RNA–Protein interactions for RNA: ENST00000522987.1

MRPS28-209, Transcript of mitochondrial ribosomal protein S28, humanhuman

TSL 3

Gene MRPS28, Length 487 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPS28-209ENST00000522987 VPS37AQ8NEZ2 397 aa13.51□□□□□ -0.25
MRPS28-209ENST00000522987 AENQ8WTP8 325 aaKnown RBP13.51□□□□□ -0.25
MRPS28-209ENST00000522987 WDR60Q8WVS4 1066 aa13.51□□□□□ -0.25
MRPS28-209ENST00000522987 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.51□□□□□ -0.25
MRPS28-209ENST00000522987 TESCQ96BS2 214 aa13.51□□□□□ -0.25
MRPS28-209ENST00000522987 C3orf49Q96BT1 292 aa13.51□□□□□ -0.25
MRPS28-209ENST00000522987 DDIT4LQ96D03 193 aa13.51□□□□□ -0.25
MRPS28-209ENST00000522987 TRIM44Q96DX7 344 aaPredicted RBP13.51□□□□□ -0.25
MRPS28-209ENST00000522987 MUS81Q96NY9 551 aa13.51□□□□□ -0.25
MRPS28-209ENST00000522987 PAIP2Q9BPZ3 127 aaKnown RBP13.51□□□□□ -0.25
MRPS28-209ENST00000522987 NAA11Q9BSU3 229 aaPredicted RBP13.51□□□□□ -0.25
MRPS28-209ENST00000522987 CENPHQ9H3R5 247 aa13.51□□□□□ -0.25
MRPS28-209ENST00000522987 RLIMQ9NVW2 624 aa13.51□□□□□ -0.25
MRPS28-209ENST00000522987 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.51□□□□□ -0.25
MRPS28-209ENST00000522987 CCDC154A6NI56 674 aa13.5□□□□□ -0.25
MRPS28-209ENST00000522987 PDLIM1O00151 329 aa13.5□□□□□ -0.25
MRPS28-209ENST00000522987 NR2F1P10589 423 aa13.5□□□□□ -0.25
MRPS28-209ENST00000522987 TUBA1BP68363 451 aa13.5□□□□□ -0.25
MRPS28-209ENST00000522987 TUBA4AP68366 448 aa13.5□□□□□ -0.25
MRPS28-209ENST00000522987 SLC35A1P78382 337 aa13.5□□□□□ -0.25
MRPS28-209ENST00000522987 SMU1Q2TAY7 513 aa13.5□□□□□ -0.25
MRPS28-209ENST00000522987 OR7E24Q6IFN5 339 aa13.5□□□□□ -0.25
MRPS28-209ENST00000522987 TUBA1AQ71U36 451 aa13.5□□□□□ -0.25
MRPS28-209ENST00000522987 AAED1Q7RTV5 226 aa13.5□□□□□ -0.25
MRPS28-209ENST00000522987 GPAT4Q86UL3 456 aa13.5□□□□□ -0.25
MRPS28-209ENST00000522987 VRK2Q86Y07 508 aa13.5□□□□□ -0.25
MRPS28-209ENST00000522987 CADM2Q8N3J6 435 aa13.5□□□□□ -0.25
MRPS28-209ENST00000522987 C10orf105Q8TEF2 133 aa13.5□□□□□ -0.25
MRPS28-209ENST00000522987 ZNF385AQ96PM9 386 aaKnown RBP13.5□□□□□ -0.25
MRPS28-209ENST00000522987 PANX1Q96RD7 426 aa13.5□□□□□ -0.25
MRPS28-209ENST00000522987 CHODLQ9H9P2 273 aa13.5□□□□□ -0.25
MRPS28-209ENST00000522987 KCNK9Q9NPC2 374 aa13.5□□□□□ -0.25
MRPS28-209ENST00000522987 EXOSC3Q9NQT5 275 aaKnown RBP13.5□□□□□ -0.25
MRPS28-209ENST00000522987 SLC9A8Q9Y2E8 581 aa13.5□□□□□ -0.25
MRPS28-209ENST00000522987 AGAP5A6NIR3 686 aa13.49□□□□□ -0.25
MRPS28-209ENST00000522987 RGS16O15492 202 aaPredicted RBP13.49□□□□□ -0.25
MRPS28-209ENST00000522987 IGHV4-31P0DP07 118 aa13.49□□□□□ -0.25
MRPS28-209ENST00000522987 IL7RP16871 459 aa13.49□□□□□ -0.25
MRPS28-209ENST00000522987 CLNS1AP54105 237 aaKnown RBP13.49□□□□□ -0.25
MRPS28-209ENST00000522987 H3F3AP84243 136 aa13.49□□□□□ -0.25
MRPS28-209ENST00000522987 EPS8Q12929 822 aa13.49□□□□□ -0.25
MRPS28-209ENST00000522987 MPP2Q14168 576 aa13.49□□□□□ -0.25
MRPS28-209ENST00000522987 GGTLC2Q14390 218 aa13.49□□□□□ -0.25
MRPS28-209ENST00000522987 SLC17A1Q14916 467 aa13.49□□□□□ -0.25
MRPS28-209ENST00000522987 VHLLQ6RSH7 139 aa13.49□□□□□ -0.25
MRPS28-209ENST00000522987 ANKS4BQ8N8V4 417 aa13.49□□□□□ -0.25
MRPS28-209ENST00000522987 AURKBQ96GD4 344 aaPredicted RBP13.49□□□□□ -0.25
MRPS28-209ENST00000522987 CCDC115Q96NT0 180 aa13.49□□□□□ -0.25
MRPS28-209ENST00000522987 OR52E6Q96RD3 313 aa13.49□□□□□ -0.25
MRPS28-209ENST00000522987 BEX2Q9BXY8 128 aa13.49□□□□□ -0.25
MRPS28-209ENST00000522987 FKRPQ9H9S5 495 aa13.49□□□□□ -0.25
MRPS28-209ENST00000522987 ADPRHL2Q9NX46 363 aa13.49□□□□□ -0.25
MRPS28-209ENST00000522987 TRAPPC4Q9Y296 219 aa13.49□□□□□ -0.25
MRPS28-209ENST00000522987 AMDHD2Q9Y303 409 aa13.49□□□□□ -0.25
MRPS28-209ENST00000522987 CFAP73A6NFT4 308 aa13.48□□□□□ -0.25
MRPS28-209ENST00000522987 ELOA3DA6NLF2 546 aaPredicted RBP13.48□□□□□ -0.25
MRPS28-209ENST00000522987 NR5A2O00482 541 aa13.48□□□□□ -0.25
MRPS28-209ENST00000522987 DNPH1O43598 174 aa13.48□□□□□ -0.25
MRPS28-209ENST00000522987 KRT33AO76009 404 aa13.48□□□□□ -0.25
MRPS28-209ENST00000522987 LGI1O95970 557 aa13.48□□□□□ -0.25
MRPS28-209ENST00000522987 FAM157CP0CG43 387 aa13.48□□□□□ -0.25
MRPS28-209ENST00000522987 CXCR1P25024 350 aa13.48□□□□□ -0.25
MRPS28-209ENST00000522987 SLC1A3P43003 542 aa13.48□□□□□ -0.25
MRPS28-209ENST00000522987 HTR3AP46098 478 aa13.48□□□□□ -0.25
MRPS28-209ENST00000522987 CLK1P49759 484 aaKnown RBP13.48□□□□□ -0.25
MRPS28-209ENST00000522987 VLDLRP98155 873 aa13.48□□□□□ -0.25
MRPS28-209ENST00000522987 LOXL1Q08397 574 aaPredicted RBP13.48□□□□□ -0.25
MRPS28-209ENST00000522987 STX3Q13277 289 aa13.48□□□□□ -0.25
MRPS28-209ENST00000522987 ELOA3BQ3SY89 546 aa13.48□□□□□ -0.25
MRPS28-209ENST00000522987 RPS26P11Q5JNZ5 115 aaPredicted RBP13.48□□□□□ -0.25
MRPS28-209ENST00000522987 KLHL24Q6TFL4 600 aa13.48□□□□□ -0.25
MRPS28-209ENST00000522987 ZNF836Q6ZNA1 936 aa13.48□□□□□ -0.25
MRPS28-209ENST00000522987 SSX8Q7RTT4 187 aa13.48□□□□□ -0.25
MRPS28-209ENST00000522987 ANKRD42Q8N9B4 389 aa13.48□□□□□ -0.25
MRPS28-209ENST00000522987 ZIC4Q8N9L1 334 aa13.48□□□□□ -0.25
MRPS28-209ENST00000522987 ELOA3Q8NG57 546 aa13.48□□□□□ -0.25
MRPS28-209ENST00000522987 OR9K2Q8NGE7 335 aa13.48□□□□□ -0.25
MRPS28-209ENST00000522987 TMEM158Q8WZ71 300 aa13.48□□□□□ -0.25
MRPS28-209ENST00000522987 ZIM3Q96PE6 472 aa13.48□□□□□ -0.25
MRPS28-209ENST00000522987 SORCS2Q96PQ0 1159 aa13.48□□□□□ -0.25
MRPS28-209ENST00000522987 TRNT1Q96Q11 434 aaKnown RBP13.48□□□□□ -0.25
MRPS28-209ENST00000522987 ALKBH3Q96Q83 286 aaPredicted RBP13.48□□□□□ -0.25
MRPS28-209ENST00000522987 VRK1Q99986 396 aaPredicted RBP13.48□□□□□ -0.25
MRPS28-209ENST00000522987 AMBRA1Q9C0C7 1298 aa13.48□□□□□ -0.25
MRPS28-209ENST00000522987 WDR55Q9H6Y2 383 aaPredicted RBP13.48□□□□□ -0.25
MRPS28-209ENST00000522987 SLC6A13Q9NSD5 602 aa13.48□□□□□ -0.25
MRPS28-209ENST00000522987 PARPBPQ9NWS1 579 aa13.48□□□□□ -0.25
MRPS28-209ENST00000522987 BTNL2Q9UIR0 455 aa13.48□□□□□ -0.25
MRPS28-209ENST00000522987 DCTN4Q9UJW0 460 aa13.48□□□□□ -0.25
MRPS28-209ENST00000522987 LIPT2A6NK58 231 aa13.47□□□□□ -0.25
MRPS28-209ENST00000522987 H7C417 338 aa13.47□□□□□ -0.25
MRPS28-209ENST00000522987 SDHDO14521 159 aa13.47□□□□□ -0.25
MRPS28-209ENST00000522987 ZNF208O43345 1280 aa13.47□□□□□ -0.25
MRPS28-209ENST00000522987 EIF1BO60739 113 aaKnown RBP13.47□□□□□ -0.25
MRPS28-209ENST00000522987 GUSBP08236 651 aa13.47□□□□□ -0.25
MRPS28-209ENST00000522987 KITP10721 976 aa13.47□□□□□ -0.25
MRPS28-209ENST00000522987 PRG2P13727 222 aa13.47□□□□□ -0.25
MRPS28-209ENST00000522987 ETFAP13804 333 aa13.47□□□□□ -0.25
MRPS28-209ENST00000522987 SLC25A16P16260 332 aa13.47□□□□□ -0.25
MRPS28-209ENST00000522987 EPHA3P29320 983 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms