RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 MCIDASD6RGH6 385 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 FOXD2O60548 495 aaPredicted RBP12.92□□□□□ -0.34
LIG3-205ENST00000585941 MT-ATP6P00846 226 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 IGHEP01854 428 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 ASAH2BP0C7U1 165 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 CCL4P13236 92 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 ZNF28P17035 718 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 EGR4Q05215 589 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 EXT1Q16394 746 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 ZNF404Q494X3 552 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 EMC4Q5J8M3 183 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 SLC35D3Q5M8T2 416 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 OR2G6Q5TZ20 316 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 LIPKQ5VXJ0 399 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 TCEAL6Q6IPX3 200 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 ZNF517Q6ZMY9 492 aaPredicted RBP12.92□□□□□ -0.34
LIG3-205ENST00000585941 SHFQ7M4L6 423 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 LHFPL3Q86UP9 236 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 SIRT6Q8N6T7 355 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 OR52E2Q8NGJ4 325 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 OR6Q1Q8NGQ2 317 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 GPR119Q8TDV5 335 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 DUSP19Q8WTR2 217 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 RNF138Q8WVD3 245 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 GATAD2BQ8WXI9 593 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 ST8SIA1Q92185 356 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 HGDQ93099 445 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 TCEAL3Q969E4 200 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 KISS1RQ969F8 398 aaPredicted RBP12.92□□□□□ -0.34
LIG3-205ENST00000585941 DEFB126Q9BYW3 111 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 OR51V1Q9H2C8 321 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 MED20Q9H944 212 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 SDHAF3Q9NRP4 125 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 TAS2R10Q9NYW0 307 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 MYOTQ9UBF9 498 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 PCDHGB7Q9Y5F8 929 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 WDR87Q6ZQQ6 2873 aa12.91□□□□□ -0.34
LIG3-205ENST00000585941 ANKUB1A6NFN9 424 aa12.91□□□□□ -0.34
LIG3-205ENST00000585941 SLC30A4O14863 429 aa12.91□□□□□ -0.34
LIG3-205ENST00000585941 GPX5O75715 221 aa12.91□□□□□ -0.34
LIG3-205ENST00000585941 CD14P08571 375 aa12.91□□□□□ -0.34
LIG3-205ENST00000585941 HIST1H1CP16403 213 aaKnown RBP12.91□□□□□ -0.34
LIG3-205ENST00000585941 MSX1P28360 303 aa12.91□□□□□ -0.34
LIG3-205ENST00000585941 GABRA5P31644 462 aa12.91□□□□□ -0.34
LIG3-205ENST00000585941 UQCRC1P31930 480 aa12.91□□□□□ -0.34
LIG3-205ENST00000585941 CRYBB2P43320 205 aa12.91□□□□□ -0.34
LIG3-205ENST00000585941 E2F1Q01094 437 aa12.91□□□□□ -0.34
LIG3-205ENST00000585941 GPR50Q13585 617 aa12.91□□□□□ -0.34
LIG3-205ENST00000585941 IL10RAQ13651 578 aa12.91□□□□□ -0.34
LIG3-205ENST00000585941 QPRTQ15274 297 aa12.91□□□□□ -0.34
LIG3-205ENST00000585941 DCAF12Q5T6F0 453 aa12.91□□□□□ -0.34
LIG3-205ENST00000585941 ZNF322Q6U7Q0 402 aaPredicted RBP12.91□□□□□ -0.34
LIG3-205ENST00000585941 FAM198BQ6UWH4 519 aa12.91□□□□□ -0.34
LIG3-205ENST00000585941 NANOGNBQ7Z5D8 188 aa12.91□□□□□ -0.34
LIG3-205ENST00000585941 GPALPP1Q8IXQ4 340 aa12.91□□□□□ -0.34
LIG3-205ENST00000585941 POMGNT2Q8NAT1 580 aa12.91□□□□□ -0.34
LIG3-205ENST00000585941 STK35Q8TDR2 534 aa12.91□□□□□ -0.34
LIG3-205ENST00000585941 ZNF649Q9BS31 505 aa12.91□□□□□ -0.34
LIG3-205ENST00000585941 HCAR1Q9BXC0 346 aa12.91□□□□□ -0.34
LIG3-205ENST00000585941 NXF2Q9GZY0 626 aaKnown RBP12.91□□□□□ -0.34
LIG3-205ENST00000585941 ZNF700Q9H0M5 742 aa12.91□□□□□ -0.34
LIG3-205ENST00000585941 EXOSC4Q9NPD3 245 aaKnown RBP12.91□□□□□ -0.34
LIG3-205ENST00000585941 PMF1-BGLAPU3KQ54 211 aa12.91□□□□□ -0.34
LIG3-205ENST00000585941 TMED7-TICAM2A0A0A6YYA0 188 aa12.9□□□□□ -0.34
LIG3-205ENST00000585941 DAPL1A0PJW8 107 aa12.9□□□□□ -0.34
LIG3-205ENST00000585941 METTL15A6NJ78 407 aa12.9□□□□□ -0.34
LIG3-205ENST00000585941 TMEM200CA6NKL6 621 aa12.9□□□□□ -0.34
LIG3-205ENST00000585941 C12orf71A8MTZ7 269 aa12.9□□□□□ -0.34
LIG3-205ENST00000585941 LRRN3E7EW58 273 aa12.9□□□□□ -0.34
LIG3-205ENST00000585941 ZNF670-ZNF695F2Z2N8 137 aa12.9□□□□□ -0.34
LIG3-205ENST00000585941 WWP2O00308 870 aa12.9□□□□□ -0.34
LIG3-205ENST00000585941 TXNDC12O95881 172 aa12.9□□□□□ -0.34
LIG3-205ENST00000585941 SBK2P0C263 348 aa12.9□□□□□ -0.34
LIG3-205ENST00000585941 OPRL1P41146 370 aa12.9□□□□□ -0.34
LIG3-205ENST00000585941 SLC16A1P53985 500 aa12.9□□□□□ -0.34
LIG3-205ENST00000585941 DLX5P56178 289 aa12.9□□□□□ -0.34
LIG3-205ENST00000585941 FBXW4P57775 412 aa12.9□□□□□ -0.34
LIG3-205ENST00000585941 RPS3AP61247 264 aaKnown RBP12.9□□□□□ -0.34
LIG3-205ENST00000585941 DOC2BQ14184 412 aa12.9□□□□□ -0.34
LIG3-205ENST00000585941 GALEQ14376 348 aa12.9□□□□□ -0.34
LIG3-205ENST00000585941 GGTLC2Q14390 218 aa12.9□□□□□ -0.34
LIG3-205ENST00000585941 ALG10Q5BKT4 473 aa12.9□□□□□ -0.34
LIG3-205ENST00000585941 GPR139Q6DWJ6 353 aa12.9□□□□□ -0.34
LIG3-205ENST00000585941 MAMDC2Q7Z304 686 aaPredicted RBP12.9□□□□□ -0.34
LIG3-205ENST00000585941 OR2Y1Q8NGV0 311 aa12.9□□□□□ -0.34
LIG3-205ENST00000585941 OR6S1Q8NH40 331 aa12.9□□□□□ -0.34
LIG3-205ENST00000585941 OR4K13Q8NH42 304 aa12.9□□□□□ -0.34
LIG3-205ENST00000585941 ELP5Q8TE02 316 aa12.9□□□□□ -0.34
LIG3-205ENST00000585941 THAP3Q8WTV1 239 aaPredicted RBP12.9□□□□□ -0.34
LIG3-205ENST00000585941 KTI12Q96EK9 354 aaPredicted RBP12.9□□□□□ -0.34
LIG3-205ENST00000585941 KATNB1Q9BVA0 655 aa12.9□□□□□ -0.34
LIG3-205ENST00000585941 AKIP1Q9NQ31 210 aa12.9□□□□□ -0.34
LIG3-205ENST00000585941 B3GNT3Q9Y2A9 372 aa12.9□□□□□ -0.34
LIG3-205ENST00000585941 TMED7Q9Y3B3 224 aa12.9□□□□□ -0.34
LIG3-205ENST00000585941 PTRH2Q9Y3E5 179 aaKnown RBP12.9□□□□□ -0.34
LIG3-205ENST00000585941 COL27A1Q8IZC6 1860 aaPredicted RBP12.9□□□□□ -0.34
LIG3-205ENST00000585941 A8MVM7 634 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 BLOC1S5-TXNDC5H3BN57 136 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 FBXO45P0C2W1 286 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 GALP22466 123 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms