RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 EMBQ6PCB8 327 aa12.75□□□□□ -0.37
PNKP-218ENST00000625299 RNF165Q6ZSG1 346 aa12.75□□□□□ -0.37
PNKP-218ENST00000625299 C6orf120Q7Z4R8 191 aa12.75□□□□□ -0.37
PNKP-218ENST00000625299 C10orf107Q8IVU9 208 aa12.75□□□□□ -0.37
PNKP-218ENST00000625299 SVOPLQ8N434 492 aa12.75□□□□□ -0.37
PNKP-218ENST00000625299 ARFGAP2Q8N6H7 521 aa12.75□□□□□ -0.37
PNKP-218ENST00000625299 NOA1Q8NC60 698 aaKnown RBP12.75□□□□□ -0.37
PNKP-218ENST00000625299 FAM71CQ8NEG0 241 aa12.75□□□□□ -0.37
PNKP-218ENST00000625299 SGMS2Q8NHU3 365 aa12.75□□□□□ -0.37
PNKP-218ENST00000625299 WDR60Q8WVS4 1066 aa12.75□□□□□ -0.37
PNKP-218ENST00000625299 NEU4Q8WWR8 484 aaPredicted RBP12.75□□□□□ -0.37
PNKP-218ENST00000625299 GCDHQ92947 438 aaPredicted RBP12.75□□□□□ -0.37
PNKP-218ENST00000625299 DDIT4LQ96D03 193 aa12.75□□□□□ -0.37
PNKP-218ENST00000625299 AURKBQ96GD4 344 aaPredicted RBP12.75□□□□□ -0.37
PNKP-218ENST00000625299 PPP3R2Q96LZ3 170 aa12.75□□□□□ -0.37
PNKP-218ENST00000625299 ZNF385AQ96PM9 386 aaKnown RBP12.75□□□□□ -0.37
PNKP-218ENST00000625299 PRPF18Q99633 342 aaKnown RBP12.75□□□□□ -0.37
PNKP-218ENST00000625299 SEC61A2Q9H9S3 476 aa12.75□□□□□ -0.37
PNKP-218ENST00000625299 LPAR2Q9HBW0 351 aa12.75□□□□□ -0.37
PNKP-218ENST00000625299 EXD2Q9NVH0 621 aa12.75□□□□□ -0.37
PNKP-218ENST00000625299 TMEM45AQ9NWC5 275 aa12.75□□□□□ -0.37
PNKP-218ENST00000625299 PCDHGB4Q9UN71 923 aa12.75□□□□□ -0.37
PNKP-218ENST00000625299 TRAPPC4Q9Y296 219 aa12.75□□□□□ -0.37
PNKP-218ENST00000625299 TMED7Q9Y3B3 224 aa12.75□□□□□ -0.37
PNKP-218ENST00000625299 WDR45Q9Y484 360 aa12.75□□□□□ -0.37
PNKP-218ENST00000625299 A0A096LPE4 126 aa12.74□□□□□ -0.37
PNKP-218ENST00000625299 A0A1W2PPZ6 126 aa12.74□□□□□ -0.37
PNKP-218ENST00000625299 CLDN24A6NM45 220 aa12.74□□□□□ -0.37
PNKP-218ENST00000625299 LYNX1G3V0Z9 82 aa12.74□□□□□ -0.37
PNKP-218ENST00000625299 NR5A2O00482 541 aa12.74□□□□□ -0.37
PNKP-218ENST00000625299 AP3D1O14617 1153 aa12.74□□□□□ -0.37
PNKP-218ENST00000625299 URI1O94763 535 aaPredicted RBP12.74□□□□□ -0.37
PNKP-218ENST00000625299 CECR9P0C854 216 aa12.74□□□□□ -0.37
PNKP-218ENST00000625299 LYNX1P0DP58 116 aa12.74□□□□□ -0.37
PNKP-218ENST00000625299 FKBP2P26885 142 aaKnown RBP12.74□□□□□ -0.37
PNKP-218ENST00000625299 CALCRP30988 508 aa12.74□□□□□ -0.37
PNKP-218ENST00000625299 NAAAQ02083 359 aa12.74□□□□□ -0.37
PNKP-218ENST00000625299 LGALS3BPQ08380 585 aa12.74□□□□□ -0.37
PNKP-218ENST00000625299 PGS1Q32NB8 556 aa12.74□□□□□ -0.37
PNKP-218ENST00000625299 C1QTNF12Q5T7M4 302 aa12.74□□□□□ -0.37
PNKP-218ENST00000625299 TYW3Q6IPR3 259 aaKnown RBP12.74□□□□□ -0.37
PNKP-218ENST00000625299 SHQ1Q6PI26 577 aaKnown RBP12.74□□□□□ -0.37
PNKP-218ENST00000625299 THSD4Q6ZMP0 1018 aa12.74□□□□□ -0.37
PNKP-218ENST00000625299 TRMT10CQ7L0Y3 403 aaKnown RBP12.74□□□□□ -0.37
PNKP-218ENST00000625299 SPATA21Q7Z572 469 aa12.74□□□□□ -0.37
PNKP-218ENST00000625299 ABHD12BQ7Z5M8 362 aaPredicted RBP12.74□□□□□ -0.37
PNKP-218ENST00000625299 GPAT4Q86UL3 456 aa12.74□□□□□ -0.37
PNKP-218ENST00000625299 GLCCI1Q86VQ1 547 aa12.74□□□□□ -0.37
PNKP-218ENST00000625299 CLECL1Q8IZS7 167 aa12.74□□□□□ -0.37
PNKP-218ENST00000625299 NATD1Q8N6N6 113 aa12.74□□□□□ -0.37
PNKP-218ENST00000625299 POMGNT2Q8NAT1 580 aa12.74□□□□□ -0.37
PNKP-218ENST00000625299 FNDC5Q8NAU1 212 aa12.74□□□□□ -0.37
PNKP-218ENST00000625299 OR9K2Q8NGE7 335 aa12.74□□□□□ -0.37
PNKP-218ENST00000625299 OR1K1Q8NGR3 316 aa12.74□□□□□ -0.37
PNKP-218ENST00000625299 ZFAND2BQ8WV99 257 aa12.74□□□□□ -0.37
PNKP-218ENST00000625299 TMEM45BQ96B21 275 aa12.74□□□□□ -0.37
PNKP-218ENST00000625299 COQ8BQ96D53 544 aa12.74□□□□□ -0.37
PNKP-218ENST00000625299 ALKBH3Q96Q83 286 aaPredicted RBP12.74□□□□□ -0.37
PNKP-218ENST00000625299 DUSP26Q9BV47 211 aa12.74□□□□□ -0.37
PNKP-218ENST00000625299 GATA5Q9BWX5 397 aaPredicted RBP12.74□□□□□ -0.37
PNKP-218ENST00000625299 OR51I1Q9H343 314 aa12.74□□□□□ -0.37
PNKP-218ENST00000625299 NARFLQ9H6Q4 476 aa12.74□□□□□ -0.37
PNKP-218ENST00000625299 OBP2BQ9NPH6 170 aa12.74□□□□□ -0.37
PNKP-218ENST00000625299 A0A0A6YYJ9 748 aa12.73□□□□□ -0.37
PNKP-218ENST00000625299 ZC3H12DA2A288 527 aaKnown RBP12.73□□□□□ -0.37
PNKP-218ENST00000625299 ZNF587BE7ETH6 402 aa12.73□□□□□ -0.37
PNKP-218ENST00000625299 SLCO1B7G3V0H7 640 aa12.73□□□□□ -0.37
PNKP-218ENST00000625299 LYPLA1O75608 230 aaPredicted RBP12.73□□□□□ -0.37
PNKP-218ENST00000625299 CHRNGP07510 517 aa12.73□□□□□ -0.37
PNKP-218ENST00000625299 OR12D1P0DN82 309 aa12.73□□□□□ -0.37
PNKP-218ENST00000625299 NPR2P20594 1047 aa12.73□□□□□ -0.37
PNKP-218ENST00000625299 CCT5P48643 541 aa12.73□□□□□ -0.37
PNKP-218ENST00000625299 POLR2HP52434 150 aaKnown RBP12.73□□□□□ -0.37
PNKP-218ENST00000625299 IL1RL1Q01638 556 aa12.73□□□□□ -0.37
PNKP-218ENST00000625299 ADRM1Q16186 407 aa12.73□□□□□ -0.37
PNKP-218ENST00000625299 ATP6AP1LQ52LC2 224 aa12.73□□□□□ -0.37
PNKP-218ENST00000625299 ATAD3BQ5T9A4 648 aa12.73□□□□□ -0.37
PNKP-218ENST00000625299 IL23RQ5VWK5 629 aa12.73□□□□□ -0.37
PNKP-218ENST00000625299 TNFAIP8L2Q6P589 184 aaPredicted RBP12.73□□□□□ -0.37
PNKP-218ENST00000625299 ANKRD16Q6P6B7 361 aa12.73□□□□□ -0.37
PNKP-218ENST00000625299 ZNF786Q8N393 782 aa12.73□□□□□ -0.37
PNKP-218ENST00000625299 UBASH3BQ8TF42 649 aa12.73□□□□□ -0.37
PNKP-218ENST00000625299 ZNF418Q8TF45 676 aaPredicted RBP12.73□□□□□ -0.37
PNKP-218ENST00000625299 XAGE5Q8WWM1 108 aa12.73□□□□□ -0.37
PNKP-218ENST00000625299 RAB8BQ92930 207 aa12.73□□□□□ -0.37
PNKP-218ENST00000625299 TPK1Q9H3S4 243 aa12.73□□□□□ -0.37
PNKP-218ENST00000625299 B4DSR2 109 aa12.72□□□□□ -0.37
PNKP-218ENST00000625299 COPEO14579 308 aa12.72□□□□□ -0.37
PNKP-218ENST00000625299 SCN2BO60939 215 aa12.72□□□□□ -0.37
PNKP-218ENST00000625299 AKR7A3O95154 331 aa12.72□□□□□ -0.37
PNKP-218ENST00000625299 CELA3BP08861 270 aa12.72□□□□□ -0.37
PNKP-218ENST00000625299 CREB1P16220 341 aa12.72□□□□□ -0.37
PNKP-218ENST00000625299 PRPS1L1P21108 318 aa12.72□□□□□ -0.37
PNKP-218ENST00000625299 TACR3P29371 465 aa12.72□□□□□ -0.37
PNKP-218ENST00000625299 CRHR1P34998 444 aa12.72□□□□□ -0.37
PNKP-218ENST00000625299 THBS4P35443 961 aa12.72□□□□□ -0.37
PNKP-218ENST00000625299 HTR3AP46098 478 aa12.72□□□□□ -0.37
PNKP-218ENST00000625299 KCNJ10P78508 379 aa12.72□□□□□ -0.37
PNKP-218ENST00000625299 HPCAP84074 193 aa12.72□□□□□ -0.37
PNKP-218ENST00000625299 PCLAFQ15004 111 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms