RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 ADAMTS20P59510 1910 aa18.52■□□□□ 0.56
CLN3-230ENST00000568076 ARID1BQ8NFD5 2236 aaPredicted RBP18.52■□□□□ 0.55
CLN3-230ENST00000568076 FABP12A6NFH5 140 aa18.51■□□□□ 0.55
CLN3-230ENST00000568076 ARPC3O15145 178 aa18.51■□□□□ 0.55
CLN3-230ENST00000568076 PNMTP11086 282 aa18.51■□□□□ 0.55
CLN3-230ENST00000568076 FOXL2P58012 376 aa18.51■□□□□ 0.55
CLN3-230ENST00000568076 ERVK-25P63136 954 aa18.51■□□□□ 0.55
CLN3-230ENST00000568076 EGR4Q05215 589 aa18.51■□□□□ 0.55
CLN3-230ENST00000568076 KRR1Q13601 381 aaKnown RBP18.51■□□□□ 0.55
CLN3-230ENST00000568076 GPALPP1Q8IXQ4 340 aa18.51■□□□□ 0.55
CLN3-230ENST00000568076 OR5J2Q8NH18 312 aa18.51■□□□□ 0.55
CLN3-230ENST00000568076 CCDC74AQ96AQ1 378 aa18.51■□□□□ 0.55
CLN3-230ENST00000568076 RASD2Q96D21 266 aa18.51■□□□□ 0.55
CLN3-230ENST00000568076 MOGAT1Q96PD6 335 aa18.51■□□□□ 0.55
CLN3-230ENST00000568076 TTTY10Q9BZA0 68 aa18.51■□□□□ 0.55
CLN3-230ENST00000568076 ZNF768Q9H5H4 540 aaKnown RBP18.51■□□□□ 0.55
CLN3-230ENST00000568076 FER1L5A0AVI2 2057 aa18.51■□□□□ 0.55
CLN3-230ENST00000568076 OR6C68A6NDL8 312 aa18.51■□□□□ 0.55
CLN3-230ENST00000568076 ACTC1P68032 377 aa18.51■□□□□ 0.55
CLN3-230ENST00000568076 ACTA1P68133 377 aa18.51■□□□□ 0.55
CLN3-230ENST00000568076 GGTLC2Q14390 218 aa18.51■□□□□ 0.55
CLN3-230ENST00000568076 ZNF74Q16587 644 aa18.51■□□□□ 0.55
CLN3-230ENST00000568076 XKRXQ6PP77 449 aa18.51■□□□□ 0.55
CLN3-230ENST00000568076 TSSK4Q6SA08 328 aa18.51■□□□□ 0.55
CLN3-230ENST00000568076 SPATC1Q76KD6 591 aa18.51■□□□□ 0.55
CLN3-230ENST00000568076 KMT5CQ86Y97 462 aa18.51■□□□□ 0.55
CLN3-230ENST00000568076 PGLYRP3Q96LB9 341 aa18.51■□□□□ 0.55
CLN3-230ENST00000568076 GPX7Q96SL4 187 aaPredicted RBP18.51■□□□□ 0.55
CLN3-230ENST00000568076 CDX2Q99626 313 aaPredicted RBP18.51■□□□□ 0.55
CLN3-230ENST00000568076 TMEM43Q9BTV4 400 aa18.51■□□□□ 0.55
CLN3-230ENST00000568076 MKL2Q9ULH7 1088 aa18.51■□□□□ 0.55
CLN3-230ENST00000568076 RP1P56715 2156 aa18.51■□□□□ 0.55
CLN3-230ENST00000568076 COL5A1P20908 1838 aaPredicted RBP18.51■□□□□ 0.55
CLN3-230ENST00000568076 C4orf47A7E2U8 309 aa18.5■□□□□ 0.55
CLN3-230ENST00000568076 MAGEB4O15481 346 aaPredicted RBP18.5■□□□□ 0.55
CLN3-230ENST00000568076 AQP2P41181 271 aa18.5■□□□□ 0.55
CLN3-230ENST00000568076 NR0B1P51843 470 aaKnown RBP18.5■□□□□ 0.55
CLN3-230ENST00000568076 ZNF117Q03924 483 aa18.5■□□□□ 0.55
CLN3-230ENST00000568076 LTBQ06643 244 aa18.5■□□□□ 0.55
CLN3-230ENST00000568076 SLC3A1Q07837 685 aa18.5■□□□□ 0.55
CLN3-230ENST00000568076 MADCAM1Q13477 382 aa18.5■□□□□ 0.55
CLN3-230ENST00000568076 FAM27D1Q5T7N8 215 aa18.5■□□□□ 0.55
CLN3-230ENST00000568076 CELF2-AS1Q8N7Q2 184 aa18.5■□□□□ 0.55
CLN3-230ENST00000568076 TMCO6Q96DC7 493 aa18.5■□□□□ 0.55
CLN3-230ENST00000568076 SACM1LQ9NTJ5 587 aa18.5■□□□□ 0.55
CLN3-230ENST00000568076 CTSFQ9UBX1 484 aa18.5■□□□□ 0.55
CLN3-230ENST00000568076 MRTO4Q9UKD2 239 aaKnown RBP18.5■□□□□ 0.55
CLN3-230ENST00000568076 SIT1Q9Y3P8 196 aa18.5■□□□□ 0.55
CLN3-230ENST00000568076 GRIP1Q9Y3R0 1128 aa18.5■□□□□ 0.55
CLN3-230ENST00000568076 CABIN1Q9Y6J0 2220 aa18.5■□□□□ 0.55
CLN3-230ENST00000568076 A0A1W2PQ09 198 aa18.5■□□□□ 0.55
CLN3-230ENST00000568076 HPGDSO60760 199 aa18.5■□□□□ 0.55
CLN3-230ENST00000568076 IGF2P01344 180 aa18.5■□□□□ 0.55
CLN3-230ENST00000568076 NAA10P41227 235 aaPredicted RBP18.5■□□□□ 0.55
CLN3-230ENST00000568076 PRPS1P60891 318 aa18.5■□□□□ 0.55
CLN3-230ENST00000568076 DCAF7P61962 342 aa18.5■□□□□ 0.55
CLN3-230ENST00000568076 PPP3R1P63098 170 aa18.5■□□□□ 0.55
CLN3-230ENST00000568076 ZNF800Q2TB10 664 aaPredicted RBP eCLIP18.5■□□□□ 0.55
CLN3-230ENST00000568076 LANCL3Q6ZV70 420 aa18.5■□□□□ 0.55
CLN3-230ENST00000568076 LRRC75AQ8NAA5 344 aa18.5■□□□□ 0.55
CLN3-230ENST00000568076 OR14A16Q8NHC5 309 aa18.5■□□□□ 0.55
CLN3-230ENST00000568076 SETD6Q8TBK2 473 aa18.5■□□□□ 0.55
CLN3-230ENST00000568076 LIPHQ8WWY8 451 aa18.5■□□□□ 0.55
CLN3-230ENST00000568076 HPS1Q92902 700 aa18.5■□□□□ 0.55
CLN3-230ENST00000568076 CNN2Q99439 309 aaKnown RBP18.5■□□□□ 0.55
CLN3-230ENST00000568076 NMNAT2Q9BZQ4 307 aa18.5■□□□□ 0.55
CLN3-230ENST00000568076 WWTR1Q9GZV5 400 aa18.5■□□□□ 0.55
CLN3-230ENST00000568076 LAT2Q9GZY6 243 aa18.5■□□□□ 0.55
CLN3-230ENST00000568076 KCNN2Q9H2S1 579 aa18.5■□□□□ 0.55
CLN3-230ENST00000568076 SLC22A11Q9NSA0 550 aa18.5■□□□□ 0.55
CLN3-230ENST00000568076 ATXN7L1Q9ULK2 861 aaPredicted RBP18.5■□□□□ 0.55
CLN3-230ENST00000568076 HIF3AQ9Y2N7 669 aa18.5■□□□□ 0.55
CLN3-230ENST00000568076 NOX1Q9Y5S8 564 aa18.5■□□□□ 0.55
CLN3-230ENST00000568076 BLOC1S5-TXNDC5H3BN57 136 aa18.49■□□□□ 0.55
CLN3-230ENST00000568076 TSPAN2O60636 221 aa18.49■□□□□ 0.55
CLN3-230ENST00000568076 APOA1P02647 267 aa18.49■□□□□ 0.55
CLN3-230ENST00000568076 CSF3P09919 207 aa18.49■□□□□ 0.55
CLN3-230ENST00000568076 CD53P19397 219 aa18.49■□□□□ 0.55
CLN3-230ENST00000568076 PYCR1P32322 319 aa18.49■□□□□ 0.55
CLN3-230ENST00000568076 GRK6P43250 576 aa18.49■□□□□ 0.55
CLN3-230ENST00000568076 RFX2P48378 723 aa18.49■□□□□ 0.55
CLN3-230ENST00000568076 MTNR1BP49286 362 aa18.49■□□□□ 0.55
CLN3-230ENST00000568076 TAS2R43P59537 309 aa18.49■□□□□ 0.55
CLN3-230ENST00000568076 CARTPTQ16568 116 aa18.49■□□□□ 0.55
CLN3-230ENST00000568076 ISXQ2M1V0 245 aa18.49■□□□□ 0.55
CLN3-230ENST00000568076 DMKNQ6E0U4 476 aaPredicted RBP18.49■□□□□ 0.55
CLN3-230ENST00000568076 ZNF574Q6ZN55 896 aaPredicted RBP18.49■□□□□ 0.55
CLN3-230ENST00000568076 COX15Q7KZN9 410 aa18.49■□□□□ 0.55
CLN3-230ENST00000568076 Q7L0L9 218 aa18.49■□□□□ 0.55
CLN3-230ENST00000568076 NRARPQ7Z6K4 114 aa18.49■□□□□ 0.55
CLN3-230ENST00000568076 DAZLQ92904 295 aaKnown RBP18.49■□□□□ 0.55
CLN3-230ENST00000568076 SOSTQ9BQB4 213 aa18.49■□□□□ 0.55
CLN3-230ENST00000568076 CCDC86Q9H6F5 360 aaKnown RBP18.49■□□□□ 0.55
CLN3-230ENST00000568076 MMP25Q9NPA2 562 aa18.49■□□□□ 0.55
CLN3-230ENST00000568076 ST6GALNAC2Q9UJ37 374 aa18.49■□□□□ 0.55
CLN3-230ENST00000568076 TO15178 435 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 GMFGO60234 142 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 SC5DO75845 299 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 SPI1P17947 270 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 SHC1P29353 583 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms