RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	CHN2	P52757	468 aa		11.03	□□□□□ -0.64
SHMT2-223	ENST00000556689	SLC35A1	P78382	337 aa		11.03	□□□□□ -0.64
SHMT2-223	ENST00000556689	PTGR1	Q14914	329 aa		11.03	□□□□□ -0.64
SHMT2-223	ENST00000556689	SLC17A1	Q14916	467 aa		11.03	□□□□□ -0.64
SHMT2-223	ENST00000556689	MAPK14	Q16539	360 aa		11.03	□□□□□ -0.64
SHMT2-223	ENST00000556689	OLIG3	Q7RTU3	272 aa		11.03	□□□□□ -0.64
SHMT2-223	ENST00000556689	C16orf62	Q7Z3J2	963 aa		11.03	□□□□□ -0.64
SHMT2-223	ENST00000556689	LINC01356	Q8N9X3	169 aa		11.03	□□□□□ -0.64
SHMT2-223	ENST00000556689	OIT3	Q8WWZ8	545 aa		11.03	□□□□□ -0.64
SHMT2-223	ENST00000556689	BOD1	Q96IK1	185 aa		11.03	□□□□□ -0.64
SHMT2-223	ENST00000556689	ZNF350	Q9GZX5	532 aa		11.03	□□□□□ -0.64
SHMT2-223	ENST00000556689	RAB1B	Q9H0U4	201 aa		11.03	□□□□□ -0.64
SHMT2-223	ENST00000556689	SSU72	Q9NP77	194 aa	Known RBP	11.03	□□□□□ -0.64
SHMT2-223	ENST00000556689	OBP2B	Q9NPH6	170 aa		11.03	□□□□□ -0.64
SHMT2-223	ENST00000556689	CA10	Q9NS85	328 aa		11.03	□□□□□ -0.64
SHMT2-223	ENST00000556689	GIMAP2	Q9UG22	337 aa		11.03	□□□□□ -0.64
SHMT2-223	ENST00000556689	FBXO9	Q9UK97	447 aa	Predicted RBP	11.03	□□□□□ -0.64
SHMT2-223	ENST00000556689	IGHV1-18	A0A0C4DH31	117 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	VSTM5	A8MXK1	200 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	BCAS1	O75363	584 aa	Predicted RBP	11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	AGR2	O95994	175 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	CRYAA	P02489	173 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	GUSB	P08236	651 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	OR4A8	P0C604	315 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	HTR3A	P46098	478 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	IDH2	P48735	452 aa	Known RBP	11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	MAGOH	P61326	146 aa	Known RBP	11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	KCNJ10	P78508	379 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	ADIPOQ	Q15848	244 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	ZSWIM7	Q19AV6	140 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	ATP6AP1L	Q52LC2	224 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	HIKESHI	Q53FT3	197 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	ATAD3B	Q5T9A4	648 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	IL23R	Q5VWK5	629 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	AP1AR	Q63HQ0	302 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	UGT2A3	Q6UWM9	527 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	ABHD12B	Q7Z5M8	362 aa	Predicted RBP	11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	RIMKLA	Q8IXN7	391 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	KRTCAP2	Q8N6L1	136 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	POMGNT2	Q8NAT1	580 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	FAM71C	Q8NEG0	241 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	XAGE5	Q8WWM1	108 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	HPS1	Q92902	700 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	DDIT4L	Q96D03	193 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	SLC38A2	Q96QD8	506 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	DUSP26	Q9BV47	211 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	KATNB1	Q9BVA0	655 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	ADAM19	Q9H013	955 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	PLK3	Q9H4B4	646 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	SERHL2	Q9H4I8	314 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	KCNK9	Q9NPC2	374 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	ST6GALNAC1	Q9NSC7	600 aa	Predicted RBP	11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	TMEM45A	Q9NWC5	275 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	MKS1	Q9NXB0	559 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	METRN	Q9UJH8	293 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	PCDHGB4	Q9UN71	923 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	WDR45	Q9Y484	360 aa		11.02	□□□□□ -0.65
SHMT2-223	ENST00000556689	TMED7-TICAM2	A0A0A6YYA0	188 aa		11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	TMEM233	B4DJY2	109 aa		11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	TM9SF1	O15321	606 aa		11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	LILRA1	O75019	489 aa		11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	KRT33A	O76009	404 aa		11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	PDE5A	O76074	875 aa		11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	SNUPN	O95149	360 aa	Known RBP	11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	CHRNG	P07510	517 aa		11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	ERCC1	P07992	297 aa	Predicted RBP	11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	TACSTD2	P09758	323 aa		11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	IMPDH2	P12268	514 aa		11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	DAO	P14920	347 aa		11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	GIF	P27352	417 aa		11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	APEX1	P27695	318 aa	Known RBP	11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	PPOX	P50336	477 aa		11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	UBE2N	P61088	152 aa	Known RBP	11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	EFNB3	Q15768	340 aa		11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	PGS1	Q32NB8	556 aa		11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	C6orf136	Q5SQH8	315 aa		11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	TYW3	Q6IPR3	259 aa	Known RBP	11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	ANKRD16	Q6P6B7	361 aa		11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	VHLL	Q6RSH7	139 aa		11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	PAQR6	Q6TCH4	344 aa		11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	AAED1	Q7RTV5	226 aa		11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	C4orf33	Q8N1A6	199 aa		11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	CLEC4F	Q8N1N0	589 aa		11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	KIRREL3-AS3	Q8N7Y1	241 aa	Predicted RBP	11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	FNDC5	Q8NAU1	212 aa		11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	DYDC1	Q8WWB3	177 aa		11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	NEU4	Q8WWR8	484 aa	Predicted RBP	11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	TMEM45B	Q96B21	275 aa		11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	ZG16B	Q96DA0	208 aa		11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	AURKB	Q96GD4	344 aa	Predicted RBP	11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	SLC35G5	Q96KT7	338 aa		11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	C1orf50	Q9BV19	199 aa		11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	OR51I1	Q9H343	314 aa		11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	HEATR1	Q9H583	2144 aa	Known RBP	11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	OCEL1	Q9H607	264 aa		11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	EXOSC3	Q9NQT5	275 aa	Known RBP	11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	POLE3	Q9NRF9	147 aa		11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689	TMED7	Q9Y3B3	224 aa		11.01	□□□□□ -0.65
SHMT2-223	ENST00000556689		A0A0A6YYJ9	748 aa		11	□□□□□ -0.65
SHMT2-223	ENST00000556689	RNF103-CHMP3	A0A140T963	221 aa		11	□□□□□ -0.65

Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms