RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 CYB561A3Q8NBI2 242 aa18.84■□□□□ 0.61
VPS28-209ENST00000528142 OR51G2Q8NGK0 314 aa18.84■□□□□ 0.61
VPS28-209ENST00000528142 MOSPD2Q8NHP6 518 aa18.84■□□□□ 0.61
VPS28-209ENST00000528142 ELP5Q8TE02 316 aa18.84■□□□□ 0.61
VPS28-209ENST00000528142 TMCO6Q96DC7 493 aa18.84■□□□□ 0.61
VPS28-209ENST00000528142 ARHGAP9Q9BRR9 750 aa18.84■□□□□ 0.61
VPS28-209ENST00000528142 ERVK13-1Q9NX77 482 aa18.84■□□□□ 0.61
VPS28-209ENST00000528142 B3GALT1Q9Y5Z6 326 aa18.84■□□□□ 0.61
VPS28-209ENST00000528142 SLC22A31A6NKX4 558 aa18.83■□□□□ 0.6
VPS28-209ENST00000528142 C9J4A7 227 aa18.83■□□□□ 0.6
VPS28-209ENST00000528142 NUDT14O95848 222 aa18.83■□□□□ 0.6
VPS28-209ENST00000528142 ATP6V1E1P36543 226 aa18.83■□□□□ 0.6
VPS28-209ENST00000528142 BMXP51813 675 aa18.83■□□□□ 0.6
VPS28-209ENST00000528142 RPS3AP61247 264 aaKnown RBP18.83■□□□□ 0.6
VPS28-209ENST00000528142 KHDRBS1Q07666 443 aaKnown RBP eCLIP18.83■□□□□ 0.6
VPS28-209ENST00000528142 QPRTQ15274 297 aa18.83■□□□□ 0.6
VPS28-209ENST00000528142 KLHL12Q53G59 568 aa18.83■□□□□ 0.6
VPS28-209ENST00000528142 LINC00299Q6ZSB3 139 aa18.83■□□□□ 0.6
VPS28-209ENST00000528142 GALNT6Q8NCL4 622 aa18.83■□□□□ 0.6
VPS28-209ENST00000528142 OR52E2Q8NGJ4 325 aa18.83■□□□□ 0.6
VPS28-209ENST00000528142 GATAD2BQ8WXI9 593 aa18.83■□□□□ 0.6
VPS28-209ENST00000528142 TTC9Q92623 222 aa18.83■□□□□ 0.6
VPS28-209ENST00000528142 DACH2Q96NX9 599 aa18.83■□□□□ 0.6
VPS28-209ENST00000528142 SECISBP2Q96T21 854 aaKnown RBP18.83■□□□□ 0.6
VPS28-209ENST00000528142 DDOQ99489 341 aa18.83■□□□□ 0.6
VPS28-209ENST00000528142 OR51V1Q9H2C8 321 aa18.83■□□□□ 0.6
VPS28-209ENST00000528142 NANSQ9NR45 359 aa18.83■□□□□ 0.6
VPS28-209ENST00000528142 AKAP7Q9P0M2 348 aaPredicted RBP18.83■□□□□ 0.6
VPS28-209ENST00000528142 KLHL21Q9UJP4 597 aa18.83■□□□□ 0.6
VPS28-209ENST00000528142 FBXL4Q9UKA2 621 aa18.83■□□□□ 0.6
VPS28-209ENST00000528142 PTRH2Q9Y3E5 179 aaKnown RBP18.83■□□□□ 0.6
VPS28-209ENST00000528142 ADAM18Q9Y3Q7 739 aa18.83■□□□□ 0.6
VPS28-209ENST00000528142 CBFA2T3O75081 653 aa18.82■□□□□ 0.6
VPS28-209ENST00000528142 TSPAN19P0C672 248 aa18.82■□□□□ 0.6
VPS28-209ENST00000528142 CLUP10909 449 aa18.82■□□□□ 0.6
VPS28-209ENST00000528142 PAICSP22234 425 aaKnown RBP18.82■□□□□ 0.6
VPS28-209ENST00000528142 TGM1P22735 817 aa18.82■□□□□ 0.6
VPS28-209ENST00000528142 CXCR1P25024 350 aa18.82■□□□□ 0.6
VPS28-209ENST00000528142 RPL4P36578 427 aaKnown RBP18.82■□□□□ 0.6
VPS28-209ENST00000528142 CRYBB2P43320 205 aa18.82■□□□□ 0.6
VPS28-209ENST00000528142 COL28A1Q2UY09 1125 aa18.82■□□□□ 0.6
VPS28-209ENST00000528142 KBTBD8Q8NFY9 601 aa18.82■□□□□ 0.6
VPS28-209ENST00000528142 OR4K13Q8NH42 304 aa18.82■□□□□ 0.6
VPS28-209ENST00000528142 TAAR8Q969N4 342 aa18.82■□□□□ 0.6
VPS28-209ENST00000528142 HAO2Q9NYQ3 351 aa18.82■□□□□ 0.6
VPS28-209ENST00000528142 SEC14L4Q9UDX3 406 aa18.82■□□□□ 0.6
VPS28-209ENST00000528142 LOXL2Q9Y4K0 774 aa18.82■□□□□ 0.6
VPS28-209ENST00000528142 IGHV1-45A0A0A0MS14 117 aa18.81■□□□□ 0.6
VPS28-209ENST00000528142 B4DXG7 233 aa18.81■□□□□ 0.6
VPS28-209ENST00000528142 IDH3BO43837 385 aa18.81■□□□□ 0.6
VPS28-209ENST00000528142 AQP2P41181 271 aa18.81■□□□□ 0.6
VPS28-209ENST00000528142 TPBGQ13641 420 aa18.81■□□□□ 0.6
VPS28-209ENST00000528142 LIPKQ5VXJ0 399 aa18.81■□□□□ 0.6
VPS28-209ENST00000528142 GDPGP1Q6ZNW5 385 aa18.81■□□□□ 0.6
VPS28-209ENST00000528142 NAXDQ8IW45 347 aa18.81■□□□□ 0.6
VPS28-209ENST00000528142 C10orf53Q8N6V4 93 aa18.81■□□□□ 0.6
VPS28-209ENST00000528142 OR2Y1Q8NGV0 311 aa18.81■□□□□ 0.6
VPS28-209ENST00000528142 OR52N1Q8NH53 320 aa18.81■□□□□ 0.6
VPS28-209ENST00000528142 IMMP1LQ96LU5 166 aa18.81■□□□□ 0.6
VPS28-209ENST00000528142 ZNF700Q9H0M5 742 aa18.81■□□□□ 0.6
VPS28-209ENST00000528142 PLGRKTQ9HBL7 147 aa18.81■□□□□ 0.6
VPS28-209ENST00000528142 SPIN1Q9Y657 262 aaPredicted RBP18.81■□□□□ 0.6
VPS28-209ENST00000528142 CUL9Q8IWT3 2517 aa18.81■□□□□ 0.6
VPS28-209ENST00000528142 OR2J2O76002 312 aa18.81■□□□□ 0.6
VPS28-209ENST00000528142 DKK1O94907 266 aa18.81■□□□□ 0.6
VPS28-209ENST00000528142 PSMA1P25786 263 aaKnown RBP18.81■□□□□ 0.6
VPS28-209ENST00000528142 UQCRC1P31930 480 aa18.81■□□□□ 0.6
VPS28-209ENST00000528142 SERPINB10P48595 397 aa18.81■□□□□ 0.6
VPS28-209ENST00000528142 POLR2HP52434 150 aaKnown RBP18.81■□□□□ 0.6
VPS28-209ENST00000528142 C17orf67Q0P5P2 114 aa18.81■□□□□ 0.6
VPS28-209ENST00000528142 ANKDD1AQ495B1 522 aa18.81■□□□□ 0.6
VPS28-209ENST00000528142 DCAF12Q5T6F0 453 aa18.81■□□□□ 0.6
VPS28-209ENST00000528142 GRINAQ7Z429 371 aa18.81■□□□□ 0.6
VPS28-209ENST00000528142 ADCK1Q86TW2 530 aa18.81■□□□□ 0.6
VPS28-209ENST00000528142 ADGRG3Q86Y34 549 aa18.81■□□□□ 0.6
VPS28-209ENST00000528142 ACBD7Q8N6N7 88 aa18.81■□□□□ 0.6
VPS28-209ENST00000528142 FAM98AQ8NCA5 519 aaKnown RBP18.81■□□□□ 0.6
VPS28-209ENST00000528142 SDR9C7Q8NEX9 313 aa18.81■□□□□ 0.6
VPS28-209ENST00000528142 DEFB126Q9BYW3 111 aa18.81■□□□□ 0.6
VPS28-209ENST00000528142 TAS2R10Q9NYW0 307 aa18.81■□□□□ 0.6
VPS28-209ENST00000528142 ZNF229Q9UJW7 825 aa18.81■□□□□ 0.6
VPS28-209ENST00000528142 PCDHGB6Q9Y5F9 930 aa18.81■□□□□ 0.6
VPS28-209ENST00000528142 HS3ST3B1Q9Y662 390 aa18.81■□□□□ 0.6
VPS28-209ENST00000528142 BLOC1S5-TXNDC5H3BN57 136 aa18.8■□□□□ 0.6
VPS28-209ENST00000528142 NPIPB7O75200 414 aa18.8■□□□□ 0.6
VPS28-209ENST00000528142 BGLAPP02818 100 aa18.8■□□□□ 0.6
VPS28-209ENST00000528142 FBXO45P0C2W1 286 aa18.8■□□□□ 0.6
VPS28-209ENST00000528142 COX6A1P12074 109 aa18.8■□□□□ 0.6
VPS28-209ENST00000528142 ERVK-25P63136 954 aa18.8■□□□□ 0.6
VPS28-209ENST00000528142 ACSM1Q08AH1 577 aa18.8■□□□□ 0.6
VPS28-209ENST00000528142 BTBD16Q32M84 506 aa18.8■□□□□ 0.6
VPS28-209ENST00000528142 ZNF829Q3KNS6 432 aaPredicted RBP18.8■□□□□ 0.6
VPS28-209ENST00000528142 KLHL36Q8N4N3 616 aa18.8■□□□□ 0.6
VPS28-209ENST00000528142 TMEM99Q8N816 258 aa18.8■□□□□ 0.6
VPS28-209ENST00000528142 NPEPL1Q8NDH3 523 aa18.8■□□□□ 0.6
VPS28-209ENST00000528142 OR9Q1Q8NGQ5 310 aa18.8■□□□□ 0.6
VPS28-209ENST00000528142 TIMP4Q99727 224 aa18.8■□□□□ 0.6
VPS28-209ENST00000528142 EDEM2Q9BV94 578 aa18.8■□□□□ 0.6
VPS28-209ENST00000528142 KATNB1Q9BVA0 655 aa18.8■□□□□ 0.6
VPS28-209ENST00000528142 FKRPQ9H9S5 495 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms