RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 SCO2O43819 266 aa23.99■■□□□ 1.43
CCDC88C-205ENST00000553403 ZNF28P17035 718 aa23.99■■□□□ 1.43
CCDC88C-205ENST00000553403 RPL4P36578 427 aaKnown RBP23.99■■□□□ 1.43
CCDC88C-205ENST00000553403 POU4F2Q12837 409 aa23.99■■□□□ 1.43
CCDC88C-205ENST00000553403 OR52E2Q8NGJ4 325 aa23.99■■□□□ 1.43
CCDC88C-205ENST00000553403 DEPDC7Q96QD5 511 aa23.99■■□□□ 1.43
CCDC88C-205ENST00000553403 EXOSC4Q9NPD3 245 aaKnown RBP23.99■■□□□ 1.43
CCDC88C-205ENST00000553403 NANSQ9NR45 359 aa23.99■■□□□ 1.43
CCDC88C-205ENST00000553403 USP34Q70CQ2 3546 aa23.98■■□□□ 1.43
CCDC88C-205ENST00000553403 ZC3H12DA2A288 527 aaKnown RBP23.98■■□□□ 1.43
CCDC88C-205ENST00000553403 WWP2O00308 870 aa23.98■■□□□ 1.43
CCDC88C-205ENST00000553403 ADAM10O14672 748 aa23.98■■□□□ 1.43
CCDC88C-205ENST00000553403 FLRT2O43155 660 aa23.98■■□□□ 1.43
CCDC88C-205ENST00000553403 ZFAND5O76080 213 aa23.98■■□□□ 1.43
CCDC88C-205ENST00000553403 HIST1H1CP16403 213 aaKnown RBP23.98■■□□□ 1.43
CCDC88C-205ENST00000553403 CXCR1P25024 350 aa23.98■■□□□ 1.43
CCDC88C-205ENST00000553403 RPS7P62081 194 aaKnown RBP23.98■■□□□ 1.43
CCDC88C-205ENST00000553403 TCEAL6Q6IPX3 200 aa23.98■■□□□ 1.43
CCDC88C-205ENST00000553403 TMPRSS11AQ6ZMR5 421 aa23.98■■□□□ 1.43
CCDC88C-205ENST00000553403 FAM98AQ8NCA5 519 aaKnown RBP23.98■■□□□ 1.43
CCDC88C-205ENST00000553403 B4GALNT2Q8NHY0 566 aa23.98■■□□□ 1.43
CCDC88C-205ENST00000553403 TCEAL3Q969E4 200 aa23.98■■□□□ 1.43
CCDC88C-205ENST00000553403 TMCO6Q96DC7 493 aa23.98■■□□□ 1.43
CCDC88C-205ENST00000553403 NDEL1Q9GZM8 345 aa23.98■■□□□ 1.43
CCDC88C-205ENST00000553403 ASCC3Q8N3C0 2202 aaKnown RBP23.97■■□□□ 1.43
CCDC88C-205ENST00000553403 TMEM200CA6NKL6 621 aa23.97■■□□□ 1.43
CCDC88C-205ENST00000553403 ASAH2BP0C7U1 165 aa23.97■■□□□ 1.43
CCDC88C-205ENST00000553403 CCL4P13236 92 aa23.97■■□□□ 1.43
CCDC88C-205ENST00000553403 APEHP13798 732 aaKnown RBP23.97■■□□□ 1.43
CCDC88C-205ENST00000553403 ZNF322Q6U7Q0 402 aaPredicted RBP23.97■■□□□ 1.43
CCDC88C-205ENST00000553403 IGFN1Q86VF2 1251 aa23.97■■□□□ 1.43
CCDC88C-205ENST00000553403 C10orf53Q8N6V4 93 aa23.97■■□□□ 1.43
CCDC88C-205ENST00000553403 CYB561A3Q8NBI2 242 aa23.97■■□□□ 1.43
CCDC88C-205ENST00000553403 HGDQ93099 445 aa23.97■■□□□ 1.43
CCDC88C-205ENST00000553403 AKIRIN1Q9H9L7 192 aaPredicted RBP23.97■■□□□ 1.43
CCDC88C-205ENST00000553403 SF3B6Q9Y3B4 125 aaKnown RBP23.97■■□□□ 1.43
CCDC88C-205ENST00000553403 LOC102723996A0A087X1L8 192 aa23.96■■□□□ 1.43
CCDC88C-205ENST00000553403 C12orf71A8MTZ7 269 aa23.96■■□□□ 1.43
CCDC88C-205ENST00000553403 B4E171 279 aa23.96■■□□□ 1.43
CCDC88C-205ENST00000553403 ZNF670-ZNF695F2Z2N8 137 aa23.96■■□□□ 1.43
CCDC88C-205ENST00000553403 AKAP8O43823 692 aaKnown RBP23.96■■□□□ 1.43
CCDC88C-205ENST00000553403 CCKBRP32239 447 aa23.96■■□□□ 1.43
CCDC88C-205ENST00000553403 SOX6P35712 828 aa23.96■■□□□ 1.43
CCDC88C-205ENST00000553403 CD79BP40259 229 aa23.96■■□□□ 1.43
CCDC88C-205ENST00000553403 TSPAN7P41732 249 aa23.96■■□□□ 1.43
CCDC88C-205ENST00000553403 BDH1Q02338 343 aa23.96■■□□□ 1.43
CCDC88C-205ENST00000553403 TOMM34Q15785 309 aaPredicted RBP23.96■■□□□ 1.43
CCDC88C-205ENST00000553403 B3GLCTQ6Y288 498 aa23.96■■□□□ 1.43
CCDC88C-205ENST00000553403 LRRC75AQ8NAA5 344 aa23.96■■□□□ 1.43
CCDC88C-205ENST00000553403 OR4K13Q8NH42 304 aa23.96■■□□□ 1.43
CCDC88C-205ENST00000553403 GPR119Q8TDV5 335 aa23.96■■□□□ 1.43
CCDC88C-205ENST00000553403 RHBDD1Q8TEB9 315 aa23.96■■□□□ 1.43
CCDC88C-205ENST00000553403 SPRYD4Q8WW59 207 aaPredicted RBP23.96■■□□□ 1.43
CCDC88C-205ENST00000553403 TTC9Q92623 222 aa23.96■■□□□ 1.43
CCDC88C-205ENST00000553403 CDADC1Q9BWV3 514 aa23.96■■□□□ 1.43
CCDC88C-205ENST00000553403 ASPNQ9BXN1 380 aa23.96■■□□□ 1.43
CCDC88C-205ENST00000553403 FKRPQ9H9S5 495 aa23.96■■□□□ 1.43
CCDC88C-205ENST00000553403 ZNF229Q9UJW7 825 aa23.96■■□□□ 1.43
CCDC88C-205ENST00000553403 VPS13AQ96RL7 3174 aa23.96■■□□□ 1.43
CCDC88C-205ENST00000553403 IMPA2O14732 288 aa23.95■■□□□ 1.43
CCDC88C-205ENST00000553403 GDF9O60383 454 aa23.95■■□□□ 1.43
CCDC88C-205ENST00000553403 NUDT14O95848 222 aa23.95■■□□□ 1.43
CCDC88C-205ENST00000553403 SBK2P0C263 348 aa23.95■■□□□ 1.43
CCDC88C-205ENST00000553403 POLR2HP52434 150 aaKnown RBP23.95■■□□□ 1.43
CCDC88C-205ENST00000553403 LTBQ06643 244 aa23.95■■□□□ 1.43
CCDC88C-205ENST00000553403 C16orf47Q6ZP98 133 aaPredicted RBP23.95■■□□□ 1.43
CCDC88C-205ENST00000553403 TMEM99Q8N816 258 aa23.95■■□□□ 1.43
CCDC88C-205ENST00000553403 SDR9C7Q8NEX9 313 aa23.95■■□□□ 1.43
CCDC88C-205ENST00000553403 MOSPD2Q8NHP6 518 aa23.95■■□□□ 1.43
CCDC88C-205ENST00000553403 RNF138Q8WVD3 245 aa23.95■■□□□ 1.43
CCDC88C-205ENST00000553403 KTI12Q96EK9 354 aaPredicted RBP23.95■■□□□ 1.43
CCDC88C-205ENST00000553403 MOGAT1Q96PD6 335 aa23.95■■□□□ 1.43
CCDC88C-205ENST00000553403 DDOQ99489 341 aa23.95■■□□□ 1.43
CCDC88C-205ENST00000553403 OCEL1Q9H607 264 aa23.95■■□□□ 1.43
CCDC88C-205ENST00000553403 B3GNT3Q9Y2A9 372 aa23.95■■□□□ 1.43
CCDC88C-205ENST00000553403 CORINQ9Y5Q5 1042 aa23.95■■□□□ 1.43
CCDC88C-205ENST00000553403 MYO15AQ9UKN7 3530 aa23.95■■□□□ 1.42
CCDC88C-205ENST00000553403 GABRA5P31644 462 aa23.95■■□□□ 1.42
CCDC88C-205ENST00000553403 UQCRC1P31930 480 aa23.95■■□□□ 1.42
CCDC88C-205ENST00000553403 SLC16A1P53985 500 aa23.95■■□□□ 1.42
CCDC88C-205ENST00000553403 LGALS3BPQ08380 585 aa23.95■■□□□ 1.42
CCDC88C-205ENST00000553403 GALEQ14376 348 aa23.95■■□□□ 1.42
CCDC88C-205ENST00000553403 QPRTQ15274 297 aa23.95■■□□□ 1.42
CCDC88C-205ENST00000553403 ZNF791Q3KP31 576 aaPredicted RBP23.95■■□□□ 1.42
CCDC88C-205ENST00000553403 LCN1P1Q5VSP4 162 aa23.95■■□□□ 1.42
CCDC88C-205ENST00000553403 FAM198BQ6UWH4 519 aa23.95■■□□□ 1.42
CCDC88C-205ENST00000553403 MFSD4AQ8N468 514 aa23.95■■□□□ 1.42
CCDC88C-205ENST00000553403 DUSP19Q8WTR2 217 aa23.95■■□□□ 1.42
CCDC88C-205ENST00000553403 MR1Q95460 341 aa23.95■■□□□ 1.42
CCDC88C-205ENST00000553403 C8orf44Q96CB5 159 aa23.95■■□□□ 1.42
CCDC88C-205ENST00000553403 ADGRL4Q9HBW9 690 aa23.95■■□□□ 1.42
CCDC88C-205ENST00000553403 SLC39A1Q9NY26 324 aa23.95■■□□□ 1.42
CCDC88C-205ENST00000553403 TAS2R10Q9NYW0 307 aa23.95■■□□□ 1.42
CCDC88C-205ENST00000553403 ADAM18Q9Y3Q7 739 aa23.95■■□□□ 1.42
CCDC88C-205ENST00000553403 TRAV36DV7A0A075B6V5 113 aa23.94■■□□□ 1.42
CCDC88C-205ENST00000553403 A0A1B0GVG6 124 aa23.94■■□□□ 1.42
CCDC88C-205ENST00000553403 DAPL1A0PJW8 107 aa23.94■■□□□ 1.42
CCDC88C-205ENST00000553403 C9J4A7 227 aa23.94■■□□□ 1.42
CCDC88C-205ENST00000553403 J3QRK9 145 aa23.94■■□□□ 1.42
CCDC88C-205ENST00000553403 SLC30A4O14863 429 aa23.94■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms