RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 MUS81Q96NY9 551 aa13.11□□□□□ -0.31
CLN3-213ENST00000565047 AMBRA1Q9C0C7 1298 aa13.11□□□□□ -0.31
CLN3-213ENST00000565047 IKZF5Q9H5V7 419 aa13.11□□□□□ -0.31
CLN3-213ENST00000565047 ZNF385DQ9H6B1 395 aa13.11□□□□□ -0.31
CLN3-213ENST00000565047 VIPAS39Q9H9C1 493 aa13.11□□□□□ -0.31
CLN3-213ENST00000565047 CCDC167Q9P0B6 97 aa13.11□□□□□ -0.31
CLN3-213ENST00000565047 EMC3Q9P0I2 261 aa13.11□□□□□ -0.31
CLN3-213ENST00000565047 VAPAQ9P0L0 249 aa13.11□□□□□ -0.31
CLN3-213ENST00000565047 NOSIPQ9Y314 301 aaKnown RBP13.11□□□□□ -0.31
CLN3-213ENST00000565047 FLVCR1Q9Y5Y0 555 aa13.11□□□□□ -0.31
CLN3-213ENST00000565047 ARID1AO14497 2285 aa13.1□□□□□ -0.31
CLN3-213ENST00000565047 OR5H1A6NKK0 313 aa13.1□□□□□ -0.31
CLN3-213ENST00000565047 TMEM229AB2RXF0 380 aa13.1□□□□□ -0.31
CLN3-213ENST00000565047 ARHGEF9O43307 516 aa13.1□□□□□ -0.31
CLN3-213ENST00000565047 TMCC2O75069 709 aa13.1□□□□□ -0.31
CLN3-213ENST00000565047 FZD7O75084 574 aa13.1□□□□□ -0.31
CLN3-213ENST00000565047 IGHV3-9P01782 118 aa13.1□□□□□ -0.31
CLN3-213ENST00000565047 ADSLP30566 484 aaPredicted RBP13.1□□□□□ -0.31
CLN3-213ENST00000565047 BSPH1Q075Z2 132 aa13.1□□□□□ -0.31
CLN3-213ENST00000565047 ADRM1Q16186 407 aa13.1□□□□□ -0.31
CLN3-213ENST00000565047 KRTAP21-3Q3LHN1 58 aa13.1□□□□□ -0.31
CLN3-213ENST00000565047 ZNF672Q499Z4 452 aaPredicted RBP13.1□□□□□ -0.31
CLN3-213ENST00000565047 WBP2NLQ6ICG8 309 aa13.1□□□□□ -0.31
CLN3-213ENST00000565047 DLEU7Q6UYE1 221 aa13.1□□□□□ -0.31
CLN3-213ENST00000565047 SERPINA11Q86U17 422 aa13.1□□□□□ -0.31
CLN3-213ENST00000565047 ZNF100Q8IYN0 542 aa13.1□□□□□ -0.31
CLN3-213ENST00000565047 TMEM99Q8N816 258 aa13.1□□□□□ -0.31
CLN3-213ENST00000565047 NEUROG1Q92886 237 aa13.1□□□□□ -0.31
CLN3-213ENST00000565047 SPDL1Q96EA4 605 aa13.1□□□□□ -0.31
CLN3-213ENST00000565047 COX4I2Q96KJ9 171 aa13.1□□□□□ -0.31
CLN3-213ENST00000565047 TRIM2Q9C040 744 aa13.1□□□□□ -0.31
CLN3-213ENST00000565047 IFT52Q9Y366 437 aa13.1□□□□□ -0.31
CLN3-213ENST00000565047 RNF115Q9Y4L5 304 aa13.1□□□□□ -0.31
CLN3-213ENST00000565047 SHISA9B4DS77 424 aa13.09□□□□□ -0.31
CLN3-213ENST00000565047 SASH3O75995 380 aa13.09□□□□□ -0.31
CLN3-213ENST00000565047 SOD3P08294 240 aa13.09□□□□□ -0.31
CLN3-213ENST00000565047 ITGA5P08648 1049 aa13.09□□□□□ -0.31
CLN3-213ENST00000565047 INHBBP09529 407 aa13.09□□□□□ -0.31
CLN3-213ENST00000565047 ARAFP10398 606 aa13.09□□□□□ -0.31
CLN3-213ENST00000565047 UQCRBP14927 111 aa13.09□□□□□ -0.31
CLN3-213ENST00000565047 ETS2P15036 469 aa13.09□□□□□ -0.31
CLN3-213ENST00000565047 GPX2P18283 190 aa13.09□□□□□ -0.31
CLN3-213ENST00000565047 GGT1P19440 569 aa13.09□□□□□ -0.31
CLN3-213ENST00000565047 IRX1P78414 480 aaPredicted RBP13.09□□□□□ -0.31
CLN3-213ENST00000565047 EGR4Q05215 589 aa13.09□□□□□ -0.31
CLN3-213ENST00000565047 BNIP2Q12982 314 aa13.09□□□□□ -0.31
CLN3-213ENST00000565047 CEACAM7Q14002 265 aa13.09□□□□□ -0.31
CLN3-213ENST00000565047 LARS2Q15031 903 aaKnown RBP13.09□□□□□ -0.31
CLN3-213ENST00000565047 GABRA6Q16445 453 aa13.09□□□□□ -0.31
CLN3-213ENST00000565047 PGGHGQ32M88 737 aa13.09□□□□□ -0.31
CLN3-213ENST00000565047 YTHDF3Q7Z739 585 aaKnown RBP13.09□□□□□ -0.31
CLN3-213ENST00000565047 BIVMQ86UB2 503 aa13.09□□□□□ -0.31
CLN3-213ENST00000565047 P3H2Q8IVL5 708 aa13.09□□□□□ -0.31
CLN3-213ENST00000565047 GOLGA6L1Q8N7Z2 621 aa13.09□□□□□ -0.31
CLN3-213ENST00000565047 OR52E4Q8NGH9 312 aa13.09□□□□□ -0.31
CLN3-213ENST00000565047 TMEM45BQ96B21 275 aa13.09□□□□□ -0.31
CLN3-213ENST00000565047 APH1AQ96BI3 265 aa13.09□□□□□ -0.31
CLN3-213ENST00000565047 PERPQ96FX8 193 aa13.09□□□□□ -0.31
CLN3-213ENST00000565047 BOD1Q96IK1 185 aa13.09□□□□□ -0.31
CLN3-213ENST00000565047 PTDSS2Q9BVG9 487 aa13.09□□□□□ -0.31
CLN3-213ENST00000565047 ESRP2Q9H6T0 727 aaKnown RBP13.09□□□□□ -0.31
CLN3-213ENST00000565047 ZNF232Q9UNY5 417 aa13.09□□□□□ -0.31
CLN3-213ENST00000565047 SLC25A15Q9Y619 301 aa13.09□□□□□ -0.31
CLN3-213ENST00000565047 CADP27708 2225 aa13.08□□□□□ -0.32
CLN3-213ENST00000565047 A0A1W2PP18 115 aa13.08□□□□□ -0.32
CLN3-213ENST00000565047 AQP7P3A6NL99 342 aa13.08□□□□□ -0.32
CLN3-213ENST00000565047 A8MVM7 634 aa13.08□□□□□ -0.32
CLN3-213ENST00000565047 HMGB1P1B2RPK0 211 aaPredicted RBP13.08□□□□□ -0.32
CLN3-213ENST00000565047 FTCDNL1E5RQL4 147 aa13.08□□□□□ -0.32
CLN3-213ENST00000565047 FRS3O43559 492 aa13.08□□□□□ -0.32
CLN3-213ENST00000565047 MRPL33O75394 65 aaKnown RBP13.08□□□□□ -0.32
CLN3-213ENST00000565047 AKR7A3O95154 331 aa13.08□□□□□ -0.32
CLN3-213ENST00000565047 CD3EP07766 207 aa13.08□□□□□ -0.32
CLN3-213ENST00000565047 IDUAP35475 653 aa13.08□□□□□ -0.32
CLN3-213ENST00000565047 STX1BP61266 288 aa13.08□□□□□ -0.32
CLN3-213ENST00000565047 HOXC5Q00444 222 aa13.08□□□□□ -0.32
CLN3-213ENST00000565047 FAPQ12884 760 aa13.08□□□□□ -0.32
CLN3-213ENST00000565047 PPA1Q15181 289 aa13.08□□□□□ -0.32
CLN3-213ENST00000565047 ZNF311Q5JNZ3 666 aa13.08□□□□□ -0.32
CLN3-213ENST00000565047 TSPO2Q5TGU0 170 aa13.08□□□□□ -0.32
CLN3-213ENST00000565047 ALKBH2Q6NS38 261 aa13.08□□□□□ -0.32
CLN3-213ENST00000565047 C6orf89Q6UWU4 347 aa13.08□□□□□ -0.32
CLN3-213ENST00000565047 SSX8Q7RTT4 187 aa13.08□□□□□ -0.32
CLN3-213ENST00000565047 HDXQ7Z353 690 aa13.08□□□□□ -0.32
CLN3-213ENST00000565047 WDR31Q8NA23 367 aa13.08□□□□□ -0.32
CLN3-213ENST00000565047 BBS10Q8TAM1 723 aa13.08□□□□□ -0.32
CLN3-213ENST00000565047 MAGEB18Q96M61 343 aa13.08□□□□□ -0.32
CLN3-213ENST00000565047 Q96MF0 132 aa13.08□□□□□ -0.32
CLN3-213ENST00000565047 ZNF385AQ96PM9 386 aaKnown RBP13.08□□□□□ -0.32
CLN3-213ENST00000565047 NAA11Q9BSU3 229 aaPredicted RBP13.08□□□□□ -0.32
CLN3-213ENST00000565047 SF3B5Q9BWJ5 86 aaKnown RBP13.08□□□□□ -0.32
CLN3-213ENST00000565047 RAD21L1Q9H4I0 556 aa13.08□□□□□ -0.32
CLN3-213ENST00000565047 PIF1Q9H611 641 aa13.08□□□□□ -0.32
CLN3-213ENST00000565047 NGBQ9NPG2 151 aa13.08□□□□□ -0.32
CLN3-213ENST00000565047 SLC7A10Q9NS82 523 aa13.08□□□□□ -0.32
CLN3-213ENST00000565047 INTS9Q9NV88 658 aaKnown RBP13.08□□□□□ -0.32
CLN3-213ENST00000565047 ASB6Q9NWX5 421 aa13.08□□□□□ -0.32
CLN3-213ENST00000565047 TAS2R16Q9NYV7 291 aa13.08□□□□□ -0.32
CLN3-213ENST00000565047 NR5A2O00482 541 aa13.07□□□□□ -0.32
CLN3-213ENST00000565047 TPST1O60507 370 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms