RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 C3orf49Q96BT1 292 aa13.36□□□□□ -0.27
USP39-217ENST00000491659 ZNF607Q96SK3 696 aa13.36□□□□□ -0.27
USP39-217ENST00000491659 TMEM120AQ9BXJ8 343 aa13.36□□□□□ -0.27
USP39-217ENST00000491659 IKZF5Q9H5V7 419 aa13.36□□□□□ -0.27
USP39-217ENST00000491659 MRGBPQ9NV56 204 aa13.36□□□□□ -0.27
USP39-217ENST00000491659 RPS6KB2Q9UBS0 482 aa13.36□□□□□ -0.27
USP39-217ENST00000491659 SLC13A4Q9UKG4 626 aa13.36□□□□□ -0.27
USP39-217ENST00000491659 PRRC2AP48634 2157 aaKnown RBP13.36□□□□□ -0.27
USP39-217ENST00000491659 MED13LQ71F56 2210 aa13.35□□□□□ -0.27
USP39-217ENST00000491659 PRORSD1PA6NEY8 169 aa13.35□□□□□ -0.27
USP39-217ENST00000491659 LIPT2A6NK58 231 aa13.35□□□□□ -0.27
USP39-217ENST00000491659 RRP9O43818 475 aaKnown RBP13.35□□□□□ -0.27
USP39-217ENST00000491659 RAMP1O60894 148 aa13.35□□□□□ -0.27
USP39-217ENST00000491659 MRPL33O75394 65 aaKnown RBP13.35□□□□□ -0.27
USP39-217ENST00000491659 COX5AP20674 150 aa13.35□□□□□ -0.27
USP39-217ENST00000491659 EDNRAP25101 427 aa13.35□□□□□ -0.27
USP39-217ENST00000491659 NCALDP61601 193 aa13.35□□□□□ -0.27
USP39-217ENST00000491659 BNIP2Q12982 314 aa13.35□□□□□ -0.27
USP39-217ENST00000491659 NFYCQ13952 458 aa13.35□□□□□ -0.27
USP39-217ENST00000491659 CEACAM7Q14002 265 aa13.35□□□□□ -0.27
USP39-217ENST00000491659 CAPRIN1Q14444 709 aaKnown RBP13.35□□□□□ -0.27
USP39-217ENST00000491659 TAB1Q15750 504 aa13.35□□□□□ -0.27
USP39-217ENST00000491659 STK11Q15831 433 aa13.35□□□□□ -0.27
USP39-217ENST00000491659 ACKR1Q16570 336 aa13.35□□□□□ -0.27
USP39-217ENST00000491659 CYP51A1Q16850 503 aa13.35□□□□□ -0.27
USP39-217ENST00000491659 RUNDC3AQ59EK9 446 aa13.35□□□□□ -0.27
USP39-217ENST00000491659 OTUD3Q5T2D3 398 aaPredicted RBP13.35□□□□□ -0.27
USP39-217ENST00000491659 FBXW9Q5XUX1 488 aa13.35□□□□□ -0.27
USP39-217ENST00000491659 DHRS4L2Q6PKH6 230 aa13.35□□□□□ -0.27
USP39-217ENST00000491659 CASP12Q6UXS9 341 aa13.35□□□□□ -0.27
USP39-217ENST00000491659 ZNF704Q6ZNC4 412 aaPredicted RBP13.35□□□□□ -0.27
USP39-217ENST00000491659 HIPK4Q8NE63 616 aa13.35□□□□□ -0.27
USP39-217ENST00000491659 BHLHE22Q8NFJ8 381 aaPredicted RBP13.35□□□□□ -0.27
USP39-217ENST00000491659 PIGTQ969N2 578 aa13.35□□□□□ -0.27
USP39-217ENST00000491659 CCL19Q99731 98 aa13.35□□□□□ -0.27
USP39-217ENST00000491659 HIVEP1P15822 2718 aa13.34□□□□□ -0.27
USP39-217ENST00000491659 TEP1Q99973 2627 aaKnown RBP13.34□□□□□ -0.27
USP39-217ENST00000491659 ELOA3DA6NLF2 546 aaPredicted RBP13.34□□□□□ -0.27
USP39-217ENST00000491659 TMEM229AB2RXF0 380 aa13.34□□□□□ -0.27
USP39-217ENST00000491659 SERPINB7O75635 380 aa13.34□□□□□ -0.27
USP39-217ENST00000491659 AHSA1O95433 338 aa13.34□□□□□ -0.27
USP39-217ENST00000491659 IGHV3-9P01782 118 aa13.34□□□□□ -0.27
USP39-217ENST00000491659 GGT1P19440 569 aa13.34□□□□□ -0.27
USP39-217ENST00000491659 IGHV1-2P23083 117 aa13.34□□□□□ -0.27
USP39-217ENST00000491659 GTF2E2P29084 291 aaKnown RBP13.34□□□□□ -0.27
USP39-217ENST00000491659 AQP1P29972 269 aa13.34□□□□□ -0.27
USP39-217ENST00000491659 ADSLP30566 484 aaPredicted RBP13.34□□□□□ -0.27
USP39-217ENST00000491659 HOXC5Q00444 222 aa13.34□□□□□ -0.27
USP39-217ENST00000491659 ELOA3BQ3SY89 546 aa13.34□□□□□ -0.27
USP39-217ENST00000491659 C1orf140Q5VVS0 124 aa13.34□□□□□ -0.27
USP39-217ENST00000491659 SSX8Q7RTT4 187 aa13.34□□□□□ -0.27
USP39-217ENST00000491659 ATG4DQ86TL0 474 aaPredicted RBP13.34□□□□□ -0.27
USP39-217ENST00000491659 LSRQ86X29 649 aaPredicted RBP13.34□□□□□ -0.27
USP39-217ENST00000491659 TGIF2LYQ8IUE0 185 aa13.34□□□□□ -0.27
USP39-217ENST00000491659 C11orf65Q8NCR3 313 aa13.34□□□□□ -0.27
USP39-217ENST00000491659 ELOA3Q8NG57 546 aa13.34□□□□□ -0.27
USP39-217ENST00000491659 ANKRD27Q96NW4 1050 aa13.34□□□□□ -0.27
USP39-217ENST00000491659 CGREF1Q99674 301 aa13.34□□□□□ -0.27
USP39-217ENST00000491659 PIP5K1AQ99755 562 aa13.34□□□□□ -0.27
USP39-217ENST00000491659 ESRP2Q9H6T0 727 aaKnown RBP13.34□□□□□ -0.27
USP39-217ENST00000491659 FGFR1OP2Q9NVK5 253 aa13.34□□□□□ -0.27
USP39-217ENST00000491659 PARPBPQ9NWS1 579 aa13.34□□□□□ -0.27
USP39-217ENST00000491659 ZNF446Q9NWS9 450 aa13.34□□□□□ -0.27
USP39-217ENST00000491659 ADPRHL2Q9NX46 363 aa13.34□□□□□ -0.27
USP39-217ENST00000491659 FLVCR1Q9Y5Y0 555 aa13.34□□□□□ -0.27
USP39-217ENST00000491659 AQP7P3A6NL99 342 aa13.33□□□□□ -0.28
USP39-217ENST00000491659 SMPD2O60906 423 aa13.33□□□□□ -0.28
USP39-217ENST00000491659 AKR7A3O95154 331 aa13.33□□□□□ -0.28
USP39-217ENST00000491659 VIMP08670 466 aaKnown RBP13.33□□□□□ -0.28
USP39-217ENST00000491659 CD99P14209 185 aa13.33□□□□□ -0.28
USP39-217ENST00000491659 ARFIP2P53365 341 aa13.33□□□□□ -0.28
USP39-217ENST00000491659 RGS8P57771 180 aaPredicted RBP13.33□□□□□ -0.28
USP39-217ENST00000491659 MTPNP58546 118 aa13.33□□□□□ -0.28
USP39-217ENST00000491659 RBBP4Q09028 425 aa13.33□□□□□ -0.28
USP39-217ENST00000491659 PPA1Q15181 289 aa13.33□□□□□ -0.28
USP39-217ENST00000491659 GPAT4Q86UL3 456 aa13.33□□□□□ -0.28
USP39-217ENST00000491659 RETREG3Q86VR2 466 aa13.33□□□□□ -0.28
USP39-217ENST00000491659 ARMC8Q8IUR7 673 aa13.33□□□□□ -0.28
USP39-217ENST00000491659 TMEM99Q8N816 258 aa13.33□□□□□ -0.28
USP39-217ENST00000491659 STK35Q8TDR2 534 aa13.33□□□□□ -0.28
USP39-217ENST00000491659 MUCL1Q96DR8 90 aa13.33□□□□□ -0.28
USP39-217ENST00000491659 SF3B5Q9BWJ5 86 aaKnown RBP13.33□□□□□ -0.28
USP39-217ENST00000491659 TRIM2Q9C040 744 aa13.33□□□□□ -0.28
USP39-217ENST00000491659 EVA1AQ9H8M9 152 aa13.33□□□□□ -0.28
USP39-217ENST00000491659 C12orf10Q9HB07 376 aa13.33□□□□□ -0.28
USP39-217ENST00000491659 ASB6Q9NWX5 421 aa13.33□□□□□ -0.28
USP39-217ENST00000491659 TAS2R16Q9NYV7 291 aa13.33□□□□□ -0.28
USP39-217ENST00000491659 UPB1Q9UBR1 384 aa13.33□□□□□ -0.28
USP39-217ENST00000491659 MALT1Q9UDY8 824 aa13.33□□□□□ -0.28
USP39-217ENST00000491659 TESQ9UGI8 421 aaKnown RBP13.33□□□□□ -0.28
USP39-217ENST00000491659 RNF115Q9Y4L5 304 aa13.33□□□□□ -0.28
USP39-217ENST00000491659 DSCAMO60469 2012 aa13.32□□□□□ -0.28
USP39-217ENST00000491659 ITPR3Q14573 2671 aa13.32□□□□□ -0.28
USP39-217ENST00000491659 CIB4A0PJX0 185 aa13.32□□□□□ -0.28
USP39-217ENST00000491659 CCT8L1PA6NM43 557 aa13.32□□□□□ -0.28
USP39-217ENST00000491659 RAD51DO75771 328 aa13.32□□□□□ -0.28
USP39-217ENST00000491659 CD3EP07766 207 aa13.32□□□□□ -0.28
USP39-217ENST00000491659 FAPQ12884 760 aa13.32□□□□□ -0.28
USP39-217ENST00000491659 SELPLGQ14242 412 aa13.32□□□□□ -0.28
USP39-217ENST00000491659 SLC17A1Q14916 467 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms