RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 CDKN2CP42773 168 aa12.77□□□□□ -0.37
SMARCE1-216ENST00000580419 FADDQ13158 208 aa12.77□□□□□ -0.37
SMARCE1-216ENST00000580419 LARS2Q15031 903 aaKnown RBP12.77□□□□□ -0.37
SMARCE1-216ENST00000580419 MAPK11Q15759 364 aa12.77□□□□□ -0.37
SMARCE1-216ENST00000580419 WBP2NLQ6ICG8 309 aa12.77□□□□□ -0.37
SMARCE1-216ENST00000580419 ABHD12BQ7Z5M8 362 aaPredicted RBP12.77□□□□□ -0.37
SMARCE1-216ENST00000580419 POMGNT2Q8NAT1 580 aa12.77□□□□□ -0.37
SMARCE1-216ENST00000580419 ANKK1Q8NFD2 765 aa12.77□□□□□ -0.37
SMARCE1-216ENST00000580419 STON2Q8WXE9 905 aa12.77□□□□□ -0.37
SMARCE1-216ENST00000580419 PAIP2Q9BPZ3 127 aaKnown RBP12.77□□□□□ -0.37
SMARCE1-216ENST00000580419 TPT1P8Q9HAU6 139 aa12.77□□□□□ -0.37
SMARCE1-216ENST00000580419 C12orf10Q9HB07 376 aa12.77□□□□□ -0.37
SMARCE1-216ENST00000580419 CISD1Q9NZ45 108 aaKnown RBP12.77□□□□□ -0.37
SMARCE1-216ENST00000580419 ZNF232Q9UNY5 417 aa12.77□□□□□ -0.37
SMARCE1-216ENST00000580419 CHD3Q12873 2000 aaKnown RBP12.77□□□□□ -0.37
SMARCE1-216ENST00000580419 RTTNQ86VV8 2226 aa12.77□□□□□ -0.37
SMARCE1-216ENST00000580419 CR1P17927 2039 aa12.76□□□□□ -0.37
SMARCE1-216ENST00000580419 TMEM247A6NEH6 219 aa12.76□□□□□ -0.37
SMARCE1-216ENST00000580419 TRIM64A6NGJ6 449 aa12.76□□□□□ -0.37
SMARCE1-216ENST00000580419 TRIM64BA6NI03 449 aa12.76□□□□□ -0.37
SMARCE1-216ENST00000580419 CLDN24A6NM45 220 aa12.76□□□□□ -0.37
SMARCE1-216ENST00000580419 NPIPB7O75200 414 aa12.76□□□□□ -0.37
SMARCE1-216ENST00000580419 EDNRAP25101 427 aa12.76□□□□□ -0.37
SMARCE1-216ENST00000580419 NTF4P34130 210 aa12.76□□□□□ -0.37
SMARCE1-216ENST00000580419 TSC22D1Q15714 1073 aa12.76□□□□□ -0.37
SMARCE1-216ENST00000580419 GABRA6Q16445 453 aa12.76□□□□□ -0.37
SMARCE1-216ENST00000580419 COX20Q5RI15 118 aa12.76□□□□□ -0.37
SMARCE1-216ENST00000580419 AGAP6Q5VW22 663 aa12.76□□□□□ -0.37
SMARCE1-216ENST00000580419 ZNF544Q6NX49 715 aa12.76□□□□□ -0.37
SMARCE1-216ENST00000580419 C5orf46Q6UWT4 87 aa12.76□□□□□ -0.37
SMARCE1-216ENST00000580419 OLIG3Q7RTU3 272 aa12.76□□□□□ -0.37
SMARCE1-216ENST00000580419 STK35Q8TDR2 534 aa12.76□□□□□ -0.37
SMARCE1-216ENST00000580419 SLC38A5Q8WUX1 472 aa12.76□□□□□ -0.37
SMARCE1-216ENST00000580419 C7orf26Q96N11 449 aa12.76□□□□□ -0.37
SMARCE1-216ENST00000580419 SPATA9Q9BWV2 254 aa12.76□□□□□ -0.37
SMARCE1-216ENST00000580419 OR11A1Q9GZK7 315 aa12.76□□□□□ -0.37
SMARCE1-216ENST00000580419 ALG2Q9H553 416 aa12.76□□□□□ -0.37
SMARCE1-216ENST00000580419 TMBIM4Q9HC24 238 aa12.76□□□□□ -0.37
SMARCE1-216ENST00000580419 AMDHD2Q9Y303 409 aa12.76□□□□□ -0.37
SMARCE1-216ENST00000580419 YLPM1P49750 1951 aaKnown RBP12.76□□□□□ -0.37
SMARCE1-216ENST00000580419 CIB4A0PJX0 185 aa12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 LIPT2A6NK58 231 aa12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 AQP7P3A6NL99 342 aa12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 A8MVM7 634 aa12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 AP3D1O14617 1153 aa12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 UBDO15205 165 aa12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 CLOCKO15516 846 aa12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 CD8AP01732 235 aa12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 IMPDH2P12268 514 aa12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 ETS2P15036 469 aa12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 CXCR1P25024 350 aa12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 CD40P25942 277 aa12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 MPGP29372 298 aa12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 POLR2JP52435 117 aaKnown RBP12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 OR2B6P58173 313 aa12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 DSCR9P59020 149 aa12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 DSTNP60981 165 aa12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 COPZ1P61923 177 aa12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 CLEC12BQ2HXU8 276 aa12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 C3orf36Q3SXR2 165 aa12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 BEND6Q5SZJ8 279 aaPredicted RBP12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 EPGNQ6UW88 154 aa12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 C6orf89Q6UWU4 347 aa12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 MIER2Q8N344 545 aa12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 FAM169BQ8N8A8 192 aa12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 ANKRD42Q8N9B4 389 aa12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 KBTBD8Q8NFY9 601 aa12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 OR52P1PQ8NH57 321 aa12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 GTF2H4Q92759 462 aa12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 DHRS9Q9BPW9 319 aa12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 SLCO5A1Q9H2Y9 848 aa12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 EVA1AQ9H8M9 152 aa12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 A4GALTQ9NPC4 353 aa12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 NPAP1Q9NZP6 1156 aa12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 MXRA5Q9NR99 2828 aa12.75□□□□□ -0.37
SMARCE1-216ENST00000580419 DNHD1Q96M86 4753 aa12.74□□□□□ -0.37
SMARCE1-216ENST00000580419 LOC102725191A0A1B0GVB3 256 aa12.74□□□□□ -0.37
SMARCE1-216ENST00000580419 TMEM72A0PK05 275 aa12.74□□□□□ -0.37
SMARCE1-216ENST00000580419 ABCD4O14678 606 aa12.74□□□□□ -0.37
SMARCE1-216ENST00000580419 TLX2O43763 284 aaPredicted RBP12.74□□□□□ -0.37
SMARCE1-216ENST00000580419 ANP32DO95626 131 aa12.74□□□□□ -0.37
SMARCE1-216ENST00000580419 GSNP06396 782 aa12.74□□□□□ -0.37
SMARCE1-216ENST00000580419 ITGA5P08648 1049 aa12.74□□□□□ -0.37
SMARCE1-216ENST00000580419 HOXB1P14653 301 aaPredicted RBP12.74□□□□□ -0.37
SMARCE1-216ENST00000580419 HOXB9P17482 250 aaPredicted RBP12.74□□□□□ -0.37
SMARCE1-216ENST00000580419 PPIBP23284 216 aaKnown RBP12.74□□□□□ -0.37
SMARCE1-216ENST00000580419 TTKP33981 857 aa12.74□□□□□ -0.37
SMARCE1-216ENST00000580419 MAGOHP61326 146 aaKnown RBP12.74□□□□□ -0.37
SMARCE1-216ENST00000580419 TNK1Q13470 666 aa12.74□□□□□ -0.37
SMARCE1-216ENST00000580419 STK11Q15831 433 aa12.74□□□□□ -0.37
SMARCE1-216ENST00000580419 LRIF1Q5T3J3 769 aa12.74□□□□□ -0.37
SMARCE1-216ENST00000580419 C11orf71Q6IPW1 123 aa12.74□□□□□ -0.37
SMARCE1-216ENST00000580419 CCDC103Q8IW40 242 aa12.74□□□□□ -0.37
SMARCE1-216ENST00000580419 DEPDC4Q8N2C3 294 aa12.74□□□□□ -0.37
SMARCE1-216ENST00000580419 UBE2J2Q8N2K1 259 aa12.74□□□□□ -0.37
SMARCE1-216ENST00000580419 LSMEM1Q8N8F7 131 aa12.74□□□□□ -0.37
SMARCE1-216ENST00000580419 MFSD8Q8NHS3 518 aa12.74□□□□□ -0.37
SMARCE1-216ENST00000580419 CACYBPQ9HB71 228 aaKnown RBP12.74□□□□□ -0.37
SMARCE1-216ENST00000580419 SLC6A13Q9NSD5 602 aa12.74□□□□□ -0.37
SMARCE1-216ENST00000580419 CBLN4Q9NTU7 201 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms