RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 WNT1P04628 370 aa11.83□□□□□ -0.52
LDLR-207ENST00000558013 POU3F3P20264 500 aaPredicted RBP11.83□□□□□ -0.52
LDLR-207ENST00000558013 TNFRSF4P43489 277 aa11.83□□□□□ -0.52
LDLR-207ENST00000558013 TMEM255AQ5JRV8 349 aa11.83□□□□□ -0.52
LDLR-207ENST00000558013 LIX1LQ8IVB5 337 aa11.83□□□□□ -0.52
LDLR-207ENST00000558013 C9orf62Q8N4C0 152 aa11.83□□□□□ -0.52
LDLR-207ENST00000558013 TOMM5Q8N4H5 51 aa11.83□□□□□ -0.52
LDLR-207ENST00000558013 OR6C4Q8NGE1 309 aa11.83□□□□□ -0.52
LDLR-207ENST00000558013 SNX33Q8WV41 574 aa11.83□□□□□ -0.52
LDLR-207ENST00000558013 DACT3Q96B18 629 aaPredicted RBP11.83□□□□□ -0.52
LDLR-207ENST00000558013 GON7Q9BXV9 100 aa11.83□□□□□ -0.52
LDLR-207ENST00000558013 NIPAL2Q9H841 368 aa11.83□□□□□ -0.52
LDLR-207ENST00000558013 FOLH1BQ9HBA9 442 aa11.83□□□□□ -0.52
LDLR-207ENST00000558013 ANKRD10Q9NXR5 420 aa11.83□□□□□ -0.52
LDLR-207ENST00000558013 PIN1P1O15428 100 aa11.82□□□□□ -0.52
LDLR-207ENST00000558013 MAOAP21397 527 aa11.82□□□□□ -0.52
LDLR-207ENST00000558013 ZNF10P21506 573 aaPredicted RBP11.82□□□□□ -0.52
LDLR-207ENST00000558013 HNRNPA2B1P22626 353 aaKnown RBP11.82□□□□□ -0.52
LDLR-207ENST00000558013 CTHP32929 405 aa11.82□□□□□ -0.52
LDLR-207ENST00000558013 RPS27P42677 84 aaKnown RBP11.82□□□□□ -0.52
LDLR-207ENST00000558013 SIRPAP78324 504 aa11.82□□□□□ -0.52
LDLR-207ENST00000558013 ZNF267Q14586 743 aaPredicted RBP11.82□□□□□ -0.52
LDLR-207ENST00000558013 SFRP4Q6FHJ7 346 aaPredicted RBP11.82□□□□□ -0.52
LDLR-207ENST00000558013 PARGQ86W56 976 aa11.82□□□□□ -0.52
LDLR-207ENST00000558013 ZNF433Q8N7K0 673 aaPredicted RBP11.82□□□□□ -0.52
LDLR-207ENST00000558013 ZNF511Q8NB15 262 aa11.82□□□□□ -0.52
LDLR-207ENST00000558013 LGALS14Q8TCE9 139 aa11.82□□□□□ -0.52
LDLR-207ENST00000558013 PIGKQ92643 395 aa11.82□□□□□ -0.52
LDLR-207ENST00000558013 ELSPBP1Q96BH3 223 aa11.82□□□□□ -0.52
LDLR-207ENST00000558013 GFI1Q99684 422 aa11.82□□□□□ -0.52
LDLR-207ENST00000558013 CACNG6Q9BXT2 260 aa11.82□□□□□ -0.52
LDLR-207ENST00000558013 TEX13CA0A0J9YWL9 993 aa11.82□□□□□ -0.52
LDLR-207ENST00000558013 A0A1B0GTH9 108 aa11.82□□□□□ -0.52
LDLR-207ENST00000558013 C17orf51A8MQB3 221 aa11.82□□□□□ -0.52
LDLR-207ENST00000558013 FMO6PO60774 539 aa11.82□□□□□ -0.52
LDLR-207ENST00000558013 EDNRAP25101 427 aa11.82□□□□□ -0.52
LDLR-207ENST00000558013 SLC6A6P31641 620 aa11.82□□□□□ -0.52
LDLR-207ENST00000558013 NANOS3P60323 173 aaKnown RBP11.82□□□□□ -0.52
LDLR-207ENST00000558013 CDK5R1Q15078 307 aa11.82□□□□□ -0.52
LDLR-207ENST00000558013 MOSPD2Q8NHP6 518 aa11.82□□□□□ -0.52
LDLR-207ENST00000558013 CLIP3Q96DZ5 547 aa11.82□□□□□ -0.52
LDLR-207ENST00000558013 SPACA6W5XKT8 324 aa11.82□□□□□ -0.52
LDLR-207ENST00000558013 C2orf74A8MZ97 194 aa11.82□□□□□ -0.52
LDLR-207ENST00000558013 GNG2P59768 71 aa11.82□□□□□ -0.52
LDLR-207ENST00000558013 ILF3Q12906 894 aaKnown RBP eCLIP11.82□□□□□ -0.528e-8■■■□□ 17.5
LDLR-207ENST00000558013 PYHIN1Q6K0P9 492 aa11.82□□□□□ -0.52
LDLR-207ENST00000558013 FAAP20Q6NZ36 180 aa11.82□□□□□ -0.52
LDLR-207ENST00000558013 TPRA1Q86W33 373 aa11.82□□□□□ -0.52
LDLR-207ENST00000558013 RIT1Q92963 219 aa11.82□□□□□ -0.52
LDLR-207ENST00000558013 SCMH1Q96GD3 660 aa11.82□□□□□ -0.52
LDLR-207ENST00000558013 GTPBP2Q9BX10 602 aaKnown RBP11.82□□□□□ -0.52
LDLR-207ENST00000558013 TSPAN10Q9H1Z9 355 aaPredicted RBP11.82□□□□□ -0.52
LDLR-207ENST00000558013 ZFP64Q9NPA5 681 aa11.82□□□□□ -0.52
LDLR-207ENST00000558013 NOX4Q9NPH5 578 aa11.82□□□□□ -0.52
LDLR-207ENST00000558013 MGAT4AQ9UM21 535 aa11.82□□□□□ -0.52
LDLR-207ENST00000558013 TICRRQ7Z2Z1 1910 aa11.81□□□□□ -0.52
LDLR-207ENST00000558013 EML5Q05BV3 1969 aa11.81□□□□□ -0.52
LDLR-207ENST00000558013 ARHGEF9O43307 516 aa11.81□□□□□ -0.52
LDLR-207ENST00000558013 GMDSO60547 372 aa11.81□□□□□ -0.52
LDLR-207ENST00000558013 TOXO94900 526 aa11.81□□□□□ -0.52
LDLR-207ENST00000558013 RPP14O95059 124 aaKnown RBP11.81□□□□□ -0.52
LDLR-207ENST00000558013 SSTR2P30874 369 aa11.81□□□□□ -0.52
LDLR-207ENST00000558013 RPS15P62841 145 aaKnown RBP11.81□□□□□ -0.52
LDLR-207ENST00000558013 RPL13AP3Q6NVV1 102 aa11.81□□□□□ -0.52
LDLR-207ENST00000558013 PLCZ1Q86YW0 608 aa11.81□□□□□ -0.52
LDLR-207ENST00000558013 SLC35F2Q8IXU6 374 aa11.81□□□□□ -0.52
LDLR-207ENST00000558013 OR7G1Q8NGA0 311 aa11.81□□□□□ -0.52
LDLR-207ENST00000558013 ZNF671Q8TAW3 534 aa11.81□□□□□ -0.52
LDLR-207ENST00000558013 KCTD12Q96CX2 325 aaKnown RBP11.81□□□□□ -0.52
LDLR-207ENST00000558013 SMIM19Q96E16 107 aa11.81□□□□□ -0.52
LDLR-207ENST00000558013 HSPA12BQ96MM6 686 aa11.81□□□□□ -0.52
LDLR-207ENST00000558013 INPP5EQ9NRR6 644 aa11.81□□□□□ -0.52
LDLR-207ENST00000558013 TEKT2Q9UIF3 430 aa11.81□□□□□ -0.52
LDLR-207ENST00000558013 BLOC1S5-TXNDC5H3BN57 136 aa11.81□□□□□ -0.52
LDLR-207ENST00000558013 FLRT2O43155 660 aa11.81□□□□□ -0.52
LDLR-207ENST00000558013 OIP5O43482 229 aa11.81□□□□□ -0.52
LDLR-207ENST00000558013 HPXP02790 462 aa11.81□□□□□ -0.52
LDLR-207ENST00000558013 HYAL1Q12794 435 aa11.81□□□□□ -0.52
LDLR-207ENST00000558013 SHHQ15465 462 aa11.81□□□□□ -0.52
LDLR-207ENST00000558013 ST3GAL2Q16842 350 aa11.81□□□□□ -0.52
LDLR-207ENST00000558013 UBE2Q1Q7Z7E8 422 aa11.81□□□□□ -0.52
LDLR-207ENST00000558013 CMTM4Q8IZR5 234 aa11.81□□□□□ -0.52
LDLR-207ENST00000558013 NPEPL1Q8NDH3 523 aa11.81□□□□□ -0.52
LDLR-207ENST00000558013 OR8H1Q8NGG4 311 aa11.81□□□□□ -0.52
LDLR-207ENST00000558013 RPLP0P6Q8NHW5 317 aa11.81□□□□□ -0.52
LDLR-207ENST00000558013 RBM18Q96H35 190 aaKnown RBP11.81□□□□□ -0.52
LDLR-207ENST00000558013 VSTM2LQ96N03 204 aa11.81□□□□□ -0.52
LDLR-207ENST00000558013 CNN2Q99439 309 aaKnown RBP11.81□□□□□ -0.52
LDLR-207ENST00000558013 UCKL1Q9NWZ5 548 aa11.81□□□□□ -0.52
LDLR-207ENST00000558013 NCDNQ9UBB6 729 aa11.81□□□□□ -0.52
LDLR-207ENST00000558013 ENTPD2Q9Y5L3 495 aa11.81□□□□□ -0.52
LDLR-207ENST00000558013 H7C1C5 153 aa11.8□□□□□ -0.52
LDLR-207ENST00000558013 FOXS1O43638 330 aa11.8□□□□□ -0.52
LDLR-207ENST00000558013 APBB3O95704 486 aa11.8□□□□□ -0.52
LDLR-207ENST00000558013 SLC35E2P0CK97 266 aa11.8□□□□□ -0.52
LDLR-207ENST00000558013 LCN6P62502 163 aa11.8□□□□□ -0.52
LDLR-207ENST00000558013 ARHGAP11AQ6P4F7 1023 aa11.8□□□□□ -0.52
LDLR-207ENST00000558013 LINC00114Q6XXX2 140 aa11.8□□□□□ -0.52
LDLR-207ENST00000558013 HAVCR2Q8TDQ0 301 aa11.8□□□□□ -0.52
LDLR-207ENST00000558013 Q96M85 177 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms