RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 PLA2G12AQ9BZM1 189 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 UBE2ZQ9H832 354 aaPredicted RBP12.28□□□□□ -0.44
CLK3-206ENST00000562078 ISG20L2Q9H9L3 353 aaKnown RBP12.28□□□□□ -0.44
CLK3-206ENST00000562078 MRPS18AQ9NVS2 196 aaKnown RBP12.28□□□□□ -0.44
CLK3-206ENST00000562078 THAP10Q9P2Z0 257 aaPredicted RBP12.28□□□□□ -0.44
CLK3-206ENST00000562078 PCDHB10Q9UN67 800 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 PCDHGA5Q9Y5G8 931 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 A0A0G2JK05 382 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 RNF13O43567 381 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 NDUFB7P17568 137 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 RPL3P39023 403 aaKnown RBP12.28□□□□□ -0.44
CLK3-206ENST00000562078 CD96P40200 585 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 SEC13P55735 322 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 RPS13P62277 151 aaKnown RBP12.28□□□□□ -0.44
CLK3-206ENST00000562078 HBA1P69905 142 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 RAE1P78406 368 aaKnown RBP12.28□□□□□ -0.44
CLK3-206ENST00000562078 SRSF3P84103 164 aaKnown RBP12.28□□□□□ -0.44
CLK3-206ENST00000562078 LRRC74AQ0VAA2 488 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 RPS26P11Q5JNZ5 115 aaPredicted RBP12.28□□□□□ -0.44
CLK3-206ENST00000562078 PGAP1Q75T13 922 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 HORMAD2Q8N7B1 307 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 OR9A1PQ8NGU1 263 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 SLC7A13Q8TCU3 470 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 HAVCR2Q8TDQ0 301 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 THEM6Q8WUY1 208 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 TMEM41AQ96HV5 264 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 ZNF514Q96K75 400 aaPredicted RBP12.28□□□□□ -0.44
CLK3-206ENST00000562078 GPA33Q99795 319 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 SLC35A5Q9BS91 424 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 RSPO3Q9BXY4 272 aaPredicted RBP12.28□□□□□ -0.44
CLK3-206ENST00000562078 BRF2Q9HAW0 419 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 USP34Q70CQ2 3546 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 ARGFXA6NJG6 315 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 MBTPS2O43462 519 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 EIF4E2O60573 245 aaKnown RBP12.27□□□□□ -0.45
CLK3-206ENST00000562078 ZNF44P15621 663 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 NPPBP16860 134 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 HSD3B2P26439 372 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 DRD3P35462 400 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 MEF2AQ02078 507 aaPredicted RBP12.27□□□□□ -0.45
CLK3-206ENST00000562078 FZD5Q13467 585 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 SMAD4Q13485 552 aaKnown RBP12.27□□□□□ -0.45
CLK3-206ENST00000562078 SLBPQ14493 270 aaKnown RBP eCLIP12.27□□□□□ -0.45
CLK3-206ENST00000562078 RNF212Q495C1 297 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 TCTN3Q6NUS6 607 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 FAM180BQ6P0A1 224 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 MED27Q6P2C8 311 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 APOOLQ6UXV4 268 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 FAM122BQ7Z309 247 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 FAM98AQ8NCA5 519 aaKnown RBP12.27□□□□□ -0.45
CLK3-206ENST00000562078 OR2L2Q8NH16 312 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 LINC00615Q96LM1 132 aaPredicted RBP12.27□□□□□ -0.45
CLK3-206ENST00000562078 ZNF649Q9BS31 505 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 HDAC8Q9BY41 377 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 WDR13Q9H1Z4 485 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 PIGMQ9H3S5 423 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 C1GALT1Q9NS00 363 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 PLAGL1Q9UM63 463 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 DYRK1BQ9Y463 629 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 DMRT1Q9Y5R6 373 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 IGLON5A6NGN9 336 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 OR6C76A6NM76 312 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 DBX1A6NMT0 343 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 OR2T1O43869 369 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 PRMT3O60678 531 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 NME6O75414 186 aaPredicted RBP12.27□□□□□ -0.45
CLK3-206ENST00000562078 UBXN7O94888 489 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 ANXA4P09525 319 aaPredicted RBP12.27□□□□□ -0.45
CLK3-206ENST00000562078 SFTPCP11686 197 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 BDKRB2P30411 391 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 ACTR1BP42025 376 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 PITPNAQ00169 270 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 SORDQ00796 357 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 KIAA1161Q6NSJ0 714 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 SLC36A4Q6YBV0 504 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 SSX9Q7RTT3 188 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 DCUN1D3Q8IWE4 304 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 KLHL36Q8N4N3 616 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 IL17FQ96PD4 163 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 EGLN3Q9H6Z9 239 aa12.27□□□□□ -0.45
CLK3-206ENST00000562078 C8orf33Q9H7E9 229 aaPredicted RBP12.27□□□□□ -0.45
CLK3-206ENST00000562078 ZNF282Q9UDV7 671 aaPredicted RBP12.27□□□□□ -0.45
CLK3-206ENST00000562078 GNG14A0A1W2PPG7 69 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 MGAT4DA6NG13 374 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 COLCA2A8K830 154 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 FAAHO00519 579 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 RAD1O60671 282 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 TBXA2RP21731 343 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 PCBP3P57721 371 aaKnown RBP12.26□□□□□ -0.45
CLK3-206ENST00000562078 LINC00303Q3SY05 128 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 HEPHL1Q6MZM0 1159 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 TPRA1Q86W33 373 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 OR6V1Q8N148 313 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 C2orf73Q8N5S3 287 aaPredicted RBP12.26□□□□□ -0.45
CLK3-206ENST00000562078 OR5AR1Q8NGP9 310 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 GOT1L1Q8NHS2 421 aaPredicted RBP12.26□□□□□ -0.45
CLK3-206ENST00000562078 SMIM4Q8WVI0 70 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 RAB7BQ96AH8 199 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 TMEM68Q96MH6 324 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 ZNF75AQ96N20 296 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms