RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 ABLIM2Q6H8Q1 611 aa17.34■□□□□ 0.37
SS18-209ENST00000578595 ALKBH2Q6NS38 261 aa17.34■□□□□ 0.37
SS18-209ENST00000578595 CCDC168Q8NDH2 2452 aa17.34■□□□□ 0.37
SS18-209ENST00000578595 PRR14Q9BWN1 585 aa17.34■□□□□ 0.37
SS18-209ENST00000578595 TRIM2Q9C040 744 aa17.34■□□□□ 0.37
SS18-209ENST00000578595 TMEM27Q9HBJ8 222 aa17.34■□□□□ 0.37
SS18-209ENST00000578595 GP6Q9HCN6 339 aa17.34■□□□□ 0.37
SS18-209ENST00000578595 PRR14LQ5THK1 2151 aa17.33■□□□□ 0.37
SS18-209ENST00000578595 FBN2P35556 2912 aa17.33■□□□□ 0.37
SS18-209ENST00000578595 A0A1B0GWA3 101 aa17.33■□□□□ 0.36
SS18-209ENST00000578595 CCT8L1PA6NM43 557 aa17.33■□□□□ 0.36
SS18-209ENST00000578595 DNPH1O43598 174 aa17.33■□□□□ 0.36
SS18-209ENST00000578595 SNX3O60493 162 aa17.33■□□□□ 0.36
SS18-209ENST00000578595 EIF1BO60739 113 aaKnown RBP17.33■□□□□ 0.36
SS18-209ENST00000578595 HTR2AP28223 471 aa17.33■□□□□ 0.36
SS18-209ENST00000578595 CCKARP32238 428 aa17.33■□□□□ 0.36
SS18-209ENST00000578595 LRRC23Q53EV4 343 aaPredicted RBP17.33■□□□□ 0.36
SS18-209ENST00000578595 OTUD3Q5T2D3 398 aaPredicted RBP17.33■□□□□ 0.36
SS18-209ENST00000578595 C1orf140Q5VVS0 124 aa17.33■□□□□ 0.36
SS18-209ENST00000578595 ERICH5Q6P6B1 374 aa17.33■□□□□ 0.36
SS18-209ENST00000578595 GALNT5Q7Z7M9 940 aa17.33■□□□□ 0.36
SS18-209ENST00000578595 ATG4DQ86TL0 474 aaPredicted RBP17.33■□□□□ 0.36
SS18-209ENST00000578595 CCDC103Q8IW40 242 aa17.33■□□□□ 0.36
SS18-209ENST00000578595 SLC25A36Q96CQ1 311 aa17.33■□□□□ 0.36
SS18-209ENST00000578595 DACH2Q96NX9 599 aa17.33■□□□□ 0.36
SS18-209ENST00000578595 CLEC4MQ9H2X3 399 aaPredicted RBP17.33■□□□□ 0.36
SS18-209ENST00000578595 BCO1Q9HAY6 547 aa17.33■□□□□ 0.36
SS18-209ENST00000578595 ZNF226Q9NYT6 803 aa17.33■□□□□ 0.36
SS18-209ENST00000578595 USP22Q9UPT9 525 aa17.33■□□□□ 0.36
SS18-209ENST00000578595 TRAPPC4Q9Y296 219 aa17.33■□□□□ 0.36
SS18-209ENST00000578595 NOSIPQ9Y314 301 aaKnown RBP17.33■□□□□ 0.36
SS18-209ENST00000578595 AKR7A3O95154 331 aa17.32■□□□□ 0.36
SS18-209ENST00000578595 PTNP21246 168 aa17.32■□□□□ 0.36
SS18-209ENST00000578595 TFAP2EQ6VUC0 442 aa17.32■□□□□ 0.36
SS18-209ENST00000578595 ARPINQ7Z6K5 226 aa17.32■□□□□ 0.36
SS18-209ENST00000578595 GPAT4Q86UL3 456 aa17.32■□□□□ 0.36
SS18-209ENST00000578595 TREML1Q86YW5 311 aa17.32■□□□□ 0.36
SS18-209ENST00000578595 UBE2J2Q8N2K1 259 aa17.32■□□□□ 0.36
SS18-209ENST00000578595 OR2T12Q8NG77 320 aa17.32■□□□□ 0.36
SS18-209ENST00000578595 RASSF5Q8WWW0 418 aa17.32■□□□□ 0.36
SS18-209ENST00000578595 RSPO3Q9BXY4 272 aaPredicted RBP17.32■□□□□ 0.36
SS18-209ENST00000578595 POTEKPQ9BYX7 375 aa17.32■□□□□ 0.36
SS18-209ENST00000578595 EFCAB1Q9HAE3 211 aa17.32■□□□□ 0.36
SS18-209ENST00000578595 PRDM4Q9UKN5 801 aa17.32■□□□□ 0.36
SS18-209ENST00000578595 MYO9AB2RTY4 2548 aa17.32■□□□□ 0.36
SS18-209ENST00000578595 LIPT2A6NK58 231 aa17.31■□□□□ 0.36
SS18-209ENST00000578595 ZNF724A8MTY0 619 aa17.31■□□□□ 0.36
SS18-209ENST00000578595 FAM220BPB1ANY3 271 aa17.31■□□□□ 0.36
SS18-209ENST00000578595 ZNF814B7Z6K7 855 aa17.31■□□□□ 0.36
SS18-209ENST00000578595 GPR171O14626 319 aa17.31■□□□□ 0.36
SS18-209ENST00000578595 RAMP1O60894 148 aa17.31■□□□□ 0.36
SS18-209ENST00000578595 IL32P24001 234 aa17.31■□□□□ 0.36
SS18-209ENST00000578595 RPS5P46782 204 aaKnown RBP17.31■□□□□ 0.36
SS18-209ENST00000578595 GZMMP51124 257 aa17.31■□□□□ 0.36
SS18-209ENST00000578595 OR1Q1Q15612 314 aa17.31■□□□□ 0.36
SS18-209ENST00000578595 DUSP7Q16829 419 aa17.31■□□□□ 0.36
SS18-209ENST00000578595 ULK3Q6PHR2 472 aa17.31■□□□□ 0.36
SS18-209ENST00000578595 CASP12Q6UXS9 341 aa17.31■□□□□ 0.36
SS18-209ENST00000578595 CDH24Q86UP0 819 aa17.31■□□□□ 0.36
SS18-209ENST00000578595 CXorf67Q86X51 503 aaPredicted RBP17.31■□□□□ 0.36
SS18-209ENST00000578595 DNAJA4Q8WW22 397 aaPredicted RBP17.31■□□□□ 0.36
SS18-209ENST00000578595 PROX1Q92786 737 aa17.31■□□□□ 0.36
SS18-209ENST00000578595 TAMM41Q96BW9 452 aa17.31■□□□□ 0.36
SS18-209ENST00000578595 SLC47A1Q96FL8 570 aa17.31■□□□□ 0.36
SS18-209ENST00000578595 WFIKKN1Q96NZ8 548 aa17.31■□□□□ 0.36
SS18-209ENST00000578595 MCHR1Q99705 422 aa17.31■□□□□ 0.36
SS18-209ENST00000578595 EVA1AQ9H8M9 152 aa17.31■□□□□ 0.36
SS18-209ENST00000578595 PRSS50Q9UI38 385 aa17.31■□□□□ 0.36
SS18-209ENST00000578595 TESMINQ9Y4I5 508 aa17.31■□□□□ 0.36
SS18-209ENST00000578595 HRNRQ86YZ3 2850 aaPredicted RBP17.3■□□□□ 0.36
SS18-209ENST00000578595 CPSF4LA6NMK7 179 aaKnown RBP17.3■□□□□ 0.36
SS18-209ENST00000578595 TMEM229AB2RXF0 380 aa17.3■□□□□ 0.36
SS18-209ENST00000578595 CTAG2O75638 210 aa17.3■□□□□ 0.36
SS18-209ENST00000578595 IGHV3-9P01782 118 aa17.3■□□□□ 0.36
SS18-209ENST00000578595 PNMTP11086 282 aa17.3■□□□□ 0.36
SS18-209ENST00000578595 OR3A2P47893 321 aa17.3■□□□□ 0.36
SS18-209ENST00000578595 IL1RL1Q01638 556 aa17.3■□□□□ 0.36
SS18-209ENST00000578595 PAQR6Q6TCH4 344 aa17.3■□□□□ 0.36
SS18-209ENST00000578595 STAC2Q6ZMT1 411 aa17.3■□□□□ 0.36
SS18-209ENST00000578595 CALHM3Q86XJ0 350 aa17.3■□□□□ 0.36
SS18-209ENST00000578595 P3H2Q8IVL5 708 aa17.3■□□□□ 0.36
SS18-209ENST00000578595 C10orf53Q8N6V4 93 aa17.3■□□□□ 0.36
SS18-209ENST00000578595 TMEM99Q8N816 258 aa17.3■□□□□ 0.36
SS18-209ENST00000578595 GPR32P1Q8NGA4 272 aa17.3■□□□□ 0.36
SS18-209ENST00000578595 STK35Q8TDR2 534 aa17.3■□□□□ 0.36
SS18-209ENST00000578595 APH1AQ96BI3 265 aa17.3■□□□□ 0.36
SS18-209ENST00000578595 CMTM5Q96DZ9 223 aa17.3■□□□□ 0.36
SS18-209ENST00000578595 ARHGDIGQ99819 225 aa17.3■□□□□ 0.36
SS18-209ENST00000578595 ACTR6Q9GZN1 396 aa17.3■□□□□ 0.36
SS18-209ENST00000578595 RASSF1Q9NS23 344 aa17.3■□□□□ 0.36
SS18-209ENST00000578595 ING1Q9UK53 422 aaPredicted RBP17.3■□□□□ 0.36
SS18-209ENST00000578595 ITGB1BP2Q9UKP3 347 aa17.3■□□□□ 0.36
SS18-209ENST00000578595 SLC9A8Q9Y2E8 581 aa17.3■□□□□ 0.36
SS18-209ENST00000578595 ZNF716A6NP11 495 aa17.29■□□□□ 0.36
SS18-209ENST00000578595 GSTA4O15217 222 aa17.29■□□□□ 0.36
SS18-209ENST00000578595 MRPL33O75394 65 aaKnown RBP17.29■□□□□ 0.36
SS18-209ENST00000578595 GCM2O75603 506 aaPredicted RBP17.29■□□□□ 0.36
SS18-209ENST00000578595 LGI1O95970 557 aa17.29■□□□□ 0.36
SS18-209ENST00000578595 ADAP00813 363 aa17.29■□□□□ 0.36
SS18-209ENST00000578595 IFNA14P01570 189 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms