RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 MAPK1IP1LQ8NDC0 245 aa12.88□□□□□ -0.35
SHMT2-235ENST00000557740 OR52E4Q8NGH9 312 aa12.88□□□□□ -0.35
SHMT2-235ENST00000557740 OR52P1PQ8NH57 321 aa12.88□□□□□ -0.35
SHMT2-235ENST00000557740 REG4Q9BYZ8 158 aa12.88□□□□□ -0.35
SHMT2-235ENST00000557740 GRIP2Q9C0E4 1043 aa12.88□□□□□ -0.35
SHMT2-235ENST00000557740 RMND5AQ9H871 391 aa12.88□□□□□ -0.35
SHMT2-235ENST00000557740 FLVCR1Q9Y5Y0 555 aa12.88□□□□□ -0.35
SHMT2-235ENST00000557740 SLC25A15Q9Y619 301 aa12.88□□□□□ -0.35
SHMT2-235ENST00000557740 SONP18583 2426 aaKnown RBP12.88□□□□□ -0.35
SHMT2-235ENST00000557740 ZC3H12DA2A288 527 aaKnown RBP12.87□□□□□ -0.35
SHMT2-235ENST00000557740 TMEM247A6NEH6 219 aa12.87□□□□□ -0.35
SHMT2-235ENST00000557740 ZNF500O60304 480 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-235ENST00000557740 CD8AP01732 235 aa12.87□□□□□ -0.35
SHMT2-235ENST00000557740 TP53P04637 393 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-235ENST00000557740 PTNP21246 168 aa12.87□□□□□ -0.35
SHMT2-235ENST00000557740 CD40P25942 277 aa12.87□□□□□ -0.35
SHMT2-235ENST00000557740 NTF4P34130 210 aa12.87□□□□□ -0.35
SHMT2-235ENST00000557740 DSTNP60981 165 aa12.87□□□□□ -0.35
SHMT2-235ENST00000557740 H3F3AP84243 136 aa12.87□□□□□ -0.35
SHMT2-235ENST00000557740 TGFBR3Q03167 851 aa12.87□□□□□ -0.35
SHMT2-235ENST00000557740 SPOCK1Q08629 439 aa12.87□□□□□ -0.35
SHMT2-235ENST00000557740 SLC17A1Q14916 467 aa12.87□□□□□ -0.35
SHMT2-235ENST00000557740 LARS2Q15031 903 aaKnown RBP12.87□□□□□ -0.35
SHMT2-235ENST00000557740 NRF1Q16656 503 aa12.87□□□□□ -0.35
SHMT2-235ENST00000557740 GSTA3Q16772 222 aa12.87□□□□□ -0.35
SHMT2-235ENST00000557740 OTUD3Q5T2D3 398 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-235ENST00000557740 C9orf135Q5VTT2 229 aa12.87□□□□□ -0.35
SHMT2-235ENST00000557740 ZNF836Q6ZNA1 936 aa12.87□□□□□ -0.35
SHMT2-235ENST00000557740 MSANTD1Q6ZTZ1 278 aa12.87□□□□□ -0.35
SHMT2-235ENST00000557740 PRIMA1Q86XR5 153 aa12.87□□□□□ -0.35
SHMT2-235ENST00000557740 CADM2Q8N3J6 435 aa12.87□□□□□ -0.35
SHMT2-235ENST00000557740 C17orf78Q8N4C9 275 aa12.87□□□□□ -0.35
SHMT2-235ENST00000557740 ITCHQ96J02 903 aa12.87□□□□□ -0.35
SHMT2-235ENST00000557740 ADAD1Q96M93 576 aaKnown RBP12.87□□□□□ -0.35
SHMT2-235ENST00000557740 MANSC1Q9H8J5 431 aa12.87□□□□□ -0.35
SHMT2-235ENST00000557740 SLC6A13Q9NSD5 602 aa12.87□□□□□ -0.35
SHMT2-235ENST00000557740 RLIMQ9NVW2 624 aa12.87□□□□□ -0.35
SHMT2-235ENST00000557740 ZIM2Q9NZV7 527 aa12.87□□□□□ -0.35
SHMT2-235ENST00000557740 DCTN4Q9UJW0 460 aa12.87□□□□□ -0.35
SHMT2-235ENST00000557740 GDF2Q9UK05 429 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-235ENST00000557740 DSPPQ9NZW4 1301 aa12.87□□□□□ -0.35
SHMT2-235ENST00000557740 CDHR4A6H8M9 788 aa12.86□□□□□ -0.35
SHMT2-235ENST00000557740 LIPT2A6NK58 231 aa12.86□□□□□ -0.35
SHMT2-235ENST00000557740 UBDO15205 165 aa12.86□□□□□ -0.35
SHMT2-235ENST00000557740 NDUFS7O75251 213 aa12.86□□□□□ -0.35
SHMT2-235ENST00000557740 THBS1P07996 1170 aa12.86□□□□□ -0.35
SHMT2-235ENST00000557740 GKN3PP0CG01 181 aa12.86□□□□□ -0.35
SHMT2-235ENST00000557740 ETFAP13804 333 aa12.86□□□□□ -0.35
SHMT2-235ENST00000557740 NCF2P19878 526 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-235ENST00000557740 NUDT6P53370 316 aa12.86□□□□□ -0.35
SHMT2-235ENST00000557740 FOXG1P55316 489 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-235ENST00000557740 MAGOHP61326 146 aaKnown RBP12.86□□□□□ -0.35
SHMT2-235ENST00000557740 OR7A5Q15622 319 aa12.86□□□□□ -0.35
SHMT2-235ENST00000557740 GABRA6Q16445 453 aa12.86□□□□□ -0.35
SHMT2-235ENST00000557740 SLC9B1Q4ZJI4 515 aa12.86□□□□□ -0.35
SHMT2-235ENST00000557740 RPS26P11Q5JNZ5 115 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-235ENST00000557740 C6orf10Q5SRN2 563 aa12.86□□□□□ -0.35
SHMT2-235ENST00000557740 WBP2NLQ6ICG8 309 aa12.86□□□□□ -0.35
SHMT2-235ENST00000557740 KLHL24Q6TFL4 600 aa12.86□□□□□ -0.35
SHMT2-235ENST00000557740 LSRQ86X29 649 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-235ENST00000557740 VRK2Q86Y07 508 aa12.86□□□□□ -0.35
SHMT2-235ENST00000557740 FBXL14Q8N1E6 418 aa12.86□□□□□ -0.35
SHMT2-235ENST00000557740 C1orf162Q8NEQ5 155 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-235ENST00000557740 TMEM45BQ96B21 275 aa12.86□□□□□ -0.35
SHMT2-235ENST00000557740 AURKBQ96GD4 344 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-235ENST00000557740 MAELQ96JY0 434 aaKnown RBP12.86□□□□□ -0.35
SHMT2-235ENST00000557740 MUS81Q96NY9 551 aa12.86□□□□□ -0.35
SHMT2-235ENST00000557740 DHRS9Q9BPW9 319 aa12.86□□□□□ -0.35
SHMT2-235ENST00000557740 TAPBPLQ9BX59 468 aa12.86□□□□□ -0.35
SHMT2-235ENST00000557740 C1QTNF6Q9BXI9 259 aa12.86□□□□□ -0.35
SHMT2-235ENST00000557740 CACNG6Q9BXT2 260 aa12.86□□□□□ -0.35
SHMT2-235ENST00000557740 AMBRA1Q9C0C7 1298 aa12.86□□□□□ -0.35
SHMT2-235ENST00000557740 ADAM19Q9H013 955 aa12.86□□□□□ -0.35
SHMT2-235ENST00000557740 ARMC7Q9H6L4 198 aa12.86□□□□□ -0.35
SHMT2-235ENST00000557740 TPT1P8Q9HAU6 139 aa12.86□□□□□ -0.35
SHMT2-235ENST00000557740 SLC7A10Q9NS82 523 aa12.86□□□□□ -0.35
SHMT2-235ENST00000557740 CBLN4Q9NTU7 201 aa12.86□□□□□ -0.35
SHMT2-235ENST00000557740 THUMPD1Q9NXG2 353 aaKnown RBP12.86□□□□□ -0.35
SHMT2-235ENST00000557740 PRDM4Q9UKN5 801 aa12.86□□□□□ -0.35
SHMT2-235ENST00000557740 ZNF443Q9Y2A4 671 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-235ENST00000557740 B3GALT5Q9Y2C3 310 aa12.86□□□□□ -0.35
SHMT2-235ENST00000557740 AMDHD2Q9Y303 409 aa12.86□□□□□ -0.35
SHMT2-235ENST00000557740 PLCE1Q9P212 2302 aa12.85□□□□□ -0.35
SHMT2-235ENST00000557740 AQP7P3A6NL99 342 aa12.85□□□□□ -0.35
SHMT2-235ENST00000557740 KIAA1324LA8MWY0 1029 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-235ENST00000557740 E7EQL1 145 aa12.85□□□□□ -0.35
SHMT2-235ENST00000557740 PDLIM1O00151 329 aa12.85□□□□□ -0.35
SHMT2-235ENST00000557740 SSX4O60224 188 aa12.85□□□□□ -0.35
SHMT2-235ENST00000557740 AKR7A3O95154 331 aa12.85□□□□□ -0.35
SHMT2-235ENST00000557740 ZCCHC18P0CG32 403 aa12.85□□□□□ -0.35
SHMT2-235ENST00000557740 TTKP33981 857 aa12.85□□□□□ -0.35
SHMT2-235ENST00000557740 POLR2JP52435 117 aaKnown RBP12.85□□□□□ -0.35
SHMT2-235ENST00000557740 MVDP53602 400 aa12.85□□□□□ -0.35
SHMT2-235ENST00000557740 SLC18A1P54219 525 aa12.85□□□□□ -0.35
SHMT2-235ENST00000557740 KRTAP1-1Q07627 177 aa12.85□□□□□ -0.35
SHMT2-235ENST00000557740 CEACAM7Q14002 265 aa12.85□□□□□ -0.35
SHMT2-235ENST00000557740 MAPK11Q15759 364 aa12.85□□□□□ -0.35
SHMT2-235ENST00000557740 ZSWIM7Q19AV6 140 aa12.85□□□□□ -0.35
SHMT2-235ENST00000557740 GTDC1Q4AE62 458 aa12.85□□□□□ -0.35
SHMT2-235ENST00000557740 TSPO2Q5TGU0 170 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms