RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 EXD3Q8N9H8 876 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 SLC7A13Q8TCU3 470 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 ZC3H10Q96K80 434 aaKnown RBP8.47□□□□□ -1.05
VPS39-205ENST00000562258 AMBRA1Q9C0C7 1298 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 MAGIXQ9H6Y5 334 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 CHMP1AQ9HD42 196 aaPredicted RBP8.47□□□□□ -1.05
VPS39-205ENST00000562258 FOXJ2Q9P0K8 574 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 COMMD3Q9UBI1 195 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 EIF3KQ9UBQ5 218 aaKnown RBP8.47□□□□□ -1.05
VPS39-205ENST00000562258 PCDHGA6Q9Y5G7 932 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 GGT3PA6NGU5 568 aa8.46□□□□□ -1.05
VPS39-205ENST00000562258 AGAP5A6NIR3 686 aa8.46□□□□□ -1.05
VPS39-205ENST00000562258 GASTP01350 101 aa8.46□□□□□ -1.05
VPS39-205ENST00000562258 EMDP50402 254 aa8.46□□□□□ -1.05
VPS39-205ENST00000562258 TSTQ16762 297 aaKnown RBP8.46□□□□□ -1.05
VPS39-205ENST00000562258 ANKDD1AQ495B1 522 aa8.46□□□□□ -1.05
VPS39-205ENST00000562258 SLC16A14Q7RTX9 510 aa8.46□□□□□ -1.05
VPS39-205ENST00000562258 KLBQ86Z14 1044 aa8.46□□□□□ -1.05
VPS39-205ENST00000562258 SPRYD4Q8WW59 207 aaPredicted RBP8.46□□□□□ -1.05
VPS39-205ENST00000562258 RASL10BQ96S79 203 aa8.46□□□□□ -1.05
VPS39-205ENST00000562258 NMNAT3Q96T66 252 aa8.46□□□□□ -1.05
VPS39-205ENST00000562258 TRIM36Q9NQ86 728 aa8.46□□□□□ -1.05
VPS39-205ENST00000562258 FBXO8Q9NRD0 319 aa8.46□□□□□ -1.05
VPS39-205ENST00000562258 ASIC5Q9NY37 505 aa8.46□□□□□ -1.05
VPS39-205ENST00000562258 VSX1Q9NZR4 365 aaPredicted RBP8.46□□□□□ -1.05
VPS39-205ENST00000562258 A0A087WV62 115 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 IGHV3-64DA0A0J9YX35 117 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 C12orf71A8MTZ7 269 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 FXYD1O00168 92 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 PIP5K1CO60331 668 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 IGHG1P01857 330 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 FBXO45P0C2W1 286 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 BMP5P22003 454 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 PCYT1AP49585 367 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 ARHGAP11BQ3KRB8 267 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 ZNF813Q6ZN06 617 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 PLEKHG7Q6ZR37 379 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 ASRGL1Q7L266 308 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 P2RY8Q86VZ1 359 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 TIGD4Q8IY51 512 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 FAM181AQ8N9Y4 354 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 KBTBD8Q8NFY9 601 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 GATAD2BQ8WXI9 593 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 ZNF566Q969W8 418 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 FAM118AQ9NWS6 357 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 MED29Q9NX70 200 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 ZNF337Q9Y3M9 751 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 TRGV5A0A0B4J1U4 118 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 SLC22A31A6NKX4 558 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 RAB36O95755 333 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 ATP1B1P05026 303 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 ITGAMP11215 1152 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 PRKAR1BP31321 381 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 SLC1A3P43003 542 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 DAP3P51398 398 aaKnown RBP8.46□□□□□ -1.06
VPS39-205ENST00000562258 SLC35A1P78382 337 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 IDNKQ5T6J7 187 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 FAM69AQ5T7M9 428 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 LIPKQ5VXJ0 399 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 C3orf33Q6P1S2 294 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 PIAS4Q8N2W9 510 aaPredicted RBP8.46□□□□□ -1.06
VPS39-205ENST00000562258 ZNF511Q8NB15 262 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 PFN4Q8NHR9 129 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 SLC38A1Q9H2H9 487 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 DDX28Q9NUL7 540 aaKnown RBP8.46□□□□□ -1.06
VPS39-205ENST00000562258 PARPBPQ9NWS1 579 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 NDUFAF4Q9P032 175 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 CAB39Q9Y376 341 aaPredicted RBP8.46□□□□□ -1.06
VPS39-205ENST00000562258 TMEM184BQ9Y519 407 aaPredicted RBP8.46□□□□□ -1.06
VPS39-205ENST00000562258 PCDHGA1Q9Y5H4 931 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 CACNA1DQ01668 2161 aa8.46□□□□□ -1.06
VPS39-205ENST00000562258 EPG5Q9HCE0 2579 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 A0A096LPE4 126 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 A0A1W2PPZ6 126 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 B4E171 279 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 J3QRK9 145 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 CBR3O75828 277 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 MT-ND5P03915 603 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 LIPCP11150 499 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 PNLIPP16233 465 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 HOXA6P31267 233 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 TSPAN7P41732 249 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 RANBP1P43487 201 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 MEOX1P50221 254 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 FAPQ12884 760 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 FOXF1Q12946 379 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 ARFRP1Q13795 201 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 EBPQ15125 230 aaKnown RBP8.45□□□□□ -1.06
VPS39-205ENST00000562258 C3AR1Q16581 482 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 ZNF528Q3MIS6 628 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 LRIF1Q5T3J3 769 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 OR7E24Q6IFN5 339 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 ZNF574Q6ZN55 896 aaPredicted RBP8.45□□□□□ -1.06
VPS39-205ENST00000562258 ASCL5Q7RTU5 278 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 CCDC103Q8IW40 242 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 SLC38A9Q8NBW4 561 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 SNRNP27Q8WVK2 155 aaKnown RBP8.45□□□□□ -1.06
VPS39-205ENST00000562258 WDR34Q96EX3 536 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 RDH12Q96NR8 316 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 TMEM38AQ9H6F2 299 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms