RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 CIB4A0PJX0 185 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 TMEM72A0PK05 275 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 CCT8L1PA6NM43 557 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 HMGN4O00479 90 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 BIRC5O15392 142 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 SSX4O60224 188 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 AGR2O95994 175 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 MYZAPP0CAP1 466 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 DHRS4L1P0CG22 281 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 LBPP18428 481 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 BGNP21810 368 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 CD40P25942 277 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 CALRP27797 417 aaKnown RBP7.44□□□□□ -1.22
USP28-215ENST00000545608 S100A3P33764 101 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 TTKP33981 857 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 SLC1A6P48664 564 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 RPL14P50914 215 aaKnown RBP7.44□□□□□ -1.22
USP28-215ENST00000545608 ZNF83P51522 516 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 SLC16A1P53985 500 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 NME5P56597 212 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 UFM1P61960 85 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 IRX1P78414 480 aaPredicted RBP7.44□□□□□ -1.22
USP28-215ENST00000545608 H3F3AP84243 136 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 SPOCK1Q08629 439 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 GABRA6Q16445 453 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 SYPL1Q16563 259 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 GPAT3Q53EU6 434 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 AGAP6Q5VW22 663 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 C11orf71Q6IPW1 123 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 B3GLCTQ6Y288 498 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 CXXC5Q7LFL8 322 aaKnown RBP7.44□□□□□ -1.22
USP28-215ENST00000545608 RNF130Q86XS8 419 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 C10orf67Q8IYJ2 551 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 UBE2J2Q8N2K1 259 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 ARFGAP2Q8N6H7 521 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 ANKFN1Q8N957 763 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 WDR31Q8NA23 367 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 VPS37AQ8NEZ2 397 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 OR52E4Q8NGH9 312 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 OIT3Q8WWZ8 545 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 TESCQ96BS2 214 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 ZBTB9Q96C00 473 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 ZHX1-C8orf76Q96EF9 292 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 HS6ST2Q96MM7 605 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 MUS81Q96NY9 551 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 SLC35A5Q9BS91 424 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 C1QTNF6Q9BXI9 259 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 NUF2Q9BZD4 464 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 SLC38A1Q9H2H9 487 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 MED4Q9NPJ6 270 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 EXOSC3Q9NQT5 275 aaKnown RBP7.44□□□□□ -1.22
USP28-215ENST00000545608 YAE1D1Q9NRH1 226 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 PNPOQ9NVS9 261 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 EMC3Q9P0I2 261 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 TMEM181Q9P2C4 612 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 MARCOQ9UEW3 520 aaPredicted RBP7.44□□□□□ -1.22
USP28-215ENST00000545608 OSGIN1Q9UJX0 560 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 HDGFL3Q9Y3E1 203 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 SPIN1Q9Y657 262 aaPredicted RBP7.44□□□□□ -1.22
USP28-215ENST00000545608 ABCA1O95477 2261 aa7.44□□□□□ -1.22
USP28-215ENST00000545608 IGHV4-30-2A0A087WSY4 118 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 A0A096LNT2 108 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 TMED7-TICAM2A0A0A6YYA0 188 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 ZC3H12DA2A288 527 aaKnown RBP7.43□□□□□ -1.22
USP28-215ENST00000545608 CCDC154A6NI56 674 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 E9PBE3 544 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 M0R1B8 84 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 PDLIM1O00151 329 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 GPR171O14626 319 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 DNPH1O43598 174 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 CD5LO43866 347 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 GPRIN2O60269 458 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 MRPL33O75394 65 aaKnown RBP7.43□□□□□ -1.22
USP28-215ENST00000545608 TP53P04637 393 aaPredicted RBP7.43□□□□□ -1.22
USP28-215ENST00000545608 CHRM4P08173 479 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 ITGA5P08648 1049 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 ALDOCP09972 364 aaKnown RBP7.43□□□□□ -1.22
USP28-215ENST00000545608 PTAFRP25105 342 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 FKBP2P26885 142 aaKnown RBP7.43□□□□□ -1.22
USP28-215ENST00000545608 IL12AP29459 219 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 CHI3L1P36222 383 aaPredicted RBP7.43□□□□□ -1.22
USP28-215ENST00000545608 CDKN2CP42773 168 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 MAGEA8P43361 318 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 GIPRP48546 466 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 CLK1P49759 484 aaKnown RBP7.43□□□□□ -1.22
USP28-215ENST00000545608 KHKP50053 298 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 KRT71Q3SY84 523 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 FAM174BQ3ZCQ3 159 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 TSPO2Q5TGU0 170 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 C9orf135Q5VTT2 229 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 SLC22A25Q6T423 547 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 TMEM108Q6UXF1 575 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 SSX8Q7RTT4 187 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 OR10H5Q8NGA6 315 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 SPATA3Q8NHX4 192 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 PIGXQ8TBF5 258 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 HTRA1Q92743 480 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 RADILQ96JH8 1075 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 CCDC115Q96NT0 180 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 DHRS9Q9BPW9 319 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms