RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 EGLN3Q9H6Z9 239 aa10.17□□□□□ -0.78
USP3-218ENST00000560202 DEPPQ9NTK1 212 aa10.17□□□□□ -0.78
USP3-218ENST00000560202 DKK4Q9UBT3 224 aa10.17□□□□□ -0.78
USP3-218ENST00000560202 KCNMB2Q9Y691 235 aa10.17□□□□□ -0.78
USP3-218ENST00000560202 A0A087WZY1 265 aa10.16□□□□□ -0.78
USP3-218ENST00000560202 TMEM72A0PK05 275 aa10.16□□□□□ -0.78
USP3-218ENST00000560202 TRIM64A6NGJ6 449 aa10.16□□□□□ -0.78
USP3-218ENST00000560202 SUSD5O60279 629 aa10.16□□□□□ -0.78
USP3-218ENST00000560202 CBR3O75828 277 aa10.16□□□□□ -0.78
USP3-218ENST00000560202 CH25HO95992 272 aa10.16□□□□□ -0.78
USP3-218ENST00000560202 GGT2P36268 569 aa10.16□□□□□ -0.78
USP3-218ENST00000560202 DSCR4P56555 118 aaPredicted RBP10.16□□□□□ -0.78
USP3-218ENST00000560202 GPR85P60893 370 aa10.16□□□□□ -0.78
USP3-218ENST00000560202 ISL1P61371 349 aa10.16□□□□□ -0.78
USP3-218ENST00000560202 ZNF620Q6ZNG0 422 aa10.16□□□□□ -0.78
USP3-218ENST00000560202 DCDC5Q6ZRR9 648 aa10.16□□□□□ -0.78
USP3-218ENST00000560202 CCDC71Q8IV32 467 aaPredicted RBP10.16□□□□□ -0.78
USP3-218ENST00000560202 CLDN22Q8N7P3 220 aa10.16□□□□□ -0.78
USP3-218ENST00000560202 SETD9Q8NE22 299 aa10.16□□□□□ -0.78
USP3-218ENST00000560202 OR13C2Q8NGS9 318 aa10.16□□□□□ -0.78
USP3-218ENST00000560202 TEX47Q8TBZ9 253 aa10.16□□□□□ -0.78
USP3-218ENST00000560202 POC1BQ8TC44 478 aa10.16□□□□□ -0.78
USP3-218ENST00000560202 KTI12Q96EK9 354 aaPredicted RBP10.16□□□□□ -0.78
USP3-218ENST00000560202 PLA2G12AQ9BZM1 189 aa10.16□□□□□ -0.78
USP3-218ENST00000560202 CCDC86Q9H6F5 360 aaKnown RBP10.16□□□□□ -0.78
USP3-218ENST00000560202 INIPQ9NRY2 104 aa10.16□□□□□ -0.78
USP3-218ENST00000560202 IL20Q9NYY1 176 aa10.16□□□□□ -0.78
USP3-218ENST00000560202 CDH10Q9Y6N8 788 aa10.16□□□□□ -0.78
USP3-218ENST00000560202 HSPE1-MOB4S4R3N1 261 aa10.16□□□□□ -0.78
USP3-218ENST00000560202 HEATR5AQ86XA9 2040 aa10.16□□□□□ -0.78
USP3-218ENST00000560202 A8MVM7 634 aa10.15□□□□□ -0.78
USP3-218ENST00000560202 SHISA8B8ZZ34 492 aa10.15□□□□□ -0.78
USP3-218ENST00000560202 LRRN3E7EW58 273 aa10.15□□□□□ -0.78
USP3-218ENST00000560202 PTP4A3O75365 173 aa10.15□□□□□ -0.78
USP3-218ENST00000560202 OR7A10O76100 309 aa10.15□□□□□ -0.78
USP3-218ENST00000560202 DPP4P27487 766 aa10.15□□□□□ -0.78
USP3-218ENST00000560202 EIF1P41567 113 aaKnown RBP10.15□□□□□ -0.78
USP3-218ENST00000560202 GIPRP48546 466 aa10.15□□□□□ -0.78
USP3-218ENST00000560202 ENTPD1P49961 510 aa10.15□□□□□ -0.78
USP3-218ENST00000560202 ARG2P78540 354 aa10.15□□□□□ -0.78
USP3-218ENST00000560202 CDK5Q00535 292 aa10.15□□□□□ -0.78
USP3-218ENST00000560202 IL5RAQ01344 420 aa10.15□□□□□ -0.78
USP3-218ENST00000560202 ZNF74Q16587 644 aa10.15□□□□□ -0.78
USP3-218ENST00000560202 SLX4IPQ5VYV7 408 aa10.15□□□□□ -0.78
USP3-218ENST00000560202 TMEM53Q6P2H8 277 aa10.15□□□□□ -0.78
USP3-218ENST00000560202 CCDC81Q6ZN84 652 aa10.15□□□□□ -0.78
USP3-218ENST00000560202 SLC46A3Q7Z3Q1 461 aa10.15□□□□□ -0.78
USP3-218ENST00000560202 OAFQ86UD1 273 aa10.15□□□□□ -0.78
USP3-218ENST00000560202 SPACA3Q8IXA5 215 aa10.15□□□□□ -0.78
USP3-218ENST00000560202 C10orf53Q8N6V4 93 aa10.15□□□□□ -0.78
USP3-218ENST00000560202 MDS2Q8NDY4 140 aa10.15□□□□□ -0.78
USP3-218ENST00000560202 OR8D4Q8NGM9 314 aa10.15□□□□□ -0.78
USP3-218ENST00000560202 STK35Q8TDR2 534 aa10.15□□□□□ -0.78
USP3-218ENST00000560202 TRUB1Q8WWH5 349 aaKnown RBP10.15□□□□□ -0.78
USP3-218ENST00000560202 HAS2Q92819 552 aa10.15□□□□□ -0.78
USP3-218ENST00000560202 OSTF1Q92882 214 aa10.15□□□□□ -0.78
USP3-218ENST00000560202 ZBTB8AQ96BR9 441 aa10.15□□□□□ -0.78
USP3-218ENST00000560202 ISOC1Q96CN7 298 aa10.15□□□□□ -0.78
USP3-218ENST00000560202 FAM173AQ9BQD7 235 aa10.15□□□□□ -0.78
USP3-218ENST00000560202 CHRNA9Q9UGM1 479 aa10.15□□□□□ -0.78
USP3-218ENST00000560202 SIGLEC7Q9Y286 467 aa10.15□□□□□ -0.78
USP3-218ENST00000560202 TRAV36DV7A0A075B6V5 113 aa10.15□□□□□ -0.79
USP3-218ENST00000560202 TRAV27A0A087WT01 109 aa10.15□□□□□ -0.79
USP3-218ENST00000560202 ZC3H12DA2A288 527 aaKnown RBP10.15□□□□□ -0.79
USP3-218ENST00000560202 PINLYPA6NC86 204 aa10.15□□□□□ -0.79
USP3-218ENST00000560202 LRRC3CA6NJW4 275 aa10.15□□□□□ -0.79
USP3-218ENST00000560202 ZNF208O43345 1280 aa10.15□□□□□ -0.79
USP3-218ENST00000560202 EFNA2O43921 213 aa10.15□□□□□ -0.79
USP3-218ENST00000560202 HCN1O60741 890 aa10.15□□□□□ -0.79
USP3-218ENST00000560202 NOL3O60936 208 aaKnown RBP10.15□□□□□ -0.79
USP3-218ENST00000560202 NPIPB7O75200 414 aa10.15□□□□□ -0.79
USP3-218ENST00000560202 CEACAM4O75871 244 aa10.15□□□□□ -0.79
USP3-218ENST00000560202 RCBTB2O95199 551 aa10.15□□□□□ -0.79
USP3-218ENST00000560202 SP1P08047 785 aa10.15□□□□□ -0.79
USP3-218ENST00000560202 ADRB1P08588 477 aa10.15□□□□□ -0.79
USP3-218ENST00000560202 HK1P19367 917 aa10.15□□□□□ -0.79
USP3-218ENST00000560202 TCEA1P23193 301 aaKnown RBP10.15□□□□□ -0.79
USP3-218ENST00000560202 DCKP27707 260 aa10.15□□□□□ -0.79
USP3-218ENST00000560202 ADH6P28332 368 aa10.15□□□□□ -0.79
USP3-218ENST00000560202 EIF2S3P41091 472 aaKnown RBP10.15□□□□□ -0.79
USP3-218ENST00000560202 RPS5P46782 204 aaKnown RBP10.15□□□□□ -0.79
USP3-218ENST00000560202 SLC9A3P48764 834 aa10.15□□□□□ -0.79
USP3-218ENST00000560202 MAP2K6P52564 334 aa10.15□□□□□ -0.79
USP3-218ENST00000560202 CDC42P60953 191 aa10.15□□□□□ -0.79
USP3-218ENST00000560202 FOXK1P85037 733 aa10.15□□□□□ -0.79
USP3-218ENST00000560202 LTBQ06643 244 aa10.15□□□□□ -0.79
USP3-218ENST00000560202 CD47Q08722 323 aa10.15□□□□□ -0.79
USP3-218ENST00000560202 FOXO1Q12778 655 aa10.15□□□□□ -0.79
USP3-218ENST00000560202 GINS1Q14691 196 aa10.15□□□□□ -0.79
USP3-218ENST00000560202 INAQ16352 499 aa10.15□□□□□ -0.79
USP3-218ENST00000560202 BROXQ5VW32 411 aa10.15□□□□□ -0.79
USP3-218ENST00000560202 C1QL3Q5VWW1 255 aa10.15□□□□□ -0.79
USP3-218ENST00000560202 C12orf73Q69YU5 71 aa10.15□□□□□ -0.79
USP3-218ENST00000560202 SLC25A25Q6KCM7 469 aa10.15□□□□□ -0.79
USP3-218ENST00000560202 RPL13AP3Q6NVV1 102 aa10.15□□□□□ -0.79
USP3-218ENST00000560202 SMARCD3Q6STE5 483 aa10.15□□□□□ -0.79
USP3-218ENST00000560202 C5orf46Q6UWT4 87 aa10.15□□□□□ -0.79
USP3-218ENST00000560202 DEPDC4Q8N2C3 294 aa10.15□□□□□ -0.79
USP3-218ENST00000560202 IQCF1Q8N6M8 205 aa10.15□□□□□ -0.79
USP3-218ENST00000560202 LRRC17Q8N6Y2 441 aa10.15□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms