RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 SORDQ00796 357 aa11.65□□□□□ -0.55
LIG1-221ENST00000613670 MESP2Q0VG99 397 aa11.65□□□□□ -0.55
LIG1-221ENST00000613670 HLA-DQA1Q5Y7H0 255 aa11.65□□□□□ -0.55
LIG1-221ENST00000613670 SFTPA1Q8IWL2 248 aa11.65□□□□□ -0.55
LIG1-221ENST00000613670 TMIEQ8NEW7 156 aa11.65□□□□□ -0.55
LIG1-221ENST00000613670 OR5AK2Q8NH90 309 aa11.65□□□□□ -0.55
LIG1-221ENST00000613670 DUSP19Q8WTR2 217 aa11.65□□□□□ -0.55
LIG1-221ENST00000613670 INPP5EQ9NRR6 644 aa11.65□□□□□ -0.55
LIG1-221ENST00000613670 FBXO34Q9NWN3 711 aa11.65□□□□□ -0.55
LIG1-221ENST00000613670 POLR1DQ9Y2S0 133 aa11.65□□□□□ -0.55
LIG1-221ENST00000613670 PATJQ8NI35 1801 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 ACOT7O00154 380 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 GMDSO60547 372 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 ZNF35P13682 527 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 CCKBRP32239 447 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 DCTDP32321 178 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 CAPZA2P47755 286 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 DNASE1L1P49184 302 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 ILF3Q12906 894 aaKnown RBP eCLIP11.64□□□□□ -0.55
LIG1-221ENST00000613670 ZNF765Q7L2R6 523 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 BEST3Q8N1M1 668 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 DVL3Q92997 716 aaPredicted RBP11.64□□□□□ -0.55
LIG1-221ENST00000613670 YIPF5Q969M3 257 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 C7orf50Q9BRJ6 194 aaKnown RBP11.64□□□□□ -0.55
LIG1-221ENST00000613670 ZBP1Q9H171 429 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 ANKRD19PQ9H560 264 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 CCDC86Q9H6F5 360 aaKnown RBP11.64□□□□□ -0.55
LIG1-221ENST00000613670 HRASLSQ9HDD0 168 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 Q9N2J8 555 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 C14orf105Q9NVL8 296 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 SLC39A1Q9NY26 324 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 HEBP2Q9Y5Z4 205 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 SRMP19623 302 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 RPL35P42766 123 aaKnown RBP11.64□□□□□ -0.55
LIG1-221ENST00000613670 SELENOPP49908 381 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 DLX5P56178 289 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 CTXN1P60606 82 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 RPS15AP62244 130 aaKnown RBP11.64□□□□□ -0.55
LIG1-221ENST00000613670 NKPD1Q17RQ9 610 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 LGALSLQ3ZCW2 172 aaPredicted RBP11.64□□□□□ -0.55
LIG1-221ENST00000613670 RNLSQ5VYX0 342 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 LAMTOR1Q6IAA8 161 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 FIGLAQ6QHK4 219 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 SLC39A5Q6ZMH5 540 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 OR5T3Q8NGG3 340 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 GAL3ST3Q96A11 431 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 OR2M4Q96R27 311 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 TSPAN10Q9H1Z9 355 aaPredicted RBP11.64□□□□□ -0.55
LIG1-221ENST00000613670 SLC6A15Q9H2J7 730 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 DLL4Q9NR61 685 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 HRASLS2Q9NWW9 162 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 GRHPRQ9UBQ7 328 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 ACAD8Q9UKU7 415 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 F5H5P2 479 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 F13BP05160 661 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 CD2P06729 351 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 RAP2BP61225 183 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 PLA1AQ53H76 456 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 UBE2NLQ5JXB2 153 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 HACD4Q5VWC8 232 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 RAB12Q6IQ22 244 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 ZNF454Q8N9F8 522 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 RASD2Q96D21 266 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 SLC17A9Q9BYT1 436 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 PRDM7Q9NQW5 492 aa11.64□□□□□ -0.55
LIG1-221ENST00000613670 MCIDASD6RGH6 385 aa11.63□□□□□ -0.55
LIG1-221ENST00000613670 PRKNO60260 465 aaPredicted RBP11.63□□□□□ -0.55
LIG1-221ENST00000613670 PLGP00747 810 aaPredicted RBP11.63□□□□□ -0.55
LIG1-221ENST00000613670 HIST1H1CP16403 213 aaKnown RBP11.63□□□□□ -0.55
LIG1-221ENST00000613670 ERVK-21P61565 698 aa11.63□□□□□ -0.55
LIG1-221ENST00000613670 RPE65Q16518 533 aa11.63□□□□□ -0.55
LIG1-221ENST00000613670 GSG1Q2KHT4 349 aa11.63□□□□□ -0.55
LIG1-221ENST00000613670 RPL22L1Q6P5R6 122 aaKnown RBP11.63□□□□□ -0.55
LIG1-221ENST00000613670 OR52R1Q8NGF1 315 aa11.63□□□□□ -0.55
LIG1-221ENST00000613670 OR2L8Q8NGY9 312 aa11.63□□□□□ -0.55
LIG1-221ENST00000613670 ST8SIA4Q92187 359 aa11.63□□□□□ -0.55
LIG1-221ENST00000613670 TSSK2Q96PF2 358 aa11.63□□□□□ -0.55
LIG1-221ENST00000613670 NKX3-1Q99801 234 aaPredicted RBP11.63□□□□□ -0.55
LIG1-221ENST00000613670 ULBP3Q9BZM4 244 aa11.63□□□□□ -0.55
LIG1-221ENST00000613670 MCOLN1Q9GZU1 580 aa11.63□□□□□ -0.55
LIG1-221ENST00000613670 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.63□□□□□ -0.55
LIG1-221ENST00000613670 ZBTB32Q9Y2Y4 487 aaPredicted RBP11.63□□□□□ -0.55
LIG1-221ENST00000613670 STON1Q9Y6Q2 735 aa11.63□□□□□ -0.55
LIG1-221ENST00000613670 hCG_1807616A0A1W2PRN6 198 aa11.63□□□□□ -0.55
LIG1-221ENST00000613670 IDSB3KWA1 339 aa11.63□□□□□ -0.55
LIG1-221ENST00000613670 F5H0A9 414 aaPredicted RBP11.63□□□□□ -0.55
LIG1-221ENST00000613670 RENP00797 406 aa11.63□□□□□ -0.55
LIG1-221ENST00000613670 MAPK3P27361 379 aaPredicted RBP11.63□□□□□ -0.55
LIG1-221ENST00000613670 ZNF77Q15935 545 aa11.63□□□□□ -0.55
LIG1-221ENST00000613670 TAF8Q7Z7C8 310 aa11.63□□□□□ -0.55
LIG1-221ENST00000613670 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.63□□□□□ -0.55
LIG1-221ENST00000613670 REM2Q8IYK8 340 aaPredicted RBP11.63□□□□□ -0.55
LIG1-221ENST00000613670 ARMC10Q8N2F6 343 aa11.63□□□□□ -0.55
LIG1-221ENST00000613670 ARHGDIGQ99819 225 aa11.63□□□□□ -0.55
LIG1-221ENST00000613670 PITHD1Q9GZP4 211 aaPredicted RBP11.63□□□□□ -0.55
LIG1-221ENST00000613670 ZMAT3Q9HA38 289 aaKnown RBP11.63□□□□□ -0.55
LIG1-221ENST00000613670 CENPMQ9NSP4 180 aa11.63□□□□□ -0.55
LIG1-221ENST00000613670 UPB1Q9UBR1 384 aa11.63□□□□□ -0.55
LIG1-221ENST00000613670 INSL6Q9Y581 213 aa11.63□□□□□ -0.55
LIG1-221ENST00000613670 CENPVL1A0A0U1RR11 272 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms