD300AQ9UGN4 299 aa16.18■□□□□ 0.18
CLN3-239ENST00000628023 TACC2O95359 2948 aa16.18■□□□□ 0.18
CLN3-239ENST00000628023 FBN2P35556 2912 aa16.18■□□□□ 0.18
CLN3-239ENST00000628023 DOCK7Q96N67 2140 aa16.18■□□□□ 0.18
CLN3-239ENST00000628023 TEP1Q99973 2627 aaKnown RBP16.17■□□□□ 0.18
CLN3-239ENST00000628023 PDZD2O15018 2839 aa16.17■□□□□ 0.18
CLN3-239ENST00000628023 ZC3H12DA2A288 527 aaKnown RBP16.17■□□□□ 0.18
CLN3-239ENST00000628023 TRAPPC13A5PLN9 417 aa16.17■□□□□ 0.18
CLN3-239ENST00000628023 ARPC2O15144 300 aa16.17■□□□□ 0.18
CLN3-239ENST00000628023 GYG2O15488 501 aa16.17■□□□□ 0.18
CLN3-239ENST00000628023 TPST2O60704 377 aa16.17■□□□□ 0.18
CLN3-239ENST00000628023 PDE5AO76074 875 aa16.17■□□□□ 0.18
CLN3-239ENST00000628023 AHSA1O95433 338 aa16.17■□□□□ 0.18
CLN3-239ENST00000628023 PMS2P2O95744 297 aa16.17■□□□□ 0.18
CLN3-239ENST00000628023 OPRM1P35372 400 aa16.17■□□□□ 0.18
CLN3-239ENST00000628023 AGFG1P52594 562 aaKnown RBP16.17■□□□□ 0.18
CLN3-239ENST00000628023 SIRPAP78324 504 aa16.17■□□□□ 0.18
CLN3-239ENST00000628023 CEACAM7Q14002 265 aa16.17■□□□□ 0.18
CLN3-239ENST00000628023 DNAL1Q4LDG9 190 aa16.17■□□□□ 0.18
CLN3-239ENST00000628023 IFI44LQ53G44 452 aa16.17■□□□□ 0.18
CLN3-239ENST00000628023 SWT1Q5T5J6 900 aaKnown RBP16.17■□□□□ 0.18
CLN3-239ENST00000628023 GTF2IRD2BQ6EKJ0 949 aa16.17■□□□□ 0.18
CLN3-239ENST00000628023 C6orf89Q6UWU4 347 aa16.17■□□□□ 0.18
CLN3-239ENST00000628023 GTF2IRD2Q86UP8 949 aa16.17■□□□□ 0.18
CLN3-239ENST00000628023 ADAMTS16Q8TE57 1224 aa16.17■□□□□ 0.18
CLN3-239ENST00000628023 NSMCE2Q96MF7 247 aa16.17■□□□□ 0.18
CLN3-239ENST00000628023 TAPBPLQ9BX59 468 aa16.17■□□□□ 0.18
CLN3-239ENST00000628023 TAS2R1Q9NYW7 299 aa16.17■□□□□ 0.18
CLN3-239ENST00000628023 ZNF629Q9UEG4 869 aaPredicted RBP16.17■□□□□ 0.18
CLN3-239ENST00000628023 ITGB1BP2Q9UKP3 347 aa16.17■□□□□ 0.18
CLN3-239ENST00000628023 SAMD4AQ9UPU9 718 aaKnown RBP16.17■□□□□ 0.18
CLN3-239ENST00000628023 CSMD1Q96PZ7 3565 aa16.17■□□□□ 0.18
CLN3-239ENST00000628023 CCDC168Q8NDH2 2452 aa16.16■□□□□ 0.18
CLN3-239ENST00000628023 TMEM229AB2RXF0 380 aa16.16■□□□□ 0.18
CLN3-239ENST00000628023 EEF1E1-BLOC1S5C9J1V9 151 aa16.16■□□□□ 0.18
CLN3-239ENST00000628023 EEF1E1O43324 174 aaKnown RBP16.16■□□□□ 0.18
CLN3-239ENST00000628023 IFNW1P05000 195 aa16.16■□□□□ 0.18
CLN3-239ENST00000628023 GPIP06744 558 aa16.16■□□□□ 0.18
CLN3-239ENST00000628023 GTF2E2P29084 291 aaKnown RBP16.16■□□□□ 0.18
CLN3-239ENST00000628023 IFNA8P32881 189 aa16.16■□□□□ 0.18
CLN3-239ENST00000628023 CDH12P55289 794 aa16.16■□□□□ 0.18
CLN3-239ENST00000628023 CTBP2P56545 445 aa16.16■□□□□ 0.18
CLN3-239ENST00000628023 SLC35A1P78382 337 aa16.16■□□□□ 0.18
CLN3-239ENST00000628023 TLE4Q04727 773 aa16.16■□□□□ 0.18
CLN3-239ENST00000628023 FOXF2Q12947 444 aa16.16■□□□□ 0.18
CLN3-239ENST00000628023 RNPS1Q15287 305 aaKnown RBP16.16■□□□□ 0.18
CLN3-239ENST00000628023 OR7A5Q15622 319 aa16.16■□□□□ 0.18
CLN3-239ENST00000628023 SLC25A35Q3KQZ1 300 aa16.16■□□□□ 0.18
CLN3-239ENST00000628023 C1orf140Q5VVS0 124 aa16.16■□□□□ 0.18
CLN3-239ENST00000628023 LILRB4Q8NHJ6 448 aa16.16■□□□□ 0.18
CLN3-239ENST00000628023 STK35Q8TDR2 534 aa16.16■□□□□ 0.18
CLN3-239ENST00000628023 RNF128Q8TEB7 428 aa16.16■□□□□ 0.18
CLN3-239ENST00000628023 ABHD3Q8WU67 409 aa16.16■□□□□ 0.18
CLN3-239ENST00000628023 POTEKPQ9BYX7 375 aa16.16■□□□□ 0.18
CLN3-239ENST00000628023 UCK2Q9BZX2 261 aa16.16■□□□□ 0.18
CLN3-239ENST00000628023 PCDHAC1Q9H158 963 aa16.16■□□□□ 0.18
CLN3-239ENST00000628023 KCNJ16Q9NPI9 418 aa16.16■□□□□ 0.18
CLN3-239ENST00000628023 CLEC4AQ9UMR7 237 aa16.16■□□□□ 0.18
CLN3-239ENST00000628023 EMC9Q9Y3B6 208 aa16.16■□□□□ 0.18
CLN3-239ENST00000628023 V9GYQ6 96 aa16.16■□□□□ 0.18
CLN3-239ENST00000628023 A0A1W2PNV4 684 aa16.15■□□□□ 0.18
CLN3-239ENST00000628023 NKX2-6A6NCS4 301 aa16.15■□□□□ 0.18
CLN3-239ENST00000628023 CHP2O43745 196 aa16.15■□□□□ 0.18
CLN3-239ENST00000628023 STAMBPO95630 424 aa16.15■□□□□ 0.18
CLN3-239ENST00000628023 IL18BPO95998 194 aa16.15■□□□□ 0.18
CLN3-239ENST00000628023 CRHP06850 196 aa16.15■□□□□ 0.18
CLN3-239ENST00000628023 PTNP21246 168 aa16.15■□□□□ 0.18
CLN3-239ENST00000628023 CBX1P83916 185 aa16.15■□□□□ 0.18
CLN3-239ENST00000628023 EEF1A1P5Q5VTE0 462 aa16.15■□□□□ 0.18
CLN3-239ENST00000628023 C5orf46Q6UWT4 87 aa16.15■□□□□ 0.18
CLN3-239ENST00000628023 LIX1LQ8IVB5 337 aa16.15■□□□□ 0.18
CLN3-239ENST00000628023 SLC43A2Q8N370 569 aa16.15■□□□□ 0.18
CLN3-239ENST00000628023 SLC38A4Q969I6 547 aa16.15■□□□□ 0.18
CLN3-239ENST00000628023 CCDC124Q96CT7 223 aaKnown RBP16.15■□□□□ 0.18
CLN3-239ENST00000628023 SLC41A3Q96GZ6 507 aa16.15■□□□□ 0.18
CLN3-239ENST00000628023 GMPPAQ96IJ6 420 aaPredicted RBP16.15■□□□□ 0.18
CLN3-239ENST00000628023 EPYCQ99645 322 aa16.15■□□□□ 0.18
CLN3-239ENST00000628023 NAA11Q9BSU3 229 aaPredicted RBP16.15■□□□□ 0.18
CLN3-239ENST00000628023 THTPAQ9BU02 230 aa16.15■□□□□ 0.18
CLN3-239ENST00000628023 POLR2J2Q9GZM3 115 aaKnown RBP16.15■□□□□ 0.18
CLN3-239ENST00000628023 POLR2J3Q9H1A7 115 aaKnown RBP16.15■□□□□ 0.18
CLN3-239ENST00000628023 GORASP2Q9H8Y8 452 aa16.15■□□□□ 0.18
CLN3-239ENST00000628023 MCCC2Q9HCC0 563 aa16.15■□□□□ 0.18
CLN3-239ENST00000628023 GLRX2Q9NS18 164 aa16.15■□□□□ 0.18
CLN3-239ENST00000628023 DCAF13Q9NV06 445 aaKnown RBP16.15■□□□□ 0.18
CLN3-239ENST00000628023 C6orf203Q9P0P8 240 aaPredicted RBP16.15■□□□□ 0.18
CLN3-239ENST00000628023 KLHL9Q9P2J3 617 aa16.15■□□□□ 0.18
CLN3-239ENST00000628023 SLC7A7Q9UM01 511 aa16.15■□□□□ 0.18
CLN3-239ENST00000628023 TRAPPC4Q9Y296 219 aa16.15■□□□□ 0.18
CLN3-239ENST00000628023 POLQO75417 2590 aa16.15■□□□□ 0.18
CLN3-239ENST00000628023 MED12LQ86YW9 2145 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms