RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 TUBGCP2Q9BSJ2 902 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 SLC7A5P2Q9GIP4 190 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 NDEL1Q9GZM8 345 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 BOLA2Q9H3K6 86 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 MAGEF1Q9HAY2 307 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 CD209Q9NNX6 404 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 AGPAT5Q9NUQ2 364 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 NKIRAS1Q9NYS0 192 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 EPS15L1Q9UBC2 864 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 MTRF1LQ9UGC7 380 aaKnown RBP2.4□□□□□ -2.03
VPS13C-208ENST00000559119 RSL24D1Q9UHA3 163 aaKnown RBP2.4□□□□□ -2.03
VPS13C-208ENST00000559119 PCSK1NQ9UHG2 260 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 PCYOX1Q9UHG3 505 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 TRMT6Q9UJA5 497 aaKnown RBP2.4□□□□□ -2.03
VPS13C-208ENST00000559119 DIMT1Q9UNQ2 313 aaKnown RBP2.4□□□□□ -2.03
VPS13C-208ENST00000559119 RPH3AQ9Y2J0 694 aaPredicted RBP2.4□□□□□ -2.03
VPS13C-208ENST00000559119 IKBKGQ9Y6K9 419 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 CPS1P31327 1500 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 PPLO60437 1756 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 ZNF609O15014 1411 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 C10orf71Q711Q0 1435 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 PTPRUQ92729 1446 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 DLG5Q8TDM6 1919 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 ADGRA3Q8IWK6 1321 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 ZNF532Q9HCE3 1301 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 PIK3C2BO00750 1634 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 LRRC37A3O60309 1634 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 COL1A2P08123 1366 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 FAM208AQ9UK61 1670 aaKnown RBP2.39□□□□□ -2.03
VPS13C-208ENST00000559119 GOLGA8QA0A0J9YX86 632 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 GOLGA8OA6NCC3 632 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 TRIM64CA6NLI5 447 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 SYCE1LA8MT33 242 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 GOLGA8NF8WBI6 632 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 GOLGA8RI6L899 631 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 M0QX08 132 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 DDX39AO00148 427 aaKnown RBP2.39□□□□□ -2.03
VPS13C-208ENST00000559119 KPNA4O00629 521 aaPredicted RBP2.39□□□□□ -2.03
VPS13C-208ENST00000559119 SH2D1BO14796 132 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 XPO1O14980 1071 aaKnown RBP2.39□□□□□ -2.03
VPS13C-208ENST00000559119 ACOX3O15254 700 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 GYG2O15488 501 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 SLC7A4O43246 635 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 KLRC4O43908 158 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 SPAG7O75391 227 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 LYPLA1O75608 230 aaPredicted RBP2.39□□□□□ -2.03
VPS13C-208ENST00000559119 CIB2O75838 187 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 TM7SF2O76062 418 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 UFL1O94874 794 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 GLCEO94923 617 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 KLHL2O95198 593 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 KRT75O95678 551 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 IGKV1-17P01599 117 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 ABHD2P08910 425 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 B4GALT1P15291 398 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 FOXN2P32314 431 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 NUDT1P36639 197 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 EIF2B2P49770 351 aaKnown RBP2.39□□□□□ -2.03
VPS13C-208ENST00000559119 AP3M2P53677 418 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 C21orf59P57076 290 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 STX1BP61266 288 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 CDK16Q00536 496 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 PAX5Q02548 391 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 CAV1Q03135 178 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 RIPPLY1Q0D2K3 151 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 WASHC5Q12768 1159 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 OXA1LQ15070 435 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 CYTH1Q15438 398 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 KCNJ8Q15842 424 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 PDK4Q16654 411 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 GLRA4Q5JXX5 417 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 OGFRL1Q5TC84 451 aaPredicted RBP2.39□□□□□ -2.03
VPS13C-208ENST00000559119 CENPUQ71F23 418 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 MIER3Q7Z3K6 550 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 DHDDSQ86SQ9 333 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 LRRC6Q86X45 466 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 TUSC5Q8IXB3 177 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 CLYBLQ8N0X4 340 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 CENPSQ8N2Z9 138 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 OR52J3Q8NH60 311 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 ZNF420Q8TAQ5 688 aaPredicted RBP2.39□□□□□ -2.03
VPS13C-208ENST00000559119 SUN5Q8TC36 379 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 MGARPQ8TDB4 240 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 UBTD2Q8WUN7 234 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 DCUN1D4Q92564 292 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 PEX13Q92968 403 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 ART4Q93070 314 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 MR1Q95460 341 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 MCUR1Q96AQ8 359 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 PLEKHA8Q96JA3 519 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 DNAJC1Q96KC8 554 aaKnown RBP2.39□□□□□ -2.03
VPS13C-208ENST00000559119 DOK1Q99704 481 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 DHRS9Q9BPW9 319 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 CCDC77Q9BR77 488 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 MROQ9BYG7 248 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 OSBPL8Q9BZF1 889 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 ACPTQ9BZG2 426 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 NT5C3AQ9H0P0 336 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 PSTPIP2Q9H939 334 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 DIABLOQ9NR28 239 aa2.39□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms