RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 SELENOFO60613 162 aa14.08□□□□□ -0.15
UPF1-204ENST00000596842 ZIC1Q15915 447 aa14.08□□□□□ -0.15
UPF1-204ENST00000596842 PRRT3Q5FWE3 981 aa14.08□□□□□ -0.15
UPF1-204ENST00000596842 FCRLAQ7L513 359 aa14.08□□□□□ -0.15
UPF1-204ENST00000596842 MRGPREQ86SM8 312 aa14.08□□□□□ -0.15
UPF1-204ENST00000596842 MEIOBQ8N635 442 aa14.08□□□□□ -0.15
UPF1-204ENST00000596842 OR4N2Q8NGD1 307 aa14.08□□□□□ -0.15
UPF1-204ENST00000596842 HSPA12BQ96MM6 686 aa14.08□□□□□ -0.15
UPF1-204ENST00000596842 NMNAT3Q96T66 252 aa14.08□□□□□ -0.15
UPF1-204ENST00000596842 MEPEQ9NQ76 525 aaPredicted RBP14.08□□□□□ -0.15
UPF1-204ENST00000596842 RPS6KB2Q9UBS0 482 aa14.08□□□□□ -0.15
UPF1-204ENST00000596842 PFDN2Q9UHV9 154 aa14.08□□□□□ -0.15
UPF1-204ENST00000596842 BLOC1S5-TXNDC5H3BN57 136 aa14.08□□□□□ -0.16
UPF1-204ENST00000596842 RGS11O94810 467 aa14.08□□□□□ -0.16
UPF1-204ENST00000596842 CFDP00746 253 aaPredicted RBP14.08□□□□□ -0.16
UPF1-204ENST00000596842 FOSL2P15408 326 aa14.08□□□□□ -0.16
UPF1-204ENST00000596842 SELENOPP49908 381 aa14.08□□□□□ -0.16
UPF1-204ENST00000596842 ERVK-25P63136 954 aa14.08□□□□□ -0.16
UPF1-204ENST00000596842 SLC36A2Q495M3 483 aa14.08□□□□□ -0.16
UPF1-204ENST00000596842 HSD17B12Q53GQ0 312 aa14.08□□□□□ -0.16
UPF1-204ENST00000596842 TIMP4Q99727 224 aa14.08□□□□□ -0.16
UPF1-204ENST00000596842 POT1Q9NUX5 634 aa14.08□□□□□ -0.16
UPF1-204ENST00000596842 GPR171O14626 319 aa14.08□□□□□ -0.16
UPF1-204ENST00000596842 SIGLEC5O15389 551 aa14.08□□□□□ -0.16
UPF1-204ENST00000596842 FGF17O60258 216 aa14.08□□□□□ -0.16
UPF1-204ENST00000596842 FMO6PO60774 539 aa14.08□□□□□ -0.16
UPF1-204ENST00000596842 S100A6P06703 90 aa14.08□□□□□ -0.16
UPF1-204ENST00000596842 HIST1H1CP16403 213 aaKnown RBP14.08□□□□□ -0.16
UPF1-204ENST00000596842 MAP2K6P52564 334 aa14.08□□□□□ -0.16
UPF1-204ENST00000596842 GBX2P52951 348 aaPredicted RBP14.08□□□□□ -0.16
UPF1-204ENST00000596842 UBE2MP61081 183 aaKnown RBP14.08□□□□□ -0.16
UPF1-204ENST00000596842 SIGLEC14Q08ET2 396 aa14.08□□□□□ -0.16
UPF1-204ENST00000596842 TANGO2Q6ICL3 276 aa14.08□□□□□ -0.16
UPF1-204ENST00000596842 SFTPA2Q8IWL1 248 aa14.08□□□□□ -0.16
UPF1-204ENST00000596842 GPALPP1Q8IXQ4 340 aa14.08□□□□□ -0.16
UPF1-204ENST00000596842 ZNF619Q8N2I2 560 aa14.08□□□□□ -0.16
UPF1-204ENST00000596842 DNAAF1Q8NEP3 725 aa14.08□□□□□ -0.16
UPF1-204ENST00000596842 TSSK2Q96PF2 358 aa14.08□□□□□ -0.16
UPF1-204ENST00000596842 GHITMQ9H3K2 345 aa14.08□□□□□ -0.16
UPF1-204ENST00000596842 ADGRL4Q9HBW9 690 aa14.08□□□□□ -0.16
UPF1-204ENST00000596842 NOX4Q9NPH5 578 aa14.08□□□□□ -0.16
UPF1-204ENST00000596842 CMC2Q9NRP2 79 aa14.08□□□□□ -0.16
UPF1-204ENST00000596842 HPF1Q9NWY4 346 aa14.08□□□□□ -0.16
UPF1-204ENST00000596842 PHF11Q9UIL8 331 aa14.08□□□□□ -0.16
UPF1-204ENST00000596842 SLC35A3Q9Y2D2 325 aa14.08□□□□□ -0.16
UPF1-204ENST00000596842 NUBP2Q9Y5Y2 271 aa14.08□□□□□ -0.16
UPF1-204ENST00000596842 M0R233 179 aa14.07□□□□□ -0.16
UPF1-204ENST00000596842 RAD1O60671 282 aa14.07□□□□□ -0.16
UPF1-204ENST00000596842 CTSVO60911 334 aa14.07□□□□□ -0.16
UPF1-204ENST00000596842 RAF1P04049 648 aa14.07□□□□□ -0.16
UPF1-204ENST00000596842 RLN1P04808 185 aa14.07□□□□□ -0.16
UPF1-204ENST00000596842 NDUFS1P28331 727 aa14.07□□□□□ -0.16
UPF1-204ENST00000596842 C2CD4CQ8TF44 421 aa14.07□□□□□ -0.16
UPF1-204ENST00000596842 IER2Q9BTL4 223 aa14.07□□□□□ -0.16
UPF1-204ENST00000596842 SLC17A9Q9BYT1 436 aa14.07□□□□□ -0.16
UPF1-204ENST00000596842 SIGLEC7Q9Y286 467 aa14.07□□□□□ -0.16
UPF1-204ENST00000596842 COL4A3Q01955 1670 aa14.07□□□□□ -0.16
UPF1-204ENST00000596842 OR6C74A6NCV1 312 aa14.07□□□□□ -0.16
UPF1-204ENST00000596842 C4orf47A7E2U8 309 aa14.07□□□□□ -0.16
UPF1-204ENST00000596842 ZNF593O00488 134 aaPredicted RBP14.07□□□□□ -0.16
UPF1-204ENST00000596842 LCN1P31025 176 aa14.07□□□□□ -0.16
UPF1-204ENST00000596842 PGDP52209 483 aa14.07□□□□□ -0.16
UPF1-204ENST00000596842 LGALSLQ3ZCW2 172 aaPredicted RBP14.07□□□□□ -0.16
UPF1-204ENST00000596842 KISS1RQ969F8 398 aaPredicted RBP14.07□□□□□ -0.16
UPF1-204ENST00000596842 KXD1Q9BQD3 176 aa14.07□□□□□ -0.16
UPF1-204ENST00000596842 SLCO1C1Q9NYB5 712 aa14.07□□□□□ -0.16
UPF1-204ENST00000596842 MGAT4CQ9UBM8 478 aa14.07□□□□□ -0.16
UPF1-204ENST00000596842 SCML1Q9UN30 329 aa14.07□□□□□ -0.16
UPF1-204ENST00000596842 KIF26AQ9ULI4 1882 aaPredicted RBP14.07□□□□□ -0.16
UPF1-204ENST00000596842 A0A1B0GWA3 101 aa14.07□□□□□ -0.16
UPF1-204ENST00000596842 METTL21EPA6NDL7 271 aa14.07□□□□□ -0.16
UPF1-204ENST00000596842 IFNGP01579 166 aa14.07□□□□□ -0.16
UPF1-204ENST00000596842 TNFRSF17Q02223 184 aa14.07□□□□□ -0.16
UPF1-204ENST00000596842 CMTM4Q8IZR5 234 aa14.07□□□□□ -0.16
UPF1-204ENST00000596842 TMEM52Q8NDY8 209 aa14.07□□□□□ -0.16
UPF1-204ENST00000596842 OR52I2Q8NH67 350 aa14.07□□□□□ -0.16
UPF1-204ENST00000596842 FOXN4Q96NZ1 517 aa14.07□□□□□ -0.16
UPF1-204ENST00000596842 TSPAN10Q9H1Z9 355 aaPredicted RBP14.07□□□□□ -0.16
UPF1-204ENST00000596842 KCMF1Q9P0J7 381 aa14.07□□□□□ -0.16
UPF1-204ENST00000596842 UBQLN2Q9UHD9 624 aa14.07□□□□□ -0.16
UPF1-204ENST00000596842 COLEC10Q9Y6Z7 277 aa14.07□□□□□ -0.16
UPF1-204ENST00000596842 SIX6O95475 246 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 TIMP1P01033 207 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 FBXO45P0C2W1 286 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 EPXP11678 715 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 GJA4P35212 333 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 BTG1P62324 171 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 HSF2Q03933 536 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 ERV3-1Q14264 604 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 FAM209BQ5JX69 171 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 ZCCHC12Q6PEW1 402 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 APOOLQ6UXV4 268 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 ZFP82Q8N141 532 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 LNX2Q8N448 690 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 MFSD9Q8NBP5 474 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 CT62P0C5K7 136 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 ANXA7P20073 488 aaKnown RBP14.06□□□□□ -0.16
UPF1-204ENST00000596842 Q6ZTK2 550 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 METTL27Q8N6F8 245 aaPredicted RBP14.06□□□□□ -0.16
UPF1-204ENST00000596842 ZNF511Q8NB15 262 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms