RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	GRID2	O43424	1007 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	SNN	O75324	88 aa	Predicted RBP	5.12	□□□□□ -1.59
CD44-231	ENST00000531110	ECI2	O75521	394 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	RECQL5	O94762	991 aa	Predicted RBP	5.12	□□□□□ -1.59
CD44-231	ENST00000531110	ATG12	O94817	140 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	NDUFB8	O95169	186 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	CTDNEP1	O95476	244 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	AP2A1	O95782	977 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	SERPINA1	P01009	418 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	MMP1	P03956	469 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	CLEC3B	P05452	202 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	C8G	P07360	202 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	STAG3L2	P0CL84	134 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	PSG1	P11464	419 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	GABRA1	P14867	456 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	SPN	P16150	400 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	NPR2	P20594	1047 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	HNRNPA2B1	P22626	353 aa	Known RBP	5.12	□□□□□ -1.59
CD44-231	ENST00000531110	CRHBP	P24387	322 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	GTF2E2	P29084	291 aa	Known RBP	5.12	□□□□□ -1.59
CD44-231	ENST00000531110	PTPN6	P29350	595 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	GNRHR	P30968	328 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	THPO	P40225	353 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	GLUD2	P49448	558 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	RORC	P51449	518 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	ERVS71-1	P61550	626 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	TWF1	Q12792	350 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	ELAVL2	Q12926	359 aa	Known RBP	5.12	□□□□□ -1.59
CD44-231	ENST00000531110	SRSF5	Q13243	272 aa	Known RBP	5.12	□□□□□ -1.59
CD44-231	ENST00000531110	GK3P	Q14409	553 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	GPR176	Q14439	515 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	GRB14	Q14449	540 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	FCN2	Q15485	313 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	OR8G1	Q15617	311 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	SNAPC1	Q16533	368 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	STEAP4	Q687X5	459 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	LEMD1	Q68G75	181 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	OR8G2P	Q6IF36	304 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	OR6B2	Q6IFH4	312 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	FAHD2B	Q6P2I3	314 aa	Predicted RBP	5.12	□□□□□ -1.59
CD44-231	ENST00000531110	GJB7	Q6PEY0	223 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	PLET1	Q6UQ28	207 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	PET117	Q6UWS5	81 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	TMEM107	Q6UX40	140 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	ISLR2	Q6UXK2	745 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	FAM151B	Q6UXP7	276 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	C17orf107	Q6ZR85	190 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	SLC46A3	Q7Z3Q1	461 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	GRINA	Q7Z429	371 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	NRARP	Q7Z6K4	114 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	RANBP3L	Q86VV4	465 aa	Predicted RBP	5.12	□□□□□ -1.59
CD44-231	ENST00000531110	CRLF3	Q8IUI8	442 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	MFSD6L	Q8IWD5	586 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	FAM89B	Q8N5H3	189 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	BANP	Q8N9N5	519 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	OR51D1	Q8NGF3	324 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	OR51L1	Q8NGJ5	315 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	OR8D4	Q8NGM9	314 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	OR5K1	Q8NHB7	308 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	FIBIN	Q8TAL6	211 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	ZNF431	Q8TF32	576 aa	Predicted RBP	5.12	□□□□□ -1.59
CD44-231	ENST00000531110	C16orf78	Q8WTQ4	265 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	FBXO32	Q969P5	355 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	SLAMF9	Q96A28	289 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	LGALS12	Q96DT0	336 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	ARSG	Q96EG1	525 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	AURKB	Q96GD4	344 aa	Predicted RBP	5.12	□□□□□ -1.59
CD44-231	ENST00000531110	FAHD2A	Q96GK7	314 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	SMIM8	Q96KF7	97 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	SLC38A2	Q96QD8	506 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	STAC	Q99469	402 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	MEIS3	Q99687	375 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	MAP3K3	Q99759	626 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	FUZ	Q9BT04	418 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	IFT27	Q9BW83	186 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	NAA50	Q9GZZ1	169 aa	Known RBP	5.12	□□□□□ -1.59
CD44-231	ENST00000531110	FAM49A	Q9H0Q0	323 aa	Predicted RBP	5.12	□□□□□ -1.59
CD44-231	ENST00000531110	POLR3F	Q9H1D9	316 aa	Predicted RBP	5.12	□□□□□ -1.59
CD44-231	ENST00000531110	PPIL3	Q9H2H8	161 aa	Known RBP	5.12	□□□□□ -1.59
CD44-231	ENST00000531110	CLMP	Q9H6B4	373 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	MAP6D1	Q9H9H5	199 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	TMEM138	Q9NPI0	162 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	ENTPD7	Q9NQZ7	604 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	RRP7BP	Q9NSQ0	103 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	SMPD3	Q9NY59	655 aa	Predicted RBP	5.12	□□□□□ -1.59
CD44-231	ENST00000531110	COQ3	Q9NZJ6	369 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	UPB1	Q9UBR1	384 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	OPN4	Q9UHM6	478 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	ZNF490	Q9ULM2	529 aa	Predicted RBP	5.12	□□□□□ -1.59
CD44-231	ENST00000531110	NDRG2	Q9UN36	371 aa	Known RBP	5.12	□□□□□ -1.59
CD44-231	ENST00000531110	MMP24	Q9Y5R2	645 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	CHD5	Q8TDI0	1954 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	FAM205A	Q6ZU69	1335 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	NRK	Q7Z2Y5	1582 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	ALK	Q9UM73	1620 aa		5.12	□□□□□ -1.59
CD44-231	ENST00000531110	RGPD8	O14715	1765 aa	Predicted RBP	5.11	□□□□□ -1.59
CD44-231	ENST00000531110	RGPD5	Q99666	1765 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	TCRBV7S3A2	A0A539	114 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	C17orf102	A2RUQ5	167 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	C7orf66	A4D0T2	115 aa		5.11	□□□□□ -1.59

Retrieved 100 of 20,778 RNA–protein pairs in 30 ms