RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 ITPR3Q14573 2671 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 DOCK2Q92608 1830 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 ZNF236Q9UL36 1845 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 SHROOM3Q8TF72 1996 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 ZZEF1O43149 2961 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 FRG2CA6NGY1 282 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 SAGE2PA6NJ88 616 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 A8MUI8 341 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 XPO1O14980 1071 aaKnown RBP3.67□□□□□ -1.82
LIMA1-205ENST00000550592 LATO43561 262 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 NUDT21O43809 227 aaKnown RBP3.67□□□□□ -1.82
LIMA1-205ENST00000550592 EFNA2O43921 213 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 NEBLO76041 1014 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 NOL4O94818 638 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 SNAI1O95863 264 aaPredicted RBP3.67□□□□□ -1.82
LIMA1-205ENST00000550592 MMP1P03956 469 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 PRB1P04280 392 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 TPSB2P20231 275 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 HNRNPA2B1P22626 353 aaKnown RBP3.67□□□□□ -1.82
LIMA1-205ENST00000550592 CA8P35219 290 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 CSTF1Q05048 431 aaKnown RBP3.67□□□□□ -1.82
LIMA1-205ENST00000550592 ASAH1Q13510 395 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 TPSAB1Q15661 275 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 TPD52L1Q16890 204 aaPredicted RBP3.67□□□□□ -1.82
LIMA1-205ENST00000550592 PAN3Q58A45 887 aaKnown RBP3.67□□□□□ -1.82
LIMA1-205ENST00000550592 UTF1Q5T230 341 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 SLC22A10Q63ZE4 541 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 OR8G2PQ6IF36 304 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 PAMR1Q6UXH9 720 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 Q6ZR54 194 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 P2RY8Q86VZ1 359 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 SERPINA9Q86WD7 417 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 TMEM17Q86X19 198 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 MYOCDQ8IZQ8 938 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 CCDC26Q8TAB7 109 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 CNIH3Q8TBE1 160 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 SDSLQ96GA7 329 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 C12orf42Q96LP6 360 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 SIGLEC12Q96PQ1 595 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 OR5M11Q96RB7 305 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 ERP44Q9BS26 406 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 RMND5AQ9H871 391 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 MEAF6Q9HAF1 191 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 PNO1Q9NRX1 252 aaKnown RBP3.67□□□□□ -1.82
LIMA1-205ENST00000550592 RSPH14Q9UHP6 348 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 SAMD4AQ9UPU9 718 aaKnown RBP3.67□□□□□ -1.82
LIMA1-205ENST00000550592 SPEGQ15772 3267 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 IGSF10Q6WRI0 2623 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 MROH5Q6ZUA9 1318 aa3.67□□□□□ -1.82
LIMA1-205ENST00000550592 ACACAQ13085 2346 aa3.66□□□□□ -1.82
LIMA1-205ENST00000550592 OR6C65A6NJZ3 312 aa3.66□□□□□ -1.82
LIMA1-205ENST00000550592 E9PLD3 99 aa3.66□□□□□ -1.82
LIMA1-205ENST00000550592 ZSCAN12O43309 604 aa3.66□□□□□ -1.82
LIMA1-205ENST00000550592 SRSF10O75494 262 aaKnown RBP3.66□□□□□ -1.82
LIMA1-205ENST00000550592 CD55P08174 381 aa3.66□□□□□ -1.82
LIMA1-205ENST00000550592 ATP6V1C1P21283 382 aa3.66□□□□□ -1.82
LIMA1-205ENST00000550592 TBXA2RP21731 343 aa3.66□□□□□ -1.82
LIMA1-205ENST00000550592 PSMA5P28066 241 aa3.66□□□□□ -1.82
LIMA1-205ENST00000550592 TAF6P49848 677 aa3.66□□□□□ -1.82
LIMA1-205ENST00000550592 VLDLRP98155 873 aa3.66□□□□□ -1.82
LIMA1-205ENST00000550592 CD47Q08722 323 aa3.66□□□□□ -1.82
LIMA1-205ENST00000550592 RIPPLY1Q0D2K3 151 aa3.66□□□□□ -1.82
LIMA1-205ENST00000550592 SERTAD2Q14140 314 aa3.66□□□□□ -1.82
LIMA1-205ENST00000550592 SELPLGQ14242 412 aa3.66□□□□□ -1.82
LIMA1-205ENST00000550592 PDK4Q16654 411 aa3.66□□□□□ -1.82
LIMA1-205ENST00000550592 QRICH1Q2TAL8 776 aa3.66□□□□□ -1.82
LIMA1-205ENST00000550592 GLYR1Q49A26 553 aaPredicted RBP3.66□□□□□ -1.82
LIMA1-205ENST00000550592 UFSP1Q6NVU6 142 aa3.66□□□□□ -1.82
LIMA1-205ENST00000550592 BLOC1S2Q6QNY1 142 aa3.66□□□□□ -1.82
LIMA1-205ENST00000550592 GPR137CQ8N3F9 429 aa3.66□□□□□ -1.82
LIMA1-205ENST00000550592 PNPT1Q8TCS8 783 aaKnown RBP3.66□□□□□ -1.82
LIMA1-205ENST00000550592 AENQ8WTP8 325 aaKnown RBP3.66□□□□□ -1.82
LIMA1-205ENST00000550592 TRIM44Q96DX7 344 aaPredicted RBP3.66□□□□□ -1.82
LIMA1-205ENST00000550592 DUSP16Q9BY84 665 aa3.66□□□□□ -1.82
LIMA1-205ENST00000550592 AATFQ9NY61 560 aaKnown RBP eCLIP3.66□□□□□ -1.82
LIMA1-205ENST00000550592 TMCC3Q9ULS5 477 aa3.66□□□□□ -1.82
LIMA1-205ENST00000550592 OR10H1Q9Y4A9 318 aa3.66□□□□□ -1.82
LIMA1-205ENST00000550592 URB1O60287 2271 aaKnown RBP3.66□□□□□ -1.82
LIMA1-205ENST00000550592 HCFC1P51610 2035 aa3.66□□□□□ -1.82
LIMA1-205ENST00000550592 PTPRSQ13332 1948 aa3.66□□□□□ -1.82
LIMA1-205ENST00000550592 DSPP15924 2871 aaKnown RBP3.65□□□□□ -1.82
LIMA1-205ENST00000550592 PTPRQQ9UMZ3 2332 aa3.65□□□□□ -1.82
LIMA1-205ENST00000550592 MICAL3Q7RTP6 2002 aa3.65□□□□□ -1.82
LIMA1-205ENST00000550592 CDX4O14627 284 aaPredicted RBP3.65□□□□□ -1.83
LIMA1-205ENST00000550592 BCAS1O75363 584 aaPredicted RBP3.65□□□□□ -1.83
LIMA1-205ENST00000550592 SCRG1O75711 98 aa3.65□□□□□ -1.83
LIMA1-205ENST00000550592 TM7SF2O76062 418 aa3.65□□□□□ -1.83
LIMA1-205ENST00000550592 DCNP07585 359 aaKnown RBP3.65□□□□□ -1.83
LIMA1-205ENST00000550592 CPN1P15169 458 aa3.65□□□□□ -1.83
LIMA1-205ENST00000550592 HOXB8P17481 243 aaPredicted RBP3.65□□□□□ -1.83
LIMA1-205ENST00000550592 PAX7P23759 505 aa3.65□□□□□ -1.83
LIMA1-205ENST00000550592 PTBP1P26599 531 aaKnown RBP eCLIP3.65□□□□□ -1.83
LIMA1-205ENST00000550592 GDF1P27539 372 aa3.65□□□□□ -1.83
LIMA1-205ENST00000550592 IL2RGP31785 369 aa3.65□□□□□ -1.83
LIMA1-205ENST00000550592 CHI3L1P36222 383 aaPredicted RBP3.65□□□□□ -1.83
LIMA1-205ENST00000550592 MDH2P40926 338 aaKnown RBP3.65□□□□□ -1.83
LIMA1-205ENST00000550592 PLA2G16P53816 162 aa3.65□□□□□ -1.83
LIMA1-205ENST00000550592 PJVKQ0ZLH3 352 aa3.65□□□□□ -1.83
LIMA1-205ENST00000550592 ANKDD1AQ495B1 522 aa3.65□□□□□ -1.83
LIMA1-205ENST00000550592 MARC1Q5VT66 337 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms