RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 TFAP2EQ6VUC0 442 aa11.09□□□□□ -0.63
UPF1-203ENST00000594504 ZNF836Q6ZNA1 936 aa11.09□□□□□ -0.63
UPF1-203ENST00000594504 SERPINA11Q86U17 422 aa11.09□□□□□ -0.63
UPF1-203ENST00000594504 GTF2IRD2Q86UP8 949 aa11.09□□□□□ -0.63
UPF1-203ENST00000594504 VRK2Q86Y07 508 aa11.09□□□□□ -0.63
UPF1-203ENST00000594504 PTOV1Q86YD1 416 aa11.09□□□□□ -0.63
UPF1-203ENST00000594504 TREML1Q86YW5 311 aa11.09□□□□□ -0.63
UPF1-203ENST00000594504 SLC30A8Q8IWU4 369 aa11.09□□□□□ -0.63
UPF1-203ENST00000594504 ZNF611Q8N823 705 aa11.09□□□□□ -0.63
UPF1-203ENST00000594504 HIPK4Q8NE63 616 aa11.09□□□□□ -0.63
UPF1-203ENST00000594504 TMEM234Q8WY98 164 aa11.09□□□□□ -0.63
UPF1-203ENST00000594504 CNOT9Q92600 299 aaKnown RBP11.09□□□□□ -0.63
UPF1-203ENST00000594504 ZNF775Q96BV0 537 aaPredicted RBP11.09□□□□□ -0.63
UPF1-203ENST00000594504 RCN3Q96D15 328 aa11.09□□□□□ -0.63
UPF1-203ENST00000594504 CMTM5Q96DZ9 223 aa11.09□□□□□ -0.63
UPF1-203ENST00000594504 CCT8L2Q96SF2 557 aa11.09□□□□□ -0.63
UPF1-203ENST00000594504 TMEM204Q9BSN7 226 aa11.09□□□□□ -0.63
UPF1-203ENST00000594504 SPATA5L1Q9BVQ7 753 aa11.09□□□□□ -0.63
UPF1-203ENST00000594504 SPATA9Q9BWV2 254 aa11.09□□□□□ -0.63
UPF1-203ENST00000594504 ADAM21Q9UKJ8 722 aa11.09□□□□□ -0.63
UPF1-203ENST00000594504 PRDM4Q9UKN5 801 aa11.09□□□□□ -0.63
UPF1-203ENST00000594504 ANGPT4Q9Y264 503 aa11.09□□□□□ -0.63
UPF1-203ENST00000594504 ARID1AO14497 2285 aa11.09□□□□□ -0.63
UPF1-203ENST00000594504 NF1P21359 2839 aa11.08□□□□□ -0.63
UPF1-203ENST00000594504 MTORP42345 2549 aa11.08□□□□□ -0.64
UPF1-203ENST00000594504 A0A1W2PNR3 127 aa11.08□□□□□ -0.64
UPF1-203ENST00000594504 FAAHO00519 579 aa11.08□□□□□ -0.64
UPF1-203ENST00000594504 SHOX2O60902 331 aaPredicted RBP11.08□□□□□ -0.64
UPF1-203ENST00000594504 DCTN3O75935 186 aa11.08□□□□□ -0.64
UPF1-203ENST00000594504 FAM107AO95990 144 aa11.08□□□□□ -0.64
UPF1-203ENST00000594504 ADAP00813 363 aa11.08□□□□□ -0.64
UPF1-203ENST00000594504 UQCRBP14927 111 aa11.08□□□□□ -0.64
UPF1-203ENST00000594504 PAX1P15863 534 aa11.08□□□□□ -0.64
UPF1-203ENST00000594504 PSMB1P20618 241 aaKnown RBP11.08□□□□□ -0.64
UPF1-203ENST00000594504 PRDX6P30041 224 aa11.08□□□□□ -0.64
UPF1-203ENST00000594504 RYKP34925 604 aa11.08□□□□□ -0.64
UPF1-203ENST00000594504 SESN3P58005 492 aa11.08□□□□□ -0.64
UPF1-203ENST00000594504 ZNF311Q5JNZ3 666 aa11.08□□□□□ -0.64
UPF1-203ENST00000594504 SFRP5Q5T4F7 317 aa11.08□□□□□ -0.64
UPF1-203ENST00000594504 FCRLAQ7L513 359 aa11.08□□□□□ -0.64
UPF1-203ENST00000594504 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.08□□□□□ -0.64
UPF1-203ENST00000594504 ARPINQ7Z6K5 226 aa11.08□□□□□ -0.64
UPF1-203ENST00000594504 STK32CQ86UX6 486 aa11.08□□□□□ -0.64
UPF1-203ENST00000594504 LSRQ86X29 649 aaPredicted RBP11.08□□□□□ -0.64
UPF1-203ENST00000594504 GABRG1Q8N1C3 465 aa11.08□□□□□ -0.64
UPF1-203ENST00000594504 ANKS4BQ8N8V4 417 aa11.08□□□□□ -0.64
UPF1-203ENST00000594504 OR10A6Q8NH74 314 aa11.08□□□□□ -0.64
UPF1-203ENST00000594504 ZNF563Q8TA94 476 aa11.08□□□□□ -0.64
UPF1-203ENST00000594504 RNF128Q8TEB7 428 aa11.08□□□□□ -0.64
UPF1-203ENST00000594504 REXO5Q96IC2 774 aaKnown RBP11.08□□□□□ -0.64
UPF1-203ENST00000594504 ZNF607Q96SK3 696 aa11.08□□□□□ -0.64
UPF1-203ENST00000594504 ECSITQ9BQ95 431 aa11.08□□□□□ -0.64
UPF1-203ENST00000594504 COQ10BQ9H8M1 238 aa11.08□□□□□ -0.64
UPF1-203ENST00000594504 EFCAB1Q9HAE3 211 aa11.08□□□□□ -0.64
UPF1-203ENST00000594504 ACER3Q9NUN7 267 aa11.08□□□□□ -0.64
UPF1-203ENST00000594504 ZNF701Q9NV72 531 aaPredicted RBP11.08□□□□□ -0.64
UPF1-203ENST00000594504 PRORSD1PA6NEY8 169 aa11.07□□□□□ -0.64
UPF1-203ENST00000594504 CFAP73A6NFT4 308 aa11.07□□□□□ -0.64
UPF1-203ENST00000594504 GJE1A6NN92 205 aa11.07□□□□□ -0.64
UPF1-203ENST00000594504 ZNF814B7Z6K7 855 aa11.07□□□□□ -0.64
UPF1-203ENST00000594504 AIM2O14862 343 aa11.07□□□□□ -0.64
UPF1-203ENST00000594504 CLOCKO15516 846 aa11.07□□□□□ -0.64
UPF1-203ENST00000594504 ADAM11O75078 769 aa11.07□□□□□ -0.64
UPF1-203ENST00000594504 SERPINB7O75635 380 aa11.07□□□□□ -0.64
UPF1-203ENST00000594504 PRKD3O94806 890 aa11.07□□□□□ -0.64
UPF1-203ENST00000594504 SOD3P08294 240 aa11.07□□□□□ -0.64
UPF1-203ENST00000594504 EDNRAP25101 427 aa11.07□□□□□ -0.64
UPF1-203ENST00000594504 PRKAR1BP31321 381 aa11.07□□□□□ -0.64
UPF1-203ENST00000594504 PCGF2P35227 344 aa11.07□□□□□ -0.64
UPF1-203ENST00000594504 CDKN1AP38936 164 aa11.07□□□□□ -0.64
UPF1-203ENST00000594504 GZMMP51124 257 aa11.07□□□□□ -0.64
UPF1-203ENST00000594504 PCBP3P57721 371 aaKnown RBP11.07□□□□□ -0.64
UPF1-203ENST00000594504 PPP2R2BQ00005 443 aa11.07□□□□□ -0.64
UPF1-203ENST00000594504 EPS8Q12929 822 aa11.07□□□□□ -0.64
UPF1-203ENST00000594504 SELENBP1Q13228 472 aa11.07□□□□□ -0.64
UPF1-203ENST00000594504 TAB1Q15750 504 aa11.07□□□□□ -0.64
UPF1-203ENST00000594504 NCMAPQ5T1S8 102 aa11.07□□□□□ -0.64
UPF1-203ENST00000594504 INTS11Q5TA45 600 aaKnown RBP11.07□□□□□ -0.64
UPF1-203ENST00000594504 GKAP1Q5VSY0 366 aaPredicted RBP11.07□□□□□ -0.64
UPF1-203ENST00000594504 C3orf33Q6P1S2 294 aa11.07□□□□□ -0.64
UPF1-203ENST00000594504 DHRS4L2Q6PKH6 230 aa11.07□□□□□ -0.64
UPF1-203ENST00000594504 CLIP4Q8N3C7 705 aa11.07□□□□□ -0.64
UPF1-203ENST00000594504 STEAP2Q8NFT2 490 aa11.07□□□□□ -0.64
UPF1-203ENST00000594504 SLC35B4Q969S0 331 aa11.07□□□□□ -0.64
UPF1-203ENST00000594504 CPNE4Q96A23 557 aaPredicted RBP11.07□□□□□ -0.64
UPF1-203ENST00000594504 LRRC37BQ96QE4 947 aa11.07□□□□□ -0.64
UPF1-203ENST00000594504 OR10A4Q9H209 315 aa11.07□□□□□ -0.64
UPF1-203ENST00000594504 CXorf56Q9H5V9 222 aa11.07□□□□□ -0.64
UPF1-203ENST00000594504 FANCFQ9NPI8 374 aa11.07□□□□□ -0.64
UPF1-203ENST00000594504 RLIMQ9NVW2 624 aa11.07□□□□□ -0.64
UPF1-203ENST00000594504 PRSS50Q9UI38 385 aa11.07□□□□□ -0.64
UPF1-203ENST00000594504 AP3M1Q9Y2T2 418 aa11.07□□□□□ -0.64
UPF1-203ENST00000594504 FREM1Q5H8C1 2179 aa11.07□□□□□ -0.64
UPF1-203ENST00000594504 RNF223E7ERA6 249 aa11.06□□□□□ -0.64
UPF1-203ENST00000594504 AP3D1O14617 1153 aa11.06□□□□□ -0.64
UPF1-203ENST00000594504 YES1P07947 543 aa11.06□□□□□ -0.64
UPF1-203ENST00000594504 AQP1P29972 269 aa11.06□□□□□ -0.64
UPF1-203ENST00000594504 APOBEC1P41238 236 aaKnown RBP11.06□□□□□ -0.64
UPF1-203ENST00000594504 HTR3AP46098 478 aa11.06□□□□□ -0.64
UPF1-203ENST00000594504 IDH2P48735 452 aaKnown RBP11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms