RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 YAP1P46937 504 aaKnown RBP17.45■□□□□ 0.38
CLN3-225ENST00000566824 MS4A2Q01362 244 aa17.45■□□□□ 0.38
CLN3-225ENST00000566824 TFF3Q07654 80 aa17.45■□□□□ 0.38
CLN3-225ENST00000566824 FOXD4Q12950 439 aaPredicted RBP17.45■□□□□ 0.38
CLN3-225ENST00000566824 PIN1Q13526 163 aaPredicted RBP17.45■□□□□ 0.38
CLN3-225ENST00000566824 C1orf140Q5VVS0 124 aa17.45■□□□□ 0.38
CLN3-225ENST00000566824 ZNF613Q6PF04 617 aa17.45■□□□□ 0.38
CLN3-225ENST00000566824 LINC00114Q6XXX2 140 aa17.45■□□□□ 0.38
CLN3-225ENST00000566824 FCRLAQ7L513 359 aa17.45■□□□□ 0.38
CLN3-225ENST00000566824 GDF7Q7Z4P5 450 aa17.45■□□□□ 0.38
CLN3-225ENST00000566824 BTLAQ7Z6A9 289 aa17.45■□□□□ 0.38
CLN3-225ENST00000566824 CCDC103Q8IW40 242 aa17.45■□□□□ 0.38
CLN3-225ENST00000566824 DNAJA4Q8WW22 397 aaPredicted RBP17.45■□□□□ 0.38
CLN3-225ENST00000566824 STARD4Q96DR4 205 aa17.45■□□□□ 0.38
CLN3-225ENST00000566824 SLC47A1Q96FL8 570 aa17.45■□□□□ 0.38
CLN3-225ENST00000566824 PRSS27Q9BQR3 290 aa17.45■□□□□ 0.38
CLN3-225ENST00000566824 C1orf21Q9H246 121 aa17.45■□□□□ 0.38
CLN3-225ENST00000566824 GORASP2Q9H8Y8 452 aa17.45■□□□□ 0.38
CLN3-225ENST00000566824 C12orf10Q9HB07 376 aa17.45■□□□□ 0.38
CLN3-225ENST00000566824 TIGARQ9NQ88 270 aa17.45■□□□□ 0.38
CLN3-225ENST00000566824 SLC7A7Q9UM01 511 aa17.45■□□□□ 0.38
CLN3-225ENST00000566824 V9GYQ6 96 aa17.45■□□□□ 0.38
CLN3-225ENST00000566824 FLNBO75369 2602 aaKnown RBP17.44■□□□□ 0.38
CLN3-225ENST00000566824 ASH1LQ9NR48 2969 aaKnown RBP17.44■□□□□ 0.38
CLN3-225ENST00000566824 TRAPPC13A5PLN9 417 aa17.44■□□□□ 0.38
CLN3-225ENST00000566824 J3KTA2 159 aa17.44■□□□□ 0.38
CLN3-225ENST00000566824 PRKD3O94806 890 aa17.44■□□□□ 0.38
CLN3-225ENST00000566824 FPR1P21462 350 aa17.44■□□□□ 0.38
CLN3-225ENST00000566824 IDUAP35475 653 aa17.44■□□□□ 0.38
CLN3-225ENST00000566824 RPS5P46782 204 aaKnown RBP17.44■□□□□ 0.38
CLN3-225ENST00000566824 OR7A5Q15622 319 aa17.44■□□□□ 0.38
CLN3-225ENST00000566824 CNEP1R1Q8N9A8 125 aa17.44■□□□□ 0.38
CLN3-225ENST00000566824 STK35Q8TDR2 534 aa17.44■□□□□ 0.38
CLN3-225ENST00000566824 TAAR8Q969N4 342 aa17.44■□□□□ 0.38
CLN3-225ENST00000566824 ZNF775Q96BV0 537 aaPredicted RBP17.44■□□□□ 0.38
CLN3-225ENST00000566824 SLC41A3Q96GZ6 507 aa17.44■□□□□ 0.38
CLN3-225ENST00000566824 THTPAQ9BU02 230 aa17.44■□□□□ 0.38
CLN3-225ENST00000566824 KLHL13Q9P2N7 655 aa17.44■□□□□ 0.38
CLN3-225ENST00000566824 SEC14L4Q9UDX3 406 aa17.44■□□□□ 0.38
CLN3-225ENST00000566824 ZNF629Q9UEG4 869 aaPredicted RBP17.44■□□□□ 0.38
CLN3-225ENST00000566824 MAGEL2Q9UJ55 1249 aa17.44■□□□□ 0.38
CLN3-225ENST00000566824 A4GNTQ9UNA3 340 aa17.44■□□□□ 0.38
CLN3-225ENST00000566824 TRAPPC4Q9Y296 219 aa17.44■□□□□ 0.38
CLN3-225ENST00000566824 FTCDNL1E5RQL4 147 aa17.43■□□□□ 0.38
CLN3-225ENST00000566824 FFAR1O14842 300 aa17.43■□□□□ 0.38
CLN3-225ENST00000566824 PNMTP11086 282 aa17.43■□□□□ 0.38
CLN3-225ENST00000566824 FCGR2AP12318 317 aa17.43■□□□□ 0.38
CLN3-225ENST00000566824 FKBP2P26885 142 aaKnown RBP17.43■□□□□ 0.38
CLN3-225ENST00000566824 MAP2K6P52564 334 aa17.43■□□□□ 0.38
CLN3-225ENST00000566824 CSNK2A1P68400 391 aaPredicted RBP17.43■□□□□ 0.38
CLN3-225ENST00000566824 LTBQ06643 244 aa17.43■□□□□ 0.38
CLN3-225ENST00000566824 IFI44LQ53G44 452 aa17.43■□□□□ 0.38
CLN3-225ENST00000566824 OR2A2Q6IF42 318 aa17.43■□□□□ 0.38
CLN3-225ENST00000566824 CYP2R1Q6VVX0 501 aa17.43■□□□□ 0.38
CLN3-225ENST00000566824 MAMDC2Q7Z304 686 aaPredicted RBP17.43■□□□□ 0.38
CLN3-225ENST00000566824 NKAIN4Q8IVV8 208 aa17.43■□□□□ 0.38
CLN3-225ENST00000566824 TMEM99Q8N816 258 aa17.43■□□□□ 0.38
CLN3-225ENST00000566824 LZICQ8WZA0 190 aa17.43■□□□□ 0.38
CLN3-225ENST00000566824 ZFP3Q96NJ6 502 aa17.43■□□□□ 0.38
CLN3-225ENST00000566824 ZNF300Q96RE9 604 aaPredicted RBP17.43■□□□□ 0.38
CLN3-225ENST00000566824 SFXN3Q9BWM7 321 aa17.43■□□□□ 0.38
CLN3-225ENST00000566824 NPDC1Q9NQX5 325 aaPredicted RBP17.43■□□□□ 0.38
CLN3-225ENST00000566824 RHCGQ9UBD6 479 aa17.43■□□□□ 0.38
CLN3-225ENST00000566824 PLEKHB1Q9UF11 243 aaPredicted RBP17.43■□□□□ 0.38
CLN3-225ENST00000566824 RIMS3Q9UJD0 308 aa17.43■□□□□ 0.38
CLN3-225ENST00000566824 CENPEQ02224 2701 aa17.42■□□□□ 0.38
CLN3-225ENST00000566824 PRSS44E7EML9 344 aa17.42■□□□□ 0.38
CLN3-225ENST00000566824 LRRN3E7EW58 273 aa17.42■□□□□ 0.38
CLN3-225ENST00000566824 CHP2O43745 196 aa17.42■□□□□ 0.38
CLN3-225ENST00000566824 CYTIPO60759 359 aa17.42■□□□□ 0.38
CLN3-225ENST00000566824 SS18L1O75177 396 aaPredicted RBP17.42■□□□□ 0.38
CLN3-225ENST00000566824 AKR7A3O95154 331 aa17.42■□□□□ 0.38
CLN3-225ENST00000566824 IL18BPO95998 194 aa17.42■□□□□ 0.38
CLN3-225ENST00000566824 CGAP01215 116 aa17.42■□□□□ 0.38
CLN3-225ENST00000566824 CBLP22681 906 aa17.42■□□□□ 0.38
CLN3-225ENST00000566824 H3F3AP84243 136 aa17.42■□□□□ 0.38
CLN3-225ENST00000566824 SPATS1Q496A3 300 aa17.42■□□□□ 0.38
CLN3-225ENST00000566824 ABLIM2Q6H8Q1 611 aa17.42■□□□□ 0.38
CLN3-225ENST00000566824 FKBP9P1Q75LS8 142 aa17.42■□□□□ 0.38
CLN3-225ENST00000566824 NUFIP2Q7Z417 695 aaKnown RBP17.42■□□□□ 0.38
CLN3-225ENST00000566824 TUSC5Q8IXB3 177 aa17.42■□□□□ 0.38
CLN3-225ENST00000566824 GEMIN6Q8WXD5 167 aaKnown RBP17.42■□□□□ 0.38
CLN3-225ENST00000566824 SLC25A36Q96CQ1 311 aa17.42■□□□□ 0.38
CLN3-225ENST00000566824 GMPPAQ96IJ6 420 aaPredicted RBP17.42■□□□□ 0.38
CLN3-225ENST00000566824 C7orf34Q96L11 122 aa17.42■□□□□ 0.38
CLN3-225ENST00000566824 PSD2Q9BQI7 771 aa17.42■□□□□ 0.38
CLN3-225ENST00000566824 OPN3Q9H1Y3 402 aaPredicted RBP17.42■□□□□ 0.38
CLN3-225ENST00000566824 JKAMPQ9P055 326 aa17.42■□□□□ 0.38
CLN3-225ENST00000566824 RPS6KA6Q9UK32 745 aa17.42■□□□□ 0.38
CLN3-225ENST00000566824 PRPF19Q9UMS4 504 aaKnown RBP17.42■□□□□ 0.38
CLN3-225ENST00000566824 ZNF716A6NP11 495 aa17.41■□□□□ 0.38
CLN3-225ENST00000566824 DVL2O14641 736 aa17.41■□□□□ 0.38
CLN3-225ENST00000566824 GYG2O15488 501 aa17.41■□□□□ 0.38
CLN3-225ENST00000566824 SEMG1P04279 462 aa17.41■□□□□ 0.38
CLN3-225ENST00000566824 CRHP06850 196 aa17.41■□□□□ 0.38
CLN3-225ENST00000566824 EDNRAP25101 427 aa17.41■□□□□ 0.38
CLN3-225ENST00000566824 AGTR1P30556 359 aa17.41■□□□□ 0.38
CLN3-225ENST00000566824 OPRM1P35372 400 aa17.41■□□□□ 0.38
CLN3-225ENST00000566824 P2RY4P51582 365 aa17.41■□□□□ 0.38
CLN3-225ENST00000566824 TAS2R41P59536 307 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms