RNA–Protein interactions for RNA: ENST00000553605.1

PRPF39-204, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-204ENST00000553605 OR11A1Q9GZK7 315 aa11.85□□□□□ -0.51
PRPF39-204ENST00000553605 MRPL46Q9H2W6 279 aaKnown RBP11.85□□□□□ -0.51
PRPF39-204ENST00000553605 OXSMQ9NWU1 459 aa11.85□□□□□ -0.51
PRPF39-204ENST00000553605 TMEM181Q9P2C4 612 aa11.85□□□□□ -0.51
PRPF39-204ENST00000553605 TRAPPC4Q9Y296 219 aa11.85□□□□□ -0.51
PRPF39-204ENST00000553605 A0A096LPE4 126 aa11.84□□□□□ -0.51
PRPF39-204ENST00000553605 IGHV2OR16-5A0A0B4J2B6 119 aa11.84□□□□□ -0.51
PRPF39-204ENST00000553605 A0A1W2PPZ6 126 aa11.84□□□□□ -0.51
PRPF39-204ENST00000553605 M0QZ24 198 aa11.84□□□□□ -0.51
PRPF39-204ENST00000553605 GSNP06396 782 aa11.84□□□□□ -0.51
PRPF39-204ENST00000553605 SBK3P0C264 359 aa11.84□□□□□ -0.51
PRPF39-204ENST00000553605 CBR1P16152 277 aa11.84□□□□□ -0.51
PRPF39-204ENST00000553605 FRKP42685 505 aaPredicted RBP11.84□□□□□ -0.51
PRPF39-204ENST00000553605 MAGEA4P43358 317 aa11.84□□□□□ -0.51
PRPF39-204ENST00000553605 SLC35A1P78382 337 aa11.84□□□□□ -0.51
PRPF39-204ENST00000553605 MRPS11P82912 194 aaKnown RBP11.84□□□□□ -0.51
PRPF39-204ENST00000553605 SNTB2Q13425 540 aaKnown RBP11.84□□□□□ -0.51
PRPF39-204ENST00000553605 IMPG1Q17R60 797 aa11.84□□□□□ -0.51
PRPF39-204ENST00000553605 ZNF385BQ569K4 471 aa11.84□□□□□ -0.51
PRPF39-204ENST00000553605 ZNF678Q5SXM1 525 aa11.84□□□□□ -0.51
PRPF39-204ENST00000553605 PDZK1Q5T2W1 519 aa11.84□□□□□ -0.51
PRPF39-204ENST00000553605 KRT80Q6KB66 452 aa11.84□□□□□ -0.51
PRPF39-204ENST00000553605 TREML1Q86YW5 311 aa11.84□□□□□ -0.51
PRPF39-204ENST00000553605 ZIC4Q8N9L1 334 aa11.84□□□□□ -0.51
PRPF39-204ENST00000553605 ADAMTS15Q8TE58 950 aa11.84□□□□□ -0.51
PRPF39-204ENST00000553605 TMIGD2Q96BF3 282 aa11.84□□□□□ -0.51
PRPF39-204ENST00000553605 RAB39BQ96DA2 213 aa11.84□□□□□ -0.51
PRPF39-204ENST00000553605 FAM120BQ96EK7 910 aaKnown RBP11.84□□□□□ -0.51
PRPF39-204ENST00000553605 MRPL37Q9BZE1 423 aaKnown RBP11.84□□□□□ -0.51
PRPF39-204ENST00000553605 DPH5Q9H2P9 285 aa11.84□□□□□ -0.51
PRPF39-204ENST00000553605 ZCCHC3Q9NUD5 404 aaKnown RBP11.84□□□□□ -0.51
PRPF39-204ENST00000553605 GRHL1Q9NZI5 618 aa11.84□□□□□ -0.51
PRPF39-204ENST00000553605 SH3BP4Q9P0V3 963 aa11.84□□□□□ -0.51
PRPF39-204ENST00000553605 MMP24Q9Y5R2 645 aa11.84□□□□□ -0.51
PRPF39-204ENST00000553605 KCNE3Q9Y6H6 103 aa11.84□□□□□ -0.51
PRPF39-204ENST00000553605 ZNF587BE7ETH6 402 aa11.83□□□□□ -0.52
PRPF39-204ENST00000553605 ANKRD28O15084 1053 aa11.83□□□□□ -0.52
PRPF39-204ENST00000553605 DEAF1O75398 565 aaPredicted RBP11.83□□□□□ -0.52
PRPF39-204ENST00000553605 RP2O75695 350 aa11.83□□□□□ -0.52
PRPF39-204ENST00000553605 ENO1P06733 434 aaKnown RBP11.83□□□□□ -0.52
PRPF39-204ENST00000553605 HOXB1P14653 301 aaPredicted RBP11.83□□□□□ -0.52
PRPF39-204ENST00000553605 OMGP23515 440 aa11.83□□□□□ -0.52
PRPF39-204ENST00000553605 ALDH3B1P43353 468 aa11.83□□□□□ -0.52
PRPF39-204ENST00000553605 SEC24CP53992 1094 aa11.83□□□□□ -0.52
PRPF39-204ENST00000553605 MRPS25P82663 173 aaKnown RBP11.83□□□□□ -0.52
PRPF39-204ENST00000553605 MVKQ03426 396 aa11.83□□□□□ -0.52
PRPF39-204ENST00000553605 TEX35Q5T0J7 233 aa11.83□□□□□ -0.52
PRPF39-204ENST00000553605 OTUD3Q5T2D3 398 aaPredicted RBP11.83□□□□□ -0.52
PRPF39-204ENST00000553605 SAXO2Q658L1 398 aa11.83□□□□□ -0.52
PRPF39-204ENST00000553605 C17orf107Q6ZR85 190 aa11.83□□□□□ -0.52
PRPF39-204ENST00000553605 TMEM151AQ8N4L1 468 aa11.83□□□□□ -0.52
PRPF39-204ENST00000553605 ZNF563Q8TA94 476 aa11.83□□□□□ -0.52
PRPF39-204ENST00000553605 PPCDCQ96CD2 204 aa11.83□□□□□ -0.52
PRPF39-204ENST00000553605 ZNF764Q96H86 408 aaPredicted RBP11.83□□□□□ -0.52
PRPF39-204ENST00000553605 ZNF385AQ96PM9 386 aaKnown RBP11.83□□□□□ -0.52
PRPF39-204ENST00000553605 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.83□□□□□ -0.52
PRPF39-204ENST00000553605 WNK2Q9Y3S1 2297 aa11.83□□□□□ -0.52
PRPF39-204ENST00000553605 CLDN34H7C241 214 aa11.82□□□□□ -0.52
PRPF39-204ENST00000553605 URI1O94763 535 aaPredicted RBP11.82□□□□□ -0.52
PRPF39-204ENST00000553605 CSTAP01040 98 aa11.82□□□□□ -0.52
PRPF39-204ENST00000553605 KNG1P01042 644 aa11.82□□□□□ -0.52
PRPF39-204ENST00000553605 UBTFL6P0CB48 400 aaPredicted RBP11.82□□□□□ -0.52
PRPF39-204ENST00000553605 TCP1P17987 556 aaKnown RBP11.82□□□□□ -0.52
PRPF39-204ENST00000553605 CCNA2P20248 432 aa11.82□□□□□ -0.52
PRPF39-204ENST00000553605 EFNA1P20827 205 aaPredicted RBP11.82□□□□□ -0.52
PRPF39-204ENST00000553605 MAGEA12P43365 314 aa11.82□□□□□ -0.52
PRPF39-204ENST00000553605 PKNOX1P55347 436 aa11.82□□□□□ -0.52
PRPF39-204ENST00000553605 MSMPQ1L6U9 139 aa11.82□□□□□ -0.52
PRPF39-204ENST00000553605 AVPI1Q5T686 147 aa11.82□□□□□ -0.52
PRPF39-204ENST00000553605 GRINAQ7Z429 371 aa11.82□□□□□ -0.52
PRPF39-204ENST00000553605 ADGRG3Q86Y34 549 aa11.82□□□□□ -0.52
PRPF39-204ENST00000553605 IL17RDQ8NFM7 739 aa11.82□□□□□ -0.52
PRPF39-204ENST00000553605 UBE2FQ969M7 185 aa11.82□□□□□ -0.52
PRPF39-204ENST00000553605 ACTRT3Q9BYD9 372 aa11.82□□□□□ -0.52
PRPF39-204ENST00000553605 NELFAQ9H3P2 528 aa11.82□□□□□ -0.52
PRPF39-204ENST00000553605 REEP4Q9H6H4 257 aa11.82□□□□□ -0.52
PRPF39-204ENST00000553605 NOX3Q9HBY0 568 aa11.82□□□□□ -0.52
PRPF39-204ENST00000553605 CRLF2Q9HC73 371 aa11.82□□□□□ -0.52
PRPF39-204ENST00000553605 SIRT3Q9NTG7 399 aaPredicted RBP11.82□□□□□ -0.52
PRPF39-204ENST00000553605 ZNF69Q9UC07 566 aa11.82□□□□□ -0.52
PRPF39-204ENST00000553605 NUP50Q9UKX7 468 aa11.82□□□□□ -0.52
PRPF39-204ENST00000553605 STK38LQ9Y2H1 464 aa11.82□□□□□ -0.52
PRPF39-204ENST00000553605 NPIPB8E9PQR5 432 aa11.81□□□□□ -0.52
PRPF39-204ENST00000553605 CCDC188H7C350 402 aa11.81□□□□□ -0.52
PRPF39-204ENST00000553605 TIMM23O14925 209 aa11.81□□□□□ -0.52
PRPF39-204ENST00000553605 AKAP10O43572 662 aa11.81□□□□□ -0.52
PRPF39-204ENST00000553605 TBX19O60806 448 aa11.81□□□□□ -0.52
PRPF39-204ENST00000553605 NCR1O76036 304 aa11.81□□□□□ -0.52
PRPF39-204ENST00000553605 IMPDH2P12268 514 aa11.81□□□□□ -0.52
PRPF39-204ENST00000553605 NR4A1P22736 598 aa11.81□□□□□ -0.52
PRPF39-204ENST00000553605 PCGF2P35227 344 aa11.81□□□□□ -0.52
PRPF39-204ENST00000553605 ARR3P36575 388 aa11.81□□□□□ -0.52
PRPF39-204ENST00000553605 NPRL3Q12980 569 aa11.81□□□□□ -0.52
PRPF39-204ENST00000553605 SLC9A3R2Q15599 337 aa11.81□□□□□ -0.52
PRPF39-204ENST00000553605 PAQR6Q6TCH4 344 aa11.81□□□□□ -0.52
PRPF39-204ENST00000553605 GSPT2Q8IYD1 628 aaKnown RBP11.81□□□□□ -0.52
PRPF39-204ENST00000553605 BCL6BQ8N143 479 aaPredicted RBP11.81□□□□□ -0.52
PRPF39-204ENST00000553605 KIR3DL3Q8N743 410 aa11.81□□□□□ -0.52
PRPF39-204ENST00000553605 OR9K2Q8NGE7 335 aa11.81□□□□□ -0.52
PRPF39-204ENST00000553605 WFDC12Q8WWY7 111 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms