RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 FAM234BA2RU67 622 aa12.96□□□□□ -0.33
VPS28-215ENST00000531924 SLCO1B7G3V0H7 640 aa12.96□□□□□ -0.33
VPS28-215ENST00000531924 NDUFS7O75251 213 aa12.96□□□□□ -0.33
VPS28-215ENST00000531924 SLC22A3O75751 556 aa12.96□□□□□ -0.33
VPS28-215ENST00000531924 CD8AP01732 235 aa12.96□□□□□ -0.33
VPS28-215ENST00000531924 IL6P05231 212 aa12.96□□□□□ -0.33
VPS28-215ENST00000531924 GPIP06744 558 aa12.96□□□□□ -0.33
VPS28-215ENST00000531924 IDO1P14902 403 aa12.96□□□□□ -0.33
VPS28-215ENST00000531924 NCF2P19878 526 aaPredicted RBP12.96□□□□□ -0.33
VPS28-215ENST00000531924 EPHA3P29320 983 aa12.96□□□□□ -0.33
VPS28-215ENST00000531924 TTKP33981 857 aa12.96□□□□□ -0.33
VPS28-215ENST00000531924 CDKN2CP42773 168 aa12.96□□□□□ -0.33
VPS28-215ENST00000531924 CRATP43155 626 aa12.96□□□□□ -0.33
VPS28-215ENST00000531924 DSCR9P59020 149 aa12.96□□□□□ -0.33
VPS28-215ENST00000531924 RAB35Q15286 201 aa12.96□□□□□ -0.33
VPS28-215ENST00000531924 GABRA6Q16445 453 aa12.96□□□□□ -0.33
VPS28-215ENST00000531924 COX20Q5RI15 118 aa12.96□□□□□ -0.33
VPS28-215ENST00000531924 OTUD3Q5T2D3 398 aaPredicted RBP12.96□□□□□ -0.33
VPS28-215ENST00000531924 ATG16L1Q676U5 607 aa12.96□□□□□ -0.33
VPS28-215ENST00000531924 PAQR6Q6TCH4 344 aa12.96□□□□□ -0.33
VPS28-215ENST00000531924 CLEC2AQ6UVW9 174 aa12.96□□□□□ -0.33
VPS28-215ENST00000531924 GPAT4Q86UL3 456 aa12.96□□□□□ -0.33
VPS28-215ENST00000531924 MUC15Q8N387 334 aa12.96□□□□□ -0.33
VPS28-215ENST00000531924 OR52E4Q8NGH9 312 aa12.96□□□□□ -0.33
VPS28-215ENST00000531924 OR52P1PQ8NH57 321 aa12.96□□□□□ -0.33
VPS28-215ENST00000531924 MUS81Q96NY9 551 aa12.96□□□□□ -0.33
VPS28-215ENST00000531924 TAPBPLQ9BX59 468 aa12.96□□□□□ -0.33
VPS28-215ENST00000531924 ARMC7Q9H6L4 198 aa12.96□□□□□ -0.33
VPS28-215ENST00000531924 RMND5AQ9H871 391 aa12.96□□□□□ -0.33
VPS28-215ENST00000531924 CBLN4Q9NTU7 201 aa12.96□□□□□ -0.33
VPS28-215ENST00000531924 ZNF232Q9UNY5 417 aa12.96□□□□□ -0.33
VPS28-215ENST00000531924 AMDHD2Q9Y303 409 aa12.96□□□□□ -0.33
VPS28-215ENST00000531924 GPR45Q9Y5Y3 372 aa12.96□□□□□ -0.33
VPS28-215ENST00000531924 E7EQL1 145 aa12.95□□□□□ -0.34
VPS28-215ENST00000531924 FAAHO00519 579 aa12.95□□□□□ -0.34
VPS28-215ENST00000531924 TLX2O43763 284 aaPredicted RBP12.95□□□□□ -0.34
VPS28-215ENST00000531924 WNT11O96014 354 aa12.95□□□□□ -0.34
VPS28-215ENST00000531924 C1QCP02747 245 aa12.95□□□□□ -0.34
VPS28-215ENST00000531924 IMPDH2P12268 514 aa12.95□□□□□ -0.34
VPS28-215ENST00000531924 CDH2P19022 906 aaPredicted RBP12.95□□□□□ -0.34
VPS28-215ENST00000531924 IL12AP29459 219 aa12.95□□□□□ -0.34
VPS28-215ENST00000531924 CRISP3P54108 245 aa12.95□□□□□ -0.34
VPS28-215ENST00000531924 PRPS1P60891 318 aa12.95□□□□□ -0.34
VPS28-215ENST00000531924 H3F3AP84243 136 aa12.95□□□□□ -0.34
VPS28-215ENST00000531924 CHRNB3Q05901 458 aa12.95□□□□□ -0.34
VPS28-215ENST00000531924 EPS8Q12929 822 aa12.95□□□□□ -0.34
VPS28-215ENST00000531924 CEACAM7Q14002 265 aa12.95□□□□□ -0.34
VPS28-215ENST00000531924 LARS2Q15031 903 aaKnown RBP12.95□□□□□ -0.34
VPS28-215ENST00000531924 OR7A5Q15622 319 aa12.95□□□□□ -0.34
VPS28-215ENST00000531924 ZSWIM7Q19AV6 140 aa12.95□□□□□ -0.34
VPS28-215ENST00000531924 LIN52Q52LA3 116 aa12.95□□□□□ -0.34
VPS28-215ENST00000531924 TMEM225Q6GV28 225 aa12.95□□□□□ -0.34
VPS28-215ENST00000531924 AAED1Q7RTV5 226 aa12.95□□□□□ -0.34
VPS28-215ENST00000531924 ABHD12BQ7Z5M8 362 aaPredicted RBP12.95□□□□□ -0.34
VPS28-215ENST00000531924 C17orf78Q8N4C9 275 aa12.95□□□□□ -0.34
VPS28-215ENST00000531924 C1orf162Q8NEQ5 155 aaPredicted RBP12.95□□□□□ -0.34
VPS28-215ENST00000531924 MDFIQ99750 246 aa12.95□□□□□ -0.34
VPS28-215ENST00000531924 SLC7A10Q9NS82 523 aa12.95□□□□□ -0.34
VPS28-215ENST00000531924 ADPRHL2Q9NX46 363 aa12.95□□□□□ -0.34
VPS28-215ENST00000531924 NKIRAS1Q9NYS0 192 aa12.95□□□□□ -0.34
VPS28-215ENST00000531924 DCTN4Q9UJW0 460 aa12.95□□□□□ -0.34
VPS28-215ENST00000531924 FLVCR1Q9Y5Y0 555 aa12.95□□□□□ -0.34
VPS28-215ENST00000531924 PRR14LQ5THK1 2151 aa12.94□□□□□ -0.34
VPS28-215ENST00000531924 TMEM120BA0PK00 339 aa12.94□□□□□ -0.34
VPS28-215ENST00000531924 ZC3H12DA2A288 527 aaKnown RBP12.94□□□□□ -0.34
VPS28-215ENST00000531924 CD5LO43866 347 aa12.94□□□□□ -0.34
VPS28-215ENST00000531924 AKR7A3O95154 331 aa12.94□□□□□ -0.34
VPS28-215ENST00000531924 IFNA2P01563 188 aa12.94□□□□□ -0.34
VPS28-215ENST00000531924 ITGA5P08648 1049 aa12.94□□□□□ -0.34
VPS28-215ENST00000531924 GKN3PP0CG01 181 aa12.94□□□□□ -0.34
VPS28-215ENST00000531924 MPGP29372 298 aa12.94□□□□□ -0.34
VPS28-215ENST00000531924 NTF4P34130 210 aa12.94□□□□□ -0.34
VPS28-215ENST00000531924 DSTNP60981 165 aa12.94□□□□□ -0.34
VPS28-215ENST00000531924 SPOCK1Q08629 439 aa12.94□□□□□ -0.34
VPS28-215ENST00000531924 SLC17A1Q14916 467 aa12.94□□□□□ -0.34
VPS28-215ENST00000531924 PDCD4Q53EL6 469 aaKnown RBP12.94□□□□□ -0.34
VPS28-215ENST00000531924 C6orf10Q5SRN2 563 aa12.94□□□□□ -0.34
VPS28-215ENST00000531924 TSPO2Q5TGU0 170 aa12.94□□□□□ -0.34
VPS28-215ENST00000531924 WBP2NLQ6ICG8 309 aa12.94□□□□□ -0.34
VPS28-215ENST00000531924 ZNF544Q6NX49 715 aa12.94□□□□□ -0.34
VPS28-215ENST00000531924 POMGNT2Q8NAT1 580 aa12.94□□□□□ -0.34
VPS28-215ENST00000531924 OR9K2Q8NGE7 335 aa12.94□□□□□ -0.34
VPS28-215ENST00000531924 ITCHQ96J02 903 aa12.94□□□□□ -0.34
VPS28-215ENST00000531924 KCNS3Q9BQ31 491 aa12.94□□□□□ -0.34
VPS28-215ENST00000531924 SF3B5Q9BWJ5 86 aaKnown RBP12.94□□□□□ -0.34
VPS28-215ENST00000531924 SLC17A5Q9NRA2 495 aa12.94□□□□□ -0.34
VPS28-215ENST00000531924 RLIMQ9NVW2 624 aa12.94□□□□□ -0.34
VPS28-215ENST00000531924 PRDM4Q9UKN5 801 aa12.94□□□□□ -0.34
VPS28-215ENST00000531924 PMF1-BGLAPU3KQ54 211 aa12.94□□□□□ -0.34
VPS28-215ENST00000531924 DNHD1Q96M86 4753 aa12.94□□□□□ -0.34
VPS28-215ENST00000531924 FREM1Q5H8C1 2179 aa12.94□□□□□ -0.34
VPS28-215ENST00000531924 CDHR4A6H8M9 788 aa12.93□□□□□ -0.34
VPS28-215ENST00000531924 LIPT2A6NK58 231 aa12.93□□□□□ -0.34
VPS28-215ENST00000531924 A8MVM7 634 aa12.93□□□□□ -0.34
VPS28-215ENST00000531924 BCHEP06276 602 aa12.93□□□□□ -0.34
VPS28-215ENST00000531924 ETFAP13804 333 aa12.93□□□□□ -0.34
VPS28-215ENST00000531924 RPS4Y1P22090 263 aaKnown RBP12.93□□□□□ -0.34
VPS28-215ENST00000531924 FOXG1P55316 489 aaPredicted RBP12.93□□□□□ -0.34
VPS28-215ENST00000531924 IRX1P78414 480 aaPredicted RBP12.93□□□□□ -0.34
VPS28-215ENST00000531924 PLAURQ03405 335 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms