RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 LRRC30A6NM36 301 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 ZNF701M0R085 212 aaPredicted RBP3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 PSMD11O00231 422 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 FOXE1O00358 373 aaPredicted RBP3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 TRDMT1O14717 391 aaKnown RBP3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 LSM1O15116 133 aaKnown RBP3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 TBL1XO60907 577 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 STX11O75558 287 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 SCGNO76038 276 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 KRT6AP02538 564 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 HSPB1P04792 205 aaKnown RBP3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 CRYGCP07315 174 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 ANXA3P12429 323 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 PTNP21246 168 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 MSR1P21757 451 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 PSMA2P25787 234 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 ATP5C1P36542 298 aaKnown RBP3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 FDFT1P37268 417 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 NOVA1P51513 510 aaKnown RBP3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 C21orf59P57076 290 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 SEC61GP60059 68 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 RND3P61587 244 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 BDH1Q02338 343 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 MERTKQ12866 999 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 CHRNA6Q15825 494 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 FAM83EQ2M2I3 478 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 CTSL3PQ5NE16 218 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 AGBL2Q5U5Z8 902 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 DEGS2Q6QHC5 323 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 TMEM179BQ7Z7N9 219 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 TPRA1Q86W33 373 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 CD302Q8IX05 232 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 SETD7Q8WTS6 366 aaKnown RBP3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 SPRYD4Q8WW59 207 aaPredicted RBP3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 TRUB1Q8WWH5 349 aaKnown RBP3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 IL1F10Q8WWZ1 152 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 PSMG2Q969U7 264 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 MARC2Q969Z3 335 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 C18orf25Q96B23 403 aaPredicted RBP3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 C16orf74Q96GX8 76 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 COQ2Q96H96 371 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 C8orf76Q96K31 380 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 PRRC1Q96M27 445 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 VSTM2LQ96N03 204 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 OMDQ99983 421 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 SPATA16Q9BXB7 569 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 Q9H3A6 140 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 PTGES2Q9H7Z7 377 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 GEMIN7Q9H840 131 aaKnown RBP3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 ZNF702PQ9H963 129 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 ELOVL3Q9HB03 270 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 SPACA1Q9HBV2 294 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 ZNF160Q9HCG1 818 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 QPCTLQ9NXS2 382 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 PDP1Q9P0J1 537 aaPredicted RBP3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 CA5BQ9Y2D0 317 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 L3MBTL1Q9Y468 752 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 BZW2Q9Y6E2 419 aaKnown RBP3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 CCDC7Q96M83 1385 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 NINLQ9Y2I6 1382 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 CUX2O14529 1486 aa3.46□□□□□ -1.86
HMGB1P38-201ENST00000490557 KIF27Q86VH2 1401 aa3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 TUBAL3A6NHL2 446 aa3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 CLDN5O00501 218 aa3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 JAK2O60674 1132 aa3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 ACTL6AO96019 429 aa3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 APOA1P02647 267 aa3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 TPM3P06753 285 aa3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 STAG3L2P0CL84 134 aa3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 HPGDP15428 266 aa3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 TPSB2P20231 275 aa3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 PCMT1P22061 227 aa3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 ATP5A1P25705 553 aaKnown RBP3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 BCAP31P51572 246 aa3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 RGS8P57771 180 aaPredicted RBP3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 OTUD4Q01804 1114 aaKnown RBP3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 ENPEPQ07075 957 aa3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 TPSAB1Q15661 275 aa3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 PRR4Q16378 134 aa3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 HNRNPA1L2Q32P51 320 aaKnown RBP3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 XKR7Q5GH72 579 aa3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 PLCXD3Q63HM9 321 aa3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 PYHIN1Q6K0P9 492 aa3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 ZNF544Q6NX49 715 aa3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 C6orf89Q6UWU4 347 aa3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 FRA10AC1Q70Z53 315 aa3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 HSD11B1LQ7Z5J1 315 aa3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 TGIF2LXQ8IUE1 241 aa3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 SLC34A3Q8N130 599 aa3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 SYT14Q8NB59 555 aa3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 CLHC1Q8NHS4 586 aa3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 DDI1Q8WTU0 396 aa3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 ASZ1Q8WWH4 475 aa3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 OR1E3Q8WZA6 343 aa3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 SGK3Q96BR1 496 aa3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 FEM1AQ9BSK4 669 aa3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 CCDC94Q9BW85 323 aaPredicted RBP3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 SLC25A51Q9H1U9 297 aa3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 TREM1Q9NP99 234 aa3.45□□□□□ -1.86
HMGB1P38-201ENST00000490557 PLSCR3Q9NRY6 295 aa3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms