RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 SCARB2Q14108 478 aa17.94■□□□□ 0.46
CLK3-225ENST00000569063 SLC17A1Q14916 467 aa17.94■□□□□ 0.46
CLK3-225ENST00000569063 TAB1Q15750 504 aa17.94■□□□□ 0.46
CLK3-225ENST00000569063 DHRS4L2Q6PKH6 230 aa17.94■□□□□ 0.46
CLK3-225ENST00000569063 C20orf204Q6ZNR8 217 aa17.94■□□□□ 0.46
CLK3-225ENST00000569063 ZC3HAV1Q7Z2W4 902 aaKnown RBP17.94■□□□□ 0.46
CLK3-225ENST00000569063 ATG4DQ86TL0 474 aaPredicted RBP17.94■□□□□ 0.46
CLK3-225ENST00000569063 RETREG3Q86VR2 466 aa17.94■□□□□ 0.46
CLK3-225ENST00000569063 PIGTQ969N2 578 aa17.94■□□□□ 0.46
CLK3-225ENST00000569063 C3orf49Q96BT1 292 aa17.94■□□□□ 0.46
CLK3-225ENST00000569063 ANKRD27Q96NW4 1050 aa17.94■□□□□ 0.46
CLK3-225ENST00000569063 TMUB1Q9BVT8 246 aa17.94■□□□□ 0.46
CLK3-225ENST00000569063 UBTD1Q9HAC8 227 aa17.94■□□□□ 0.46
CLK3-225ENST00000569063 FREM1Q5H8C1 2179 aa17.94■□□□□ 0.46
CLK3-225ENST00000569063 PRRC2AP48634 2157 aaKnown RBP17.93■□□□□ 0.46
CLK3-225ENST00000569063 TMEM229AB2RXF0 380 aa17.93■□□□□ 0.46
CLK3-225ENST00000569063 FRS3O43559 492 aa17.93■□□□□ 0.46
CLK3-225ENST00000569063 NPIPB7O75200 414 aa17.93■□□□□ 0.46
CLK3-225ENST00000569063 MRPL33O75394 65 aaKnown RBP17.93■□□□□ 0.46
CLK3-225ENST00000569063 LYZL6O75951 148 aa17.93■□□□□ 0.46
CLK3-225ENST00000569063 ADAM8P78325 824 aa17.93■□□□□ 0.46
CLK3-225ENST00000569063 HOXC5Q00444 222 aa17.93■□□□□ 0.46
CLK3-225ENST00000569063 OR7A5Q15622 319 aa17.93■□□□□ 0.46
CLK3-225ENST00000569063 ZNF704Q6ZNC4 412 aaPredicted RBP17.93■□□□□ 0.46
CLK3-225ENST00000569063 DHDDSQ86SQ9 333 aa17.93■□□□□ 0.46
CLK3-225ENST00000569063 LSMEM1Q8N8F7 131 aa17.93■□□□□ 0.46
CLK3-225ENST00000569063 SF3B5Q9BWJ5 86 aaKnown RBP17.93■□□□□ 0.46
CLK3-225ENST00000569063 TMEM120AQ9BXJ8 343 aa17.93■□□□□ 0.46
CLK3-225ENST00000569063 NGBQ9NPG2 151 aa17.93■□□□□ 0.46
CLK3-225ENST00000569063 SLC9A8Q9Y2E8 581 aa17.93■□□□□ 0.46
CLK3-225ENST00000569063 FLVCR1Q9Y5Y0 555 aa17.93■□□□□ 0.46
CLK3-225ENST00000569063 PRORSD1PA6NEY8 169 aa17.92■□□□□ 0.46
CLK3-225ENST00000569063 CD99P14209 185 aa17.92■□□□□ 0.46
CLK3-225ENST00000569063 ADSLP30566 484 aaPredicted RBP17.92■□□□□ 0.46
CLK3-225ENST00000569063 HOXC12P31275 282 aa17.92■□□□□ 0.46
CLK3-225ENST00000569063 OTUD3Q5T2D3 398 aaPredicted RBP17.92■□□□□ 0.46
CLK3-225ENST00000569063 C1orf140Q5VVS0 124 aa17.92■□□□□ 0.46
CLK3-225ENST00000569063 C6orf89Q6UWU4 347 aa17.92■□□□□ 0.46
CLK3-225ENST00000569063 SEZ6L2Q6UXD5 910 aa17.92■□□□□ 0.46
CLK3-225ENST00000569063 SSX8Q7RTT4 187 aa17.92■□□□□ 0.46
CLK3-225ENST00000569063 COMTD1Q86VU5 262 aa17.92■□□□□ 0.46
CLK3-225ENST00000569063 P2RY8Q86VZ1 359 aa17.92■□□□□ 0.46
CLK3-225ENST00000569063 UBE2J2Q8N2K1 259 aa17.92■□□□□ 0.46
CLK3-225ENST00000569063 ZNF433Q8N7K0 673 aaPredicted RBP17.92■□□□□ 0.46
CLK3-225ENST00000569063 TMEM99Q8N816 258 aa17.92■□□□□ 0.46
CLK3-225ENST00000569063 HIPK4Q8NE63 616 aa17.92■□□□□ 0.46
CLK3-225ENST00000569063 BHLHE22Q8NFJ8 381 aaPredicted RBP17.92■□□□□ 0.46
CLK3-225ENST00000569063 STK35Q8TDR2 534 aa17.92■□□□□ 0.46
CLK3-225ENST00000569063 ZNF607Q96SK3 696 aa17.92■□□□□ 0.46
CLK3-225ENST00000569063 CGREF1Q99674 301 aa17.92■□□□□ 0.46
CLK3-225ENST00000569063 PIF1Q9H611 641 aa17.92■□□□□ 0.46
CLK3-225ENST00000569063 C12orf10Q9HB07 376 aa17.92■□□□□ 0.46
CLK3-225ENST00000569063 PARPBPQ9NWS1 579 aa17.92■□□□□ 0.46
CLK3-225ENST00000569063 MALT1Q9UDY8 824 aa17.92■□□□□ 0.46
CLK3-225ENST00000569063 AQP7P3A6NL99 342 aa17.91■□□□□ 0.46
CLK3-225ENST00000569063 TPST1O60507 370 aa17.91■□□□□ 0.46
CLK3-225ENST00000569063 SERPINB7O75635 380 aa17.91■□□□□ 0.46
CLK3-225ENST00000569063 AKR7A3O95154 331 aa17.91■□□□□ 0.46
CLK3-225ENST00000569063 PLAUP00749 431 aa17.91■□□□□ 0.46
CLK3-225ENST00000569063 IGHV3-9P01782 118 aa17.91■□□□□ 0.46
CLK3-225ENST00000569063 TROVE2P10155 538 aaKnown RBP eCLIP17.91■□□□□ 0.46
CLK3-225ENST00000569063 GGT1P19440 569 aa17.91■□□□□ 0.46
CLK3-225ENST00000569063 TIMM23BQ5SRD1 257 aa17.91■□□□□ 0.46
CLK3-225ENST00000569063 NCMAPQ5T1S8 102 aa17.91■□□□□ 0.46
CLK3-225ENST00000569063 ALKBH2Q6NS38 261 aa17.91■□□□□ 0.46
CLK3-225ENST00000569063 PTOV1Q86YD1 416 aa17.91■□□□□ 0.46
CLK3-225ENST00000569063 TMEM45BQ96B21 275 aa17.91■□□□□ 0.46
CLK3-225ENST00000569063 CCL19Q99731 98 aa17.91■□□□□ 0.46
CLK3-225ENST00000569063 TAPBPLQ9BX59 468 aa17.91■□□□□ 0.46
CLK3-225ENST00000569063 ESRP2Q9H6T0 727 aaKnown RBP17.91■□□□□ 0.46
CLK3-225ENST00000569063 MRGBPQ9NV56 204 aa17.91■□□□□ 0.46
CLK3-225ENST00000569063 FGFR1OP2Q9NVK5 253 aa17.91■□□□□ 0.46
CLK3-225ENST00000569063 ASB6Q9NWX5 421 aa17.91■□□□□ 0.46
CLK3-225ENST00000569063 RAI1Q7Z5J4 1906 aaPredicted RBP17.91■□□□□ 0.46
CLK3-225ENST00000569063 HTR2AP28223 471 aa17.9■□□□□ 0.46
CLK3-225ENST00000569063 P2RY4P51582 365 aa17.9■□□□□ 0.46
CLK3-225ENST00000569063 RBBP4Q09028 425 aa17.9■□□□□ 0.46
CLK3-225ENST00000569063 NFYCQ13952 458 aa17.9■□□□□ 0.46
CLK3-225ENST00000569063 CAPRIN1Q14444 709 aaKnown RBP17.9■□□□□ 0.46
CLK3-225ENST00000569063 GLIPR1L2Q4G1C9 344 aa17.9■□□□□ 0.46
CLK3-225ENST00000569063 ADAM5Q6NVV9 412 aa17.9■□□□□ 0.46
CLK3-225ENST00000569063 LRRC75A-AS1Q8N1F1 130 aa17.9■□□□□ 0.46
CLK3-225ENST00000569063 ZIC4Q8N9L1 334 aa17.9■□□□□ 0.46
CLK3-225ENST00000569063 C11orf65Q8NCR3 313 aa17.9■□□□□ 0.46
CLK3-225ENST00000569063 IGFBPL1Q8WX77 278 aa17.9■□□□□ 0.46
CLK3-225ENST00000569063 MUCL1Q96DR8 90 aa17.9■□□□□ 0.46
CLK3-225ENST00000569063 EVA1AQ9H8M9 152 aa17.9■□□□□ 0.46
CLK3-225ENST00000569063 TAS2R16Q9NYV7 291 aa17.9■□□□□ 0.46
CLK3-225ENST00000569063 RPS6KB2Q9UBS0 482 aa17.9■□□□□ 0.46
CLK3-225ENST00000569063 ANGPT4Q9Y264 503 aa17.9■□□□□ 0.46
CLK3-225ENST00000569063 MED13LQ71F56 2210 aa17.89■□□□□ 0.45
CLK3-225ENST00000569063 OR5H1A6NKK0 313 aa17.89■□□□□ 0.45
CLK3-225ENST00000569063 ELOA3DA6NLF2 546 aaPredicted RBP17.89■□□□□ 0.45
CLK3-225ENST00000569063 FTCDNL1E5RQL4 147 aa17.89■□□□□ 0.45
CLK3-225ENST00000569063 PDLIM1O00151 329 aa17.89■□□□□ 0.45
CLK3-225ENST00000569063 HS3ST1O14792 307 aa17.89■□□□□ 0.45
CLK3-225ENST00000569063 SMPD2O60906 423 aa17.89■□□□□ 0.45
CLK3-225ENST00000569063 MFN2O95140 757 aa17.89■□□□□ 0.45
CLK3-225ENST00000569063 AQP1P29972 269 aa17.89■□□□□ 0.45
CLK3-225ENST00000569063 PCBP3P57721 371 aaKnown RBP17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms