RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 SCP2D1Q9UJQ7 156 aa3.82□□□□□ -1.8
LIG3-211ENST00000588713 TCFL5Q9UL49 500 aa3.82□□□□□ -1.8
LIG3-211ENST00000588713 MGAT4AQ9UM21 535 aa3.82□□□□□ -1.8
LIG3-211ENST00000588713 WNK1Q9H4A3 2382 aa3.82□□□□□ -1.8
LIG3-211ENST00000588713 CNTRLQ7Z7A1 2325 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 MEIKINA0A087WXM9 373 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 A0A0A6YYJ9 748 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 LINC00854A0A1B0GVQ3 168 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 A0A1B0GW55 424 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 A0A1W2PPL8 197 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 MFSD2BA6NFX1 497 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 OR6C65A6NJZ3 312 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 FAM25EA8MYX2 175 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 KDM4EB2RXH2 506 aaPredicted RBP3.81□□□□□ -1.8
LIG3-211ENST00000588713 F5H5T6 163 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 M0R233 179 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 CLDN4O14493 209 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 SLC16A5O15375 505 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 FABP7O15540 132 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 PRODHO43272 600 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 TSPAN6O43657 245 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 AKAP8O43823 692 aaKnown RBP3.81□□□□□ -1.8
LIG3-211ENST00000588713 MMP20O60882 483 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 SMPD2O60906 423 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 TSC22D2O75157 780 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 ALOX12BO75342 701 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 B3GALNT1O75752 331 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 SCO1O75880 301 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 WISP2O76076 250 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 TOXO94900 526 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 AP2A2O94973 939 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 SOD1P00441 154 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 LALBAP00709 142 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 TRBC1P01850 177 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 TP53P04637 393 aaPredicted RBP3.81□□□□□ -1.8
LIG3-211ENST00000588713 PIRTP0C851 137 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 DUX4L2P0CJ85 424 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 DUX4L3P0CJ86 424 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 DUX4L4P0CJ87 422 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 DUX4L5P0CJ88 424 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 DUX4L6P0CJ89 424 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 DUX4L7P0CJ90 424 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 MPC1LP0DKB6 136 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 SULT1A3P0DMM9 295 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 SULT1A4P0DMN0 295 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 ACP2P11117 423 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 SRCP12931 536 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 UGT2B7P16662 529 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 CD53P19397 219 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 RAB3AP20336 220 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 TACR1P25103 407 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 ACRV1P26436 265 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 NOS3P29474 1203 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 BTCP35070 178 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 MMP12P39900 470 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 CD96P40200 585 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 CBX5P45973 191 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 GSTM5P46439 218 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 SLC11A2P49281 568 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 MTNR1BP49286 362 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 CCT3P49368 545 aaKnown RBP3.81□□□□□ -1.8
LIG3-211ENST00000588713 EVX1P49640 407 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 MAN2A2P49641 1150 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 CDKN1CP49918 316 aaPredicted RBP3.81□□□□□ -1.8
LIG3-211ENST00000588713 ZNF81P51508 661 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 XKP51811 444 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 GFERP55789 205 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 SMIM11AP58511 58 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 RPS25P62851 125 aaKnown RBP3.81□□□□□ -1.8
LIG3-211ENST00000588713 BDH1Q02338 343 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 TFF3Q07654 80 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 C2orf80Q0P641 193 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 SCRN3Q0VDG4 424 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 RAB40BQ12829 278 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 COX10Q12887 443 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 RPA4Q13156 261 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 NFATC2Q13469 925 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 SQSTM1Q13501 440 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 GPR176Q14439 515 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 ZNF267Q14586 743 aaPredicted RBP3.81□□□□□ -1.8
LIG3-211ENST00000588713 ZNF273Q14593 569 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 IL11RAQ14626 422 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 C18orf21Q32NC0 220 aaPredicted RBP3.81□□□□□ -1.8
LIG3-211ENST00000588713 MINDY4Q4G0A6 757 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 SGO1Q5FBB7 561 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 XKR6Q5GH73 641 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 EEF1AKMT2Q5JPI9 291 aaKnown RBP3.81□□□□□ -1.8
LIG3-211ENST00000588713 BCL2L15Q5TBC7 163 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 LIPKQ5VXJ0 399 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 LIPJQ5W064 366 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 FRG2Q64ET8 278 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 ZNF57Q68EA5 555 aaPredicted RBP3.81□□□□□ -1.8
LIG3-211ENST00000588713 HBMQ6B0K9 141 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 FRMPD2BQ6IN97 320 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 PYHIN1Q6K0P9 492 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 PWWP2BQ6NUJ5 590 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 FBXL22Q6P050 247 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 TRIM40Q6P9F5 258 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 WDR74Q6RFH5 385 aaPredicted RBP3.81□□□□□ -1.8
LIG3-211ENST00000588713 CD300LDQ6UXZ3 194 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms