RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 ATP23Q9Y6H3 246 aa19.03■□□□□ 0.64
UPF1-207ENST00000599848 SFTPCP11686 197 aa19.03■□□□□ 0.64
UPF1-207ENST00000599848 TP53I3Q53FA7 332 aa19.03■□□□□ 0.64
UPF1-207ENST00000599848 ENTPD8Q5MY95 495 aa19.03■□□□□ 0.64
UPF1-207ENST00000599848 TMEM211Q6ICI0 200 aa19.03■□□□□ 0.64
UPF1-207ENST00000599848 CISD2Q8N5K1 135 aaKnown RBP19.03■□□□□ 0.64
UPF1-207ENST00000599848 DMBX1Q8NFW5 382 aa19.03■□□□□ 0.64
UPF1-207ENST00000599848 SUN5Q8TC36 379 aa19.03■□□□□ 0.64
UPF1-207ENST00000599848 FIZ1Q96SL8 496 aa19.03■□□□□ 0.64
UPF1-207ENST00000599848 ARRDC1-AS1Q9H2J1 176 aa19.03■□□□□ 0.64
UPF1-207ENST00000599848 LIN7BQ9HAP6 207 aa19.03■□□□□ 0.64
UPF1-207ENST00000599848 CNIH4Q9P003 139 aa19.03■□□□□ 0.64
UPF1-207ENST00000599848 WNT16Q9UBV4 365 aa19.03■□□□□ 0.64
UPF1-207ENST00000599848 CD79BP40259 229 aa19.03■□□□□ 0.64
UPF1-207ENST00000599848 ARRDC2Q8TBH0 407 aa19.03■□□□□ 0.64
UPF1-207ENST00000599848 OR14A2Q96R54 314 aa19.03■□□□□ 0.64
UPF1-207ENST00000599848 HAPLN2Q9GZV7 340 aa19.03■□□□□ 0.64
UPF1-207ENST00000599848 LTB4R2Q9NPC1 389 aa19.03■□□□□ 0.64
UPF1-207ENST00000599848 SNAP29O95721 258 aa19.03■□□□□ 0.64
UPF1-207ENST00000599848 SUB1P53999 127 aaKnown RBP eCLIP19.03■□□□□ 0.649e-7■■■□□ 17.7
UPF1-207ENST00000599848 KCNJ15Q99712 375 aa19.03■□□□□ 0.64
UPF1-207ENST00000599848 CUEDC1Q9NWM3 386 aaPredicted RBP19.03■□□□□ 0.64
UPF1-207ENST00000599848 FAM96BQ9Y3D0 163 aa19.03■□□□□ 0.64
UPF1-207ENST00000599848 HSBP1L1C9JCN9 74 aa19.02■□□□□ 0.64
UPF1-207ENST00000599848 LINC01387J3KSC0 135 aa19.02■□□□□ 0.64
UPF1-207ENST00000599848 PRPH2P23942 346 aa19.02■□□□□ 0.64
UPF1-207ENST00000599848 ARR3P36575 388 aa19.02■□□□□ 0.64
UPF1-207ENST00000599848 RAD52P43351 418 aa19.02■□□□□ 0.64
UPF1-207ENST00000599848 ZNF136P52737 540 aa19.02■□□□□ 0.64
UPF1-207ENST00000599848 IKZF1Q13422 519 aa19.02■□□□□ 0.64
UPF1-207ENST00000599848 UGT8Q16880 541 aa19.02■□□□□ 0.64
UPF1-207ENST00000599848 ALKAL1Q6UXT8 129 aa19.02■□□□□ 0.64
UPF1-207ENST00000599848 GJC3Q8NFK1 279 aa19.02■□□□□ 0.64
UPF1-207ENST00000599848 CRYBA1P05813 215 aa19.02■□□□□ 0.64
UPF1-207ENST00000599848 GAAP10253 952 aa19.02■□□□□ 0.64
UPF1-207ENST00000599848 OPRD1P41143 372 aa19.02■□□□□ 0.64
UPF1-207ENST00000599848 ADPRHP54922 357 aa19.02■□□□□ 0.64
UPF1-207ENST00000599848 C18orf21Q32NC0 220 aaPredicted RBP19.02■□□□□ 0.64
UPF1-207ENST00000599848 PCGF3Q3KNV8 242 aa19.02■□□□□ 0.64
UPF1-207ENST00000599848 RPL22L1Q6P5R6 122 aaKnown RBP19.02■□□□□ 0.64
UPF1-207ENST00000599848 PIANPQ8IYJ0 282 aa19.02■□□□□ 0.64
UPF1-207ENST00000599848 KIAA1958Q8N8K9 716 aa19.02■□□□□ 0.64
UPF1-207ENST00000599848 MED18Q9BUE0 208 aa19.02■□□□□ 0.64
UPF1-207ENST00000599848 NPIPA5A0A0B4J1W7 369 aa19.02■□□□□ 0.64
UPF1-207ENST00000599848 NPIPA7E9PJI5 369 aa19.02■□□□□ 0.64
UPF1-207ENST00000599848 ABCD4O14678 606 aa19.02■□□□□ 0.64
UPF1-207ENST00000599848 NPIPA8P0DM63 369 aa19.02■□□□□ 0.64
UPF1-207ENST00000599848 GSK3AP49840 483 aa19.02■□□□□ 0.64
UPF1-207ENST00000599848 SLC22A6Q4U2R8 563 aa19.02■□□□□ 0.64
UPF1-207ENST00000599848 C9orf135Q5VTT2 229 aa19.02■□□□□ 0.64
UPF1-207ENST00000599848 BRICD5Q6PL45 260 aa19.02■□□□□ 0.64
UPF1-207ENST00000599848 FAM109AQ8N4B1 249 aa19.02■□□□□ 0.64
UPF1-207ENST00000599848 ARFGAP1Q8N6T3 406 aa19.02■□□□□ 0.64
UPF1-207ENST00000599848 P2RY12Q9H244 342 aa19.02■□□□□ 0.64
UPF1-207ENST00000599848 HSD3B7Q9H2F3 369 aa19.02■□□□□ 0.64
UPF1-207ENST00000599848 SPACA1Q9HBV2 294 aa19.02■□□□□ 0.64
UPF1-207ENST00000599848 C4BP0C0L5 1744 aa19.02■□□□□ 0.63
UPF1-207ENST00000599848 TMEM212A6NML5 194 aa19.02■□□□□ 0.63
UPF1-207ENST00000599848 SYT5O00445 386 aa19.02■□□□□ 0.63
UPF1-207ENST00000599848 UBBP0CG47 229 aa19.02■□□□□ 0.63
UPF1-207ENST00000599848 UBCP0CG48 685 aaKnown RBP19.02■□□□□ 0.63
UPF1-207ENST00000599848 GPR3P46089 330 aa19.02■□□□□ 0.63
UPF1-207ENST00000599848 MTCP1P56278 107 aa19.02■□□□□ 0.63
UPF1-207ENST00000599848 DEFB109BQ30KR1 87 aa19.02■□□□□ 0.63
UPF1-207ENST00000599848 WDR88Q6ZMY6 472 aa19.02■□□□□ 0.63
UPF1-207ENST00000599848 MAML2Q8IZL2 1156 aaPredicted RBP19.02■□□□□ 0.63
UPF1-207ENST00000599848 MORN4Q8NDC4 146 aa19.02■□□□□ 0.63
UPF1-207ENST00000599848 CRYGNQ8WXF5 182 aa19.02■□□□□ 0.63
UPF1-207ENST00000599848 ZDHHC16Q969W1 377 aa19.02■□□□□ 0.63
UPF1-207ENST00000599848 ZNF778Q96MU6 729 aa19.02■□□□□ 0.63
UPF1-207ENST00000599848 CTRCQ99895 268 aa19.02■□□□□ 0.63
UPF1-207ENST00000599848 QPCTLQ9NXS2 382 aa19.02■□□□□ 0.63
UPF1-207ENST00000599848 SLC22A23A1A5C7 686 aa19.01■□□□□ 0.63
UPF1-207ENST00000599848 SSX5O60225 188 aa19.01■□□□□ 0.63
UPF1-207ENST00000599848 RAB40ALP0C0E4 278 aa19.01■□□□□ 0.63
UPF1-207ENST00000599848 PHC1P78364 1004 aa19.01■□□□□ 0.63
UPF1-207ENST00000599848 HES5Q5TA89 166 aa19.01■□□□□ 0.63
UPF1-207ENST00000599848 GRINAQ7Z429 371 aa19.01■□□□□ 0.63
UPF1-207ENST00000599848 CYB561A3Q8NBI2 242 aa19.01■□□□□ 0.63
UPF1-207ENST00000599848 OR4A16Q8NH70 328 aa19.01■□□□□ 0.63
UPF1-207ENST00000599848 RAB40AQ8WXH6 277 aa19.01■□□□□ 0.63
UPF1-207ENST00000599848 UHRF2Q96PU4 802 aa19.01■□□□□ 0.63
UPF1-207ENST00000599848 ACPTQ9BZG2 426 aa19.01■□□□□ 0.63
UPF1-207ENST00000599848 GSTO2Q9H4Y5 243 aa19.01■□□□□ 0.63
UPF1-207ENST00000599848 YARS2Q9Y2Z4 477 aaKnown RBP19.01■□□□□ 0.63
UPF1-207ENST00000599848 V9GY05 133 aa19.01■□□□□ 0.63
UPF1-207ENST00000599848 CRYBG1Q9Y4K1 1723 aa19.01■□□□□ 0.63
UPF1-207ENST00000599848 PIP5K1CO60331 668 aa19.01■□□□□ 0.63
UPF1-207ENST00000599848 MAT1AQ00266 395 aaKnown RBP19.01■□□□□ 0.63
UPF1-207ENST00000599848 COL9A3Q14050 684 aaPredicted RBP19.01■□□□□ 0.63
UPF1-207ENST00000599848 METTL11BQ5VVY1 283 aa19.01■□□□□ 0.63
UPF1-207ENST00000599848 LRRC56Q8IYG6 542 aaPredicted RBP19.01■□□□□ 0.63
UPF1-207ENST00000599848 ASB12Q8WXK4 309 aa19.01■□□□□ 0.63
UPF1-207ENST00000599848 DHCR7Q9UBM7 475 aaKnown RBP19.01■□□□□ 0.63
UPF1-207ENST00000599848 SSUH2Q9Y2M2 353 aa19.01■□□□□ 0.63
UPF1-207ENST00000599848 PLEKHM1Q9Y4G2 1056 aa19.01■□□□□ 0.63
UPF1-207ENST00000599848 NARSO43776 548 aaKnown RBP19.01■□□□□ 0.63
UPF1-207ENST00000599848 KIAA1456Q9P272 454 aa19.01■□□□□ 0.63
UPF1-207ENST00000599848 HSPB11Q9Y547 144 aa19.01■□□□□ 0.63
UPF1-207ENST00000599848 AKAP12Q02952 1782 aa19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms