RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 ATG4DQ86TL0 474 aaPredicted RBP11.56□□□□□ -0.56
RTN3-213ENST00000543552 CCDC103Q8IW40 242 aa11.56□□□□□ -0.56
RTN3-213ENST00000543552 OR52N5Q8NH56 324 aa11.56□□□□□ -0.56
RTN3-213ENST00000543552 MGARPQ8TDB4 240 aa11.56□□□□□ -0.56
RTN3-213ENST00000543552 NEUROG1Q92886 237 aa11.56□□□□□ -0.56
RTN3-213ENST00000543552 ITCHQ96J02 903 aa11.56□□□□□ -0.56
RTN3-213ENST00000543552 SF3B5Q9BWJ5 86 aaKnown RBP11.56□□□□□ -0.56
RTN3-213ENST00000543552 SLCO5A1Q9H2Y9 848 aa11.56□□□□□ -0.56
RTN3-213ENST00000543552 PIF1Q9H611 641 aa11.56□□□□□ -0.56
RTN3-213ENST00000543552 NPAP1Q9NZP6 1156 aa11.56□□□□□ -0.56
RTN3-213ENST00000543552 ZIM2Q9NZV7 527 aa11.56□□□□□ -0.56
RTN3-213ENST00000543552 ZNF232Q9UNY5 417 aa11.56□□□□□ -0.56
RTN3-213ENST00000543552 AMDHD2Q9Y303 409 aa11.56□□□□□ -0.56
RTN3-213ENST00000543552 CADP27708 2225 aa11.55□□□□□ -0.56
RTN3-213ENST00000543552 DNHD1Q96M86 4753 aa11.55□□□□□ -0.56
RTN3-213ENST00000543552 A0A096LPI6 279 aa11.55□□□□□ -0.56
RTN3-213ENST00000543552 TMEM72A0PK05 275 aa11.55□□□□□ -0.56
RTN3-213ENST00000543552 CDHR4A6H8M9 788 aa11.55□□□□□ -0.56
RTN3-213ENST00000543552 RNF223E7ERA6 249 aa11.55□□□□□ -0.56
RTN3-213ENST00000543552 RAMP1O60894 148 aa11.55□□□□□ -0.56
RTN3-213ENST00000543552 ADAM11O75078 769 aa11.55□□□□□ -0.56
RTN3-213ENST00000543552 ERLIN1O75477 346 aa11.55□□□□□ -0.56
RTN3-213ENST00000543552 THBS1P07996 1170 aa11.55□□□□□ -0.56
RTN3-213ENST00000543552 ZCCHC18P0CG32 403 aa11.55□□□□□ -0.56
RTN3-213ENST00000543552 CD40P25942 277 aa11.55□□□□□ -0.56
RTN3-213ENST00000543552 ZNF83P51522 516 aa11.55□□□□□ -0.56
RTN3-213ENST00000543552 WDR4P57081 412 aaKnown RBP11.55□□□□□ -0.56
RTN3-213ENST00000543552 DSTNP60981 165 aa11.55□□□□□ -0.56
RTN3-213ENST00000543552 PLAURQ03405 335 aa11.55□□□□□ -0.56
RTN3-213ENST00000543552 SLC17A1Q14916 467 aa11.55□□□□□ -0.56
RTN3-213ENST00000543552 COX20Q5RI15 118 aa11.55□□□□□ -0.56
RTN3-213ENST00000543552 OTUD3Q5T2D3 398 aaPredicted RBP11.55□□□□□ -0.56
RTN3-213ENST00000543552 WBP2NLQ6ICG8 309 aa11.55□□□□□ -0.56
RTN3-213ENST00000543552 FBXL14Q8N1E6 418 aa11.55□□□□□ -0.56
RTN3-213ENST00000543552 POMGNT2Q8NAT1 580 aa11.55□□□□□ -0.56
RTN3-213ENST00000543552 OR52P1PQ8NH57 321 aa11.55□□□□□ -0.56
RTN3-213ENST00000543552 TMEM45BQ96B21 275 aa11.55□□□□□ -0.56
RTN3-213ENST00000543552 DNAJA3Q96EY1 480 aa11.55□□□□□ -0.56
RTN3-213ENST00000543552 MAELQ96JY0 434 aaKnown RBP11.55□□□□□ -0.56
RTN3-213ENST00000543552 MUS81Q96NY9 551 aa11.55□□□□□ -0.56
RTN3-213ENST00000543552 DHRS9Q9BPW9 319 aa11.55□□□□□ -0.56
RTN3-213ENST00000543552 TAPBPLQ9BX59 468 aa11.55□□□□□ -0.56
RTN3-213ENST00000543552 REG4Q9BYZ8 158 aa11.55□□□□□ -0.56
RTN3-213ENST00000543552 ADAM19Q9H013 955 aa11.55□□□□□ -0.56
RTN3-213ENST00000543552 RAD21L1Q9H4I0 556 aa11.55□□□□□ -0.56
RTN3-213ENST00000543552 MANSC1Q9H8J5 431 aa11.55□□□□□ -0.56
RTN3-213ENST00000543552 FKRPQ9H9S5 495 aa11.55□□□□□ -0.56
RTN3-213ENST00000543552 SDR39U1Q9NRG7 319 aaPredicted RBP11.55□□□□□ -0.56
RTN3-213ENST00000543552 FLVCR1Q9Y5Y0 555 aa11.55□□□□□ -0.56
RTN3-213ENST00000543552 SLC25A15Q9Y619 301 aa11.55□□□□□ -0.56
RTN3-213ENST00000543552 DSPPQ9NZW4 1301 aa11.55□□□□□ -0.56
RTN3-213ENST00000543552 OR6C65A6NJZ3 312 aa11.54□□□□□ -0.56
RTN3-213ENST00000543552 A8MVM7 634 aa11.54□□□□□ -0.56
RTN3-213ENST00000543552 M0R1B8 84 aa11.54□□□□□ -0.56
RTN3-213ENST00000543552 UBDO15205 165 aa11.54□□□□□ -0.56
RTN3-213ENST00000543552 VAMP5O95183 116 aa11.54□□□□□ -0.56
RTN3-213ENST00000543552 WNT11O96014 354 aa11.54□□□□□ -0.56
RTN3-213ENST00000543552 IGHV4-39P01824 125 aa11.54□□□□□ -0.56
RTN3-213ENST00000543552 BCHEP06276 602 aa11.54□□□□□ -0.56
RTN3-213ENST00000543552 IMPDH2P12268 514 aa11.54□□□□□ -0.56
RTN3-213ENST00000543552 NCF2P19878 526 aaPredicted RBP11.54□□□□□ -0.56
RTN3-213ENST00000543552 PAX7P23759 505 aa11.54□□□□□ -0.56
RTN3-213ENST00000543552 ACVR1BP36896 505 aa11.54□□□□□ -0.56
RTN3-213ENST00000543552 DSCR9P59020 149 aa11.54□□□□□ -0.56
RTN3-213ENST00000543552 GABRA6Q16445 453 aa11.54□□□□□ -0.56
RTN3-213ENST00000543552 C6orf10Q5SRN2 563 aa11.54□□□□□ -0.56
RTN3-213ENST00000543552 ZNF544Q6NX49 715 aa11.54□□□□□ -0.56
RTN3-213ENST00000543552 MIER2Q8N344 545 aa11.54□□□□□ -0.56
RTN3-213ENST00000543552 CADM2Q8N3J6 435 aa11.54□□□□□ -0.56
RTN3-213ENST00000543552 AMBRA1Q9C0C7 1298 aa11.54□□□□□ -0.56
RTN3-213ENST00000543552 TPT1P8Q9HAU6 139 aa11.54□□□□□ -0.56
RTN3-213ENST00000543552 CBLN4Q9NTU7 201 aa11.54□□□□□ -0.56
RTN3-213ENST00000543552 ZNF443Q9Y2A4 671 aaPredicted RBP11.54□□□□□ -0.56
RTN3-213ENST00000543552 IFT52Q9Y366 437 aa11.54□□□□□ -0.56
RTN3-213ENST00000543552 A0A0G2JPF8 293 aa11.53□□□□□ -0.56
RTN3-213ENST00000543552 LIPT2A6NK58 231 aa11.53□□□□□ -0.56
RTN3-213ENST00000543552 AQP7P3A6NL99 342 aa11.53□□□□□ -0.56
RTN3-213ENST00000543552 HNRNPCL2B2RXH8 293 aa11.53□□□□□ -0.56
RTN3-213ENST00000543552 HNRNPCL3B7ZW38 293 aa11.53□□□□□ -0.56
RTN3-213ENST00000543552 PDLIM1O00151 329 aa11.53□□□□□ -0.56
RTN3-213ENST00000543552 TLX2O43763 284 aaPredicted RBP11.53□□□□□ -0.56
RTN3-213ENST00000543552 HNRNPCL1O60812 293 aaKnown RBP11.53□□□□□ -0.56
RTN3-213ENST00000543552 KRT33AO76009 404 aa11.53□□□□□ -0.56
RTN3-213ENST00000543552 CD8AP01732 235 aa11.53□□□□□ -0.56
RTN3-213ENST00000543552 ITGA5P08648 1049 aa11.53□□□□□ -0.56
RTN3-213ENST00000543552 HNRNPCL4P0DMR1 293 aa11.53□□□□□ -0.56
RTN3-213ENST00000543552 ETFAP13804 333 aa11.53□□□□□ -0.56
RTN3-213ENST00000543552 MPGP29372 298 aa11.53□□□□□ -0.56
RTN3-213ENST00000543552 TTKP33981 857 aa11.53□□□□□ -0.56
RTN3-213ENST00000543552 POLR2JP52435 117 aaKnown RBP11.53□□□□□ -0.56
RTN3-213ENST00000543552 NUDT6P53370 316 aa11.53□□□□□ -0.56
RTN3-213ENST00000543552 PRPS1P60891 318 aa11.53□□□□□ -0.56
RTN3-213ENST00000543552 STX1BP61266 288 aa11.53□□□□□ -0.56
RTN3-213ENST00000543552 MAGOHP61326 146 aaKnown RBP11.53□□□□□ -0.56
RTN3-213ENST00000543552 CEACAM7Q14002 265 aa11.53□□□□□ -0.56
RTN3-213ENST00000543552 OR7A5Q15622 319 aa11.53□□□□□ -0.56
RTN3-213ENST00000543552 PRAMEF8Q5VWM4 474 aa11.53□□□□□ -0.56
RTN3-213ENST00000543552 PRAMEF7Q5VXH5 474 aa11.53□□□□□ -0.56
RTN3-213ENST00000543552 CLEC2AQ6UVW9 174 aa11.53□□□□□ -0.56
RTN3-213ENST00000543552 ZNF836Q6ZNA1 936 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms