RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 KLHL1Q9NR64 748 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 SIGLEC7Q9Y286 467 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 AKAP13Q12802 2813 aa13.79□□□□□ -0.2
SS18-215ENST00000580642 OR2M5A3KFT3 312 aa13.79□□□□□ -0.2
SS18-215ENST00000580642 PINLYPA6NC86 204 aa13.79□□□□□ -0.2
SS18-215ENST00000580642 H3BN98 237 aa13.79□□□□□ -0.2
SS18-215ENST00000580642 KPNA4O00629 521 aaPredicted RBP13.79□□□□□ -0.2
SS18-215ENST00000580642 CDC42EP2O14613 210 aa13.79□□□□□ -0.2
SS18-215ENST00000580642 BCKDKO14874 412 aa13.79□□□□□ -0.2
SS18-215ENST00000580642 PIP5K1CO60331 668 aa13.79□□□□□ -0.2
SS18-215ENST00000580642 TP53P04637 393 aaPredicted RBP13.79□□□□□ -0.2
SS18-215ENST00000580642 HIST1H2ABP04908 130 aa13.79□□□□□ -0.2
SS18-215ENST00000580642 HMGN1P05114 100 aa13.79□□□□□ -0.2
SS18-215ENST00000580642 APEHP13798 732 aaKnown RBP13.79□□□□□ -0.2
SS18-215ENST00000580642 IDUAP35475 653 aa13.79□□□□□ -0.2
SS18-215ENST00000580642 GIPRP48546 466 aa13.79□□□□□ -0.2
SS18-215ENST00000580642 ST13P50502 369 aaKnown RBP13.79□□□□□ -0.2
SS18-215ENST00000580642 B3GALT5-AS1P59052 145 aa13.79□□□□□ -0.2
SS18-215ENST00000580642 CDC42P60953 191 aa13.79□□□□□ -0.2
SS18-215ENST00000580642 CDK5Q00535 292 aa13.79□□□□□ -0.2
SS18-215ENST00000580642 PLGLB1Q02325 96 aa13.79□□□□□ -0.2
SS18-215ENST00000580642 TEKQ02763 1124 aa13.79□□□□□ -0.2
SS18-215ENST00000580642 ZNF169Q14929 603 aaPredicted RBP13.79□□□□□ -0.2
SS18-215ENST00000580642 PTGES3Q15185 160 aaKnown RBP13.79□□□□□ -0.2
SS18-215ENST00000580642 BCL2A1Q16548 175 aa13.79□□□□□ -0.2
SS18-215ENST00000580642 ZIK1Q3SY52 487 aaPredicted RBP13.79□□□□□ -0.2
SS18-215ENST00000580642 RAET1LQ5VY80 246 aa13.79□□□□□ -0.2
SS18-215ENST00000580642 SLX4IPQ5VYV7 408 aa13.79□□□□□ -0.2
SS18-215ENST00000580642 SLC27A4Q6P1M0 643 aa13.79□□□□□ -0.2
SS18-215ENST00000580642 HIST3H2AQ7L7L0 130 aa13.79□□□□□ -0.2
SS18-215ENST00000580642 SLC46A3Q7Z3Q1 461 aa13.79□□□□□ -0.2
SS18-215ENST00000580642 CHERPQ8IWX8 916 aaKnown RBP13.79□□□□□ -0.2
SS18-215ENST00000580642 ADPRHL1Q8NDY3 354 aa13.79□□□□□ -0.2
SS18-215ENST00000580642 FAM83FQ8NEG4 500 aaPredicted RBP13.79□□□□□ -0.2
SS18-215ENST00000580642 OR52L1Q8NGH7 329 aa13.79□□□□□ -0.2
SS18-215ENST00000580642 OR14L1PQ8NHC6 308 aa13.79□□□□□ -0.2
SS18-215ENST00000580642 ZCCHC14Q8WYQ9 949 aaKnown RBP13.79□□□□□ -0.2
SS18-215ENST00000580642 HIST1H2ACQ93077 130 aa13.79□□□□□ -0.2
SS18-215ENST00000580642 KTI12Q96EK9 354 aaPredicted RBP13.79□□□□□ -0.2
SS18-215ENST00000580642 PTDSS2Q9BVG9 487 aa13.79□□□□□ -0.2
SS18-215ENST00000580642 MRPL39Q9NYK5 338 aaKnown RBP13.79□□□□□ -0.2
SS18-215ENST00000580642 HIF3AQ9Y2N7 669 aa13.79□□□□□ -0.2
SS18-215ENST00000580642 GMPPBQ9Y5P6 360 aa13.79□□□□□ -0.2
SS18-215ENST00000580642 FREM2Q5SZK8 3169 aa13.78□□□□□ -0.2
SS18-215ENST00000580642 URB1O60287 2271 aaKnown RBP13.78□□□□□ -0.2
SS18-215ENST00000580642 C1QTNF9BB2RNN3 333 aa13.78□□□□□ -0.2
SS18-215ENST00000580642 FTCDNL1E5RQL4 147 aa13.78□□□□□ -0.2
SS18-215ENST00000580642 IDH3BO43837 385 aa13.78□□□□□ -0.2
SS18-215ENST00000580642 NDUFB2O95178 105 aa13.78□□□□□ -0.2
SS18-215ENST00000580642 CH25HO95992 272 aa13.78□□□□□ -0.2
SS18-215ENST00000580642 BGLAPP02818 100 aa13.78□□□□□ -0.2
SS18-215ENST00000580642 C1QTNF9P0C862 333 aa13.78□□□□□ -0.2
SS18-215ENST00000580642 SLC6A6P31641 620 aa13.78□□□□□ -0.2
SS18-215ENST00000580642 GGT2P36268 569 aa13.78□□□□□ -0.2
SS18-215ENST00000580642 PPIAP62937 165 aaKnown RBP13.78□□□□□ -0.2
SS18-215ENST00000580642 TOMM20Q15388 145 aa13.78□□□□□ -0.2
SS18-215ENST00000580642 ZNF239Q16600 458 aaKnown RBP13.78□□□□□ -0.2
SS18-215ENST00000580642 ZNF691Q5VV52 312 aa13.78□□□□□ -0.2
SS18-215ENST00000580642 ASB18Q6ZVZ8 466 aa13.78□□□□□ -0.2
SS18-215ENST00000580642 C8orf59Q8N0T1 100 aaPredicted RBP13.78□□□□□ -0.2
SS18-215ENST00000580642 TMEM251Q8N6I4 163 aa13.78□□□□□ -0.2
SS18-215ENST00000580642 OR2T33Q8NG76 320 aa13.78□□□□□ -0.2
SS18-215ENST00000580642 TAAR8Q969N4 342 aa13.78□□□□□ -0.2
SS18-215ENST00000580642 NR1H4Q96RI1 486 aaPredicted RBP13.78□□□□□ -0.2
SS18-215ENST00000580642 GPX7Q96SL4 187 aaPredicted RBP13.78□□□□□ -0.2
SS18-215ENST00000580642 TAPBPLQ9BX59 468 aa13.78□□□□□ -0.2
SS18-215ENST00000580642 ASPNQ9BXN1 380 aa13.78□□□□□ -0.2
SS18-215ENST00000580642 HES7Q9BYE0 225 aa13.78□□□□□ -0.2
SS18-215ENST00000580642 ZDHHC11Q9H8X9 412 aa13.78□□□□□ -0.2
SS18-215ENST00000580642 FANCFQ9NPI8 374 aa13.78□□□□□ -0.2
SS18-215ENST00000580642 B3GALT5Q9Y2C3 310 aa13.78□□□□□ -0.2
SS18-215ENST00000580642 SLC6A5Q9Y345 797 aa13.78□□□□□ -0.2
SS18-215ENST00000580642 M0R3G1 203 aa13.77□□□□□ -0.21
SS18-215ENST00000580642 SEC14L5O43304 696 aa13.77□□□□□ -0.21
SS18-215ENST00000580642 EFNA2O43921 213 aa13.77□□□□□ -0.21
SS18-215ENST00000580642 EIF1BO60739 113 aaKnown RBP13.77□□□□□ -0.21
SS18-215ENST00000580642 TRAPPC6AO75865 159 aa13.77□□□□□ -0.21
SS18-215ENST00000580642 PMS2P2O95744 297 aa13.77□□□□□ -0.21
SS18-215ENST00000580642 ACTL6AO96019 429 aa13.77□□□□□ -0.21
SS18-215ENST00000580642 RFPL3SP0C7P2 107 aa13.77□□□□□ -0.21
SS18-215ENST00000580642 POLR2IP36954 125 aaKnown RBP13.77□□□□□ -0.21
SS18-215ENST00000580642 RPS5P46782 204 aaKnown RBP13.77□□□□□ -0.21
SS18-215ENST00000580642 GFRA1P56159 465 aa13.77□□□□□ -0.21
SS18-215ENST00000580642 CSNK2A1P68400 391 aaPredicted RBP13.77□□□□□ -0.21
SS18-215ENST00000580642 ZP4Q12836 540 aa13.77□□□□□ -0.21
SS18-215ENST00000580642 SLC10A1Q14973 349 aa13.77□□□□□ -0.21
SS18-215ENST00000580642 SGCBQ16585 318 aa13.77□□□□□ -0.21
SS18-215ENST00000580642 C12orf73Q69YU5 71 aa13.77□□□□□ -0.21
SS18-215ENST00000580642 POMZP3Q6PJE2 187 aa13.77□□□□□ -0.21
SS18-215ENST00000580642 CASP12Q6UXS9 341 aa13.77□□□□□ -0.21
SS18-215ENST00000580642 DPY19L2P2Q6ZN68 376 aa13.77□□□□□ -0.21
SS18-215ENST00000580642 ESPNLQ6ZVH7 1005 aa13.77□□□□□ -0.21
SS18-215ENST00000580642 THAP5Q7Z6K1 395 aa13.77□□□□□ -0.21
SS18-215ENST00000580642 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.77□□□□□ -0.21
SS18-215ENST00000580642 KIF18BQ86Y91 864 aa13.77□□□□□ -0.21
SS18-215ENST00000580642 C10orf53Q8N6V4 93 aa13.77□□□□□ -0.21
SS18-215ENST00000580642 OR5J2Q8NH18 312 aa13.77□□□□□ -0.21
SS18-215ENST00000580642 FANK1Q8TC84 345 aa13.77□□□□□ -0.21
SS18-215ENST00000580642 MIB2Q96AX9 1013 aa13.77□□□□□ -0.21
SS18-215ENST00000580642 SFXN2Q96NB2 322 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms