RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 C1QCP02747 245 aa18.45■□□□□ 0.54
VPS53-216ENST00000574029 SERPINE1P05121 402 aa18.45■□□□□ 0.54
VPS53-216ENST00000574029 CSF3P09919 207 aa18.45■□□□□ 0.54
VPS53-216ENST00000574029 MYZAPP0CAP1 466 aa18.45■□□□□ 0.54
VPS53-216ENST00000574029 BMP4P12644 408 aa18.45■□□□□ 0.54
VPS53-216ENST00000574029 TACR3P29371 465 aa18.45■□□□□ 0.54
VPS53-216ENST00000574029 APOBEC3AP31941 199 aaPredicted RBP18.45■□□□□ 0.54
VPS53-216ENST00000574029 CHI3L1P36222 383 aaPredicted RBP18.45■□□□□ 0.54
VPS53-216ENST00000574029 MAP2K6P52564 334 aa18.45■□□□□ 0.54
VPS53-216ENST00000574029 CHRNB3Q05901 458 aa18.45■□□□□ 0.54
VPS53-216ENST00000574029 SLC17A1Q14916 467 aa18.45■□□□□ 0.54
VPS53-216ENST00000574029 DPY19L1Q2PZI1 675 aa18.45■□□□□ 0.54
VPS53-216ENST00000574029 SPANXN4Q5MJ08 99 aa18.45■□□□□ 0.54
VPS53-216ENST00000574029 TSPO2Q5TGU0 170 aa18.45■□□□□ 0.54
VPS53-216ENST00000574029 C9orf135Q5VTT2 229 aa18.45■□□□□ 0.54
VPS53-216ENST00000574029 NANOS1Q8WY41 292 aaKnown RBP18.45■□□□□ 0.54
VPS53-216ENST00000574029 TMEM45BQ96B21 275 aa18.45■□□□□ 0.54
VPS53-216ENST00000574029 PKNOX2Q96KN3 472 aa18.45■□□□□ 0.54
VPS53-216ENST00000574029 TRNT1Q96Q11 434 aaKnown RBP18.45■□□□□ 0.54
VPS53-216ENST00000574029 EPB41L3Q9Y2J2 1087 aaPredicted RBP18.45■□□□□ 0.54
VPS53-216ENST00000574029 HEATR1Q9H583 2144 aaKnown RBP18.44■□□□□ 0.54
VPS53-216ENST00000574029 AGAP5A6NIR3 686 aa18.44■□□□□ 0.54
VPS53-216ENST00000574029 ABCE1P61221 599 aaKnown RBP18.44■□□□□ 0.54
VPS53-216ENST00000574029 TGFBR3Q03167 851 aa18.44■□□□□ 0.54
VPS53-216ENST00000574029 CYB5R2Q6BCY4 276 aa18.44■□□□□ 0.54
VPS53-216ENST00000574029 PAQR6Q6TCH4 344 aa18.44■□□□□ 0.54
VPS53-216ENST00000574029 LSRQ86X29 649 aaPredicted RBP18.44■□□□□ 0.54
VPS53-216ENST00000574029 LRRC34Q8IZ02 419 aa18.44■□□□□ 0.54
VPS53-216ENST00000574029 ANKFN1Q8N957 763 aa18.44■□□□□ 0.54
VPS53-216ENST00000574029 CCDC115Q96NT0 180 aa18.44■□□□□ 0.54
VPS53-216ENST00000574029 C20orf27Q9GZN8 174 aa18.44■□□□□ 0.54
VPS53-216ENST00000574029 SLC38A1Q9H2H9 487 aa18.44■□□□□ 0.54
VPS53-216ENST00000574029 BTNL2Q9UIR0 455 aa18.44■□□□□ 0.54
VPS53-216ENST00000574029 RAP2CQ9Y3L5 183 aa18.44■□□□□ 0.54
VPS53-216ENST00000574029 PMF1-BGLAPU3KQ54 211 aa18.44■□□□□ 0.54
VPS53-216ENST00000574029 ZC3H12DA2A288 527 aaKnown RBP18.43■□□□□ 0.54
VPS53-216ENST00000574029 WDR91A4D1P6 747 aa18.43■□□□□ 0.54
VPS53-216ENST00000574029 IGHV4-31P0DP07 118 aa18.43■□□□□ 0.54
VPS53-216ENST00000574029 RPS4Y1P22090 263 aaKnown RBP18.43■□□□□ 0.54
VPS53-216ENST00000574029 MPGP29372 298 aa18.43■□□□□ 0.54
VPS53-216ENST00000574029 SLC1A3P43003 542 aa18.43■□□□□ 0.54
VPS53-216ENST00000574029 RPL14P50914 215 aaKnown RBP18.43■□□□□ 0.54
VPS53-216ENST00000574029 CLNS1AP54105 237 aaKnown RBP18.43■□□□□ 0.54
VPS53-216ENST00000574029 CHI3L2Q15782 390 aa18.43■□□□□ 0.54
VPS53-216ENST00000574029 SYPL1Q16563 259 aa18.43■□□□□ 0.54
VPS53-216ENST00000574029 FAM174BQ3ZCQ3 159 aa18.43■□□□□ 0.54
VPS53-216ENST00000574029 RNF130Q86XS8 419 aa18.43■□□□□ 0.54
VPS53-216ENST00000574029 BOD1Q96IK1 185 aa18.43■□□□□ 0.54
VPS53-216ENST00000574029 BEX2Q9BXY8 128 aa18.43■□□□□ 0.54
VPS53-216ENST00000574029 TMBIM4Q9HC24 238 aa18.43■□□□□ 0.54
VPS53-216ENST00000574029 LPAR3Q9UBY5 353 aa18.43■□□□□ 0.54
VPS53-216ENST00000574029 STAB1Q9NY15 2570 aa18.43■□□□□ 0.54
VPS53-216ENST00000574029 E9PBE3 544 aa18.42■□□□□ 0.54
VPS53-216ENST00000574029 ATP6V1G2-DDX39BF2Z307 99 aa18.42■□□□□ 0.54
VPS53-216ENST00000574029 BIRC5O15392 142 aa18.42■□□□□ 0.54
VPS53-216ENST00000574029 SNUPNO95149 360 aaKnown RBP18.42■□□□□ 0.54
VPS53-216ENST00000574029 F12P00748 615 aaPredicted RBP18.42■□□□□ 0.54
VPS53-216ENST00000574029 CHRM4P08173 479 aa18.42■□□□□ 0.54
VPS53-216ENST00000574029 LBPP18428 481 aa18.42■□□□□ 0.54
VPS53-216ENST00000574029 USF1P22415 310 aaPredicted RBP18.42■□□□□ 0.54
VPS53-216ENST00000574029 S100A3P33764 101 aa18.42■□□□□ 0.54
VPS53-216ENST00000574029 PRPS1P60891 318 aa18.42■□□□□ 0.54
VPS53-216ENST00000574029 TXNL4AP83876 142 aaKnown RBP18.42■□□□□ 0.54
VPS53-216ENST00000574029 MPP2Q14168 576 aa18.42■□□□□ 0.54
VPS53-216ENST00000574029 SWI5Q1ZZU3 235 aa18.42■□□□□ 0.54
VPS53-216ENST00000574029 MST1LQ2TV78 715 aa18.42■□□□□ 0.54
VPS53-216ENST00000574029 LRRC74BQ6ZQY2 392 aa18.42■□□□□ 0.54
VPS53-216ENST00000574029 ZIC4Q8N9L1 334 aa18.42■□□□□ 0.54
VPS53-216ENST00000574029 WDR60Q8WVS4 1066 aa18.42■□□□□ 0.54
VPS53-216ENST00000574029 SORT1Q99523 831 aa18.42■□□□□ 0.54
VPS53-216ENST00000574029 SF3B5Q9BWJ5 86 aaKnown RBP18.42■□□□□ 0.54
VPS53-216ENST00000574029 ADAM19Q9H013 955 aa18.42■□□□□ 0.54
VPS53-216ENST00000574029 MTHFD2LQ9H903 347 aaPredicted RBP18.42■□□□□ 0.54
VPS53-216ENST00000574029 HAO1Q9UJM8 370 aa18.42■□□□□ 0.54
VPS53-216ENST00000574029 CFAP73A6NFT4 308 aa18.41■□□□□ 0.54
VPS53-216ENST00000574029 VWC2LB2RUY7 222 aa18.41■□□□□ 0.54
VPS53-216ENST00000574029 LY6HO94772 140 aa18.41■□□□□ 0.54
VPS53-216ENST00000574029 WNT11O96014 354 aa18.41■□□□□ 0.54
VPS53-216ENST00000574029 H2AFXP16104 143 aaPredicted RBP18.41■□□□□ 0.54
VPS53-216ENST00000574029 ZNF16P17020 682 aaPredicted RBP18.41■□□□□ 0.54
VPS53-216ENST00000574029 SLC18A1P54219 525 aa18.41■□□□□ 0.54
VPS53-216ENST00000574029 LSM11P83369 360 aaKnown RBP eCLIP18.41■□□□□ 0.54
VPS53-216ENST00000574029 EPS8Q12929 822 aa18.41■□□□□ 0.54
VPS53-216ENST00000574029 OTUD3Q5T2D3 398 aaPredicted RBP18.41■□□□□ 0.54
VPS53-216ENST00000574029 TLCD1Q96CP7 247 aa18.41■□□□□ 0.54
VPS53-216ENST00000574029 TEX37Q96LM6 180 aa18.41■□□□□ 0.54
VPS53-216ENST00000574029 PIF1Q9H611 641 aa18.41■□□□□ 0.54
VPS53-216ENST00000574029 CCDC154A6NI56 674 aa18.4■□□□□ 0.54
VPS53-216ENST00000574029 LIPT2A6NK58 231 aa18.4■□□□□ 0.54
VPS53-216ENST00000574029 GPIP06744 558 aa18.4■□□□□ 0.54
VPS53-216ENST00000574029 UQCRBP14927 111 aa18.4■□□□□ 0.54
VPS53-216ENST00000574029 IL7RP16871 459 aa18.4■□□□□ 0.54
VPS53-216ENST00000574029 THBS2P35442 1172 aa18.4■□□□□ 0.54
VPS53-216ENST00000574029 SLC1A6P48664 564 aa18.4■□□□□ 0.54
VPS53-216ENST00000574029 ANXA11P50995 505 aaKnown RBP18.4■□□□□ 0.54
VPS53-216ENST00000574029 GNA13Q14344 377 aa18.4■□□□□ 0.54
VPS53-216ENST00000574029 GSTA3Q16772 222 aa18.4■□□□□ 0.54
VPS53-216ENST00000574029 MRPL2Q5T653 305 aaKnown RBP18.4■□□□□ 0.54
VPS53-216ENST00000574029 OGFOD2Q6N063 350 aa18.4■□□□□ 0.54
VPS53-216ENST00000574029 AAED1Q7RTV5 226 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms