RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 LSM12Q3MHD2 195 aaKnown RBP13.3□□□□□ -0.28
MCF2L-228ENST00000487354 TUBA1AQ71U36 451 aa13.3□□□□□ -0.28
MCF2L-228ENST00000487354 C6orf120Q7Z4R8 191 aa13.3□□□□□ -0.28
MCF2L-228ENST00000487354 CLECL1Q8IZS7 167 aa13.3□□□□□ -0.28
MCF2L-228ENST00000487354 ZNF786Q8N393 782 aa13.3□□□□□ -0.28
MCF2L-228ENST00000487354 ZNF563Q8TA94 476 aa13.3□□□□□ -0.28
MCF2L-228ENST00000487354 MIPOL1Q8TD10 442 aa13.3□□□□□ -0.28
MCF2L-228ENST00000487354 DOK1Q99704 481 aa13.3□□□□□ -0.28
MCF2L-228ENST00000487354 SAP130Q9H0E3 1048 aa13.3□□□□□ -0.28
MCF2L-228ENST00000487354 OBP2BQ9NPH6 170 aa13.3□□□□□ -0.28
MCF2L-228ENST00000487354 EXOSC3Q9NQT5 275 aaKnown RBP13.3□□□□□ -0.28
MCF2L-228ENST00000487354 PARPBPQ9NWS1 579 aa13.3□□□□□ -0.28
MCF2L-228ENST00000487354 OSGIN1Q9UJX0 560 aa13.3□□□□□ -0.28
MCF2L-228ENST00000487354 TMED7-TICAM2A0A0A6YYA0 188 aa13.29□□□□□ -0.28
MCF2L-228ENST00000487354 ARPC4-TTLL3A0A0A6YYG9 625 aa13.29□□□□□ -0.28
MCF2L-228ENST00000487354 A0A0A6YYJ9 748 aa13.29□□□□□ -0.28
MCF2L-228ENST00000487354 TMEM89A2RUT3 159 aa13.29□□□□□ -0.28
MCF2L-228ENST00000487354 TMEM114B3SHH9 223 aa13.29□□□□□ -0.28
MCF2L-228ENST00000487354 SLCO1B7G3V0H7 640 aa13.29□□□□□ -0.28
MCF2L-228ENST00000487354 NR5A2O00482 541 aa13.29□□□□□ -0.28
MCF2L-228ENST00000487354 LGI1O95970 557 aa13.29□□□□□ -0.28
MCF2L-228ENST00000487354 C1QCP02747 245 aa13.29□□□□□ -0.28
MCF2L-228ENST00000487354 FGF4P08620 206 aa13.29□□□□□ -0.28
MCF2L-228ENST00000487354 CELA3BP08861 270 aa13.29□□□□□ -0.28
MCF2L-228ENST00000487354 CDH2P19022 906 aaPredicted RBP13.29□□□□□ -0.28
MCF2L-228ENST00000487354 ARRB2P32121 409 aa13.29□□□□□ -0.28
MCF2L-228ENST00000487354 CRHR1P34998 444 aa13.29□□□□□ -0.28
MCF2L-228ENST00000487354 SOAT1P35610 550 aa13.29□□□□□ -0.28
MCF2L-228ENST00000487354 SLC35A1P78382 337 aa13.29□□□□□ -0.28
MCF2L-228ENST00000487354 CCNIQ14094 377 aa13.29□□□□□ -0.28
MCF2L-228ENST00000487354 VHLLQ6RSH7 139 aa13.29□□□□□ -0.28
MCF2L-228ENST00000487354 PAQR6Q6TCH4 344 aa13.29□□□□□ -0.28
MCF2L-228ENST00000487354 KLHL24Q6TFL4 600 aa13.29□□□□□ -0.28
MCF2L-228ENST00000487354 TRMT10CQ7L0Y3 403 aaKnown RBP13.29□□□□□ -0.28
MCF2L-228ENST00000487354 DDIASQ8IXT1 998 aa13.29□□□□□ -0.28
MCF2L-228ENST00000487354 NUP37Q8NFH4 326 aa13.29□□□□□ -0.28
MCF2L-228ENST00000487354 OR9K2Q8NGE7 335 aa13.29□□□□□ -0.28
MCF2L-228ENST00000487354 BCL2L2Q92843 193 aaPredicted RBP13.29□□□□□ -0.28
MCF2L-228ENST00000487354 SLC35G5Q96KT7 338 aa13.29□□□□□ -0.28
MCF2L-228ENST00000487354 DUSP26Q9BV47 211 aa13.29□□□□□ -0.28
MCF2L-228ENST00000487354 OR51I1Q9H343 314 aa13.29□□□□□ -0.28
MCF2L-228ENST00000487354 METTL17Q9H7H0 456 aaPredicted RBP13.29□□□□□ -0.28
MCF2L-228ENST00000487354 SLC35A3Q9Y2D2 325 aa13.29□□□□□ -0.28
MCF2L-228ENST00000487354 TMED7Q9Y3B3 224 aa13.29□□□□□ -0.28
MCF2L-228ENST00000487354 RNF103-CHMP3A0A140T963 221 aa13.28□□□□□ -0.28
MCF2L-228ENST00000487354 ZNF503-AS2A6NEH8 195 aa13.28□□□□□ -0.28
MCF2L-228ENST00000487354 LYNX1G3V0Z9 82 aa13.28□□□□□ -0.28
MCF2L-228ENST00000487354 hCG_2039718K7EN88 272 aa13.28□□□□□ -0.28
MCF2L-228ENST00000487354 ZNF208O43345 1280 aa13.28□□□□□ -0.28
MCF2L-228ENST00000487354 EIF1BO60739 113 aaKnown RBP13.28□□□□□ -0.28
MCF2L-228ENST00000487354 PEX11AO75192 247 aa13.28□□□□□ -0.28
MCF2L-228ENST00000487354 IGKV3-15P01624 115 aa13.28□□□□□ -0.28
MCF2L-228ENST00000487354 FAM153BP0C7A2 387 aa13.28□□□□□ -0.28
MCF2L-228ENST00000487354 LYNX1P0DP58 116 aa13.28□□□□□ -0.28
MCF2L-228ENST00000487354 FKBP2P26885 142 aaKnown RBP13.28□□□□□ -0.28
MCF2L-228ENST00000487354 THBS4P35443 961 aa13.28□□□□□ -0.28
MCF2L-228ENST00000487354 IDH2P48735 452 aaKnown RBP13.28□□□□□ -0.28
MCF2L-228ENST00000487354 MSMPQ1L6U9 139 aa13.28□□□□□ -0.28
MCF2L-228ENST00000487354 C3orf36Q3SXR2 165 aa13.28□□□□□ -0.28
MCF2L-228ENST00000487354 FAM153CQ494X1 144 aa13.28□□□□□ -0.28
MCF2L-228ENST00000487354 C6orf136Q5SQH8 315 aa13.28□□□□□ -0.28
MCF2L-228ENST00000487354 ANKRD16Q6P6B7 361 aa13.28□□□□□ -0.28
MCF2L-228ENST00000487354 BHLHB9Q6PI77 547 aa13.28□□□□□ -0.28
MCF2L-228ENST00000487354 CDK20Q8IZL9 346 aa13.28□□□□□ -0.28
MCF2L-228ENST00000487354 SVOPLQ8N434 492 aa13.28□□□□□ -0.28
MCF2L-228ENST00000487354 TMEM99Q8N816 258 aa13.28□□□□□ -0.28
MCF2L-228ENST00000487354 POMGNT2Q8NAT1 580 aa13.28□□□□□ -0.28
MCF2L-228ENST00000487354 OIT3Q8WWZ8 545 aa13.28□□□□□ -0.28
MCF2L-228ENST00000487354 CNOT9Q92600 299 aaKnown RBP13.28□□□□□ -0.28
MCF2L-228ENST00000487354 AURKBQ96GD4 344 aaPredicted RBP13.28□□□□□ -0.28
MCF2L-228ENST00000487354 ALKBH3Q96Q83 286 aaPredicted RBP13.28□□□□□ -0.28
MCF2L-228ENST00000487354 RAB1BQ9H0U4 201 aa13.28□□□□□ -0.28
MCF2L-228ENST00000487354 ZNF442Q9H7R0 627 aa13.28□□□□□ -0.28
MCF2L-228ENST00000487354 ATAD3AQ9NVI7 634 aa13.28□□□□□ -0.28
MCF2L-228ENST00000487354 METRNQ9UJH8 293 aa13.28□□□□□ -0.28
MCF2L-228ENST00000487354 PCDHGB4Q9UN71 923 aa13.28□□□□□ -0.28
MCF2L-228ENST00000487354 CMYA5Q8N3K9 4069 aa13.27□□□□□ -0.28
MCF2L-228ENST00000487354 DUXAA6NLW8 204 aa13.27□□□□□ -0.29
MCF2L-228ENST00000487354 FAM157AC9JC47 383 aa13.27□□□□□ -0.29
MCF2L-228ENST00000487354 CFLARO15519 480 aa13.27□□□□□ -0.29
MCF2L-228ENST00000487354 SCN2BO60939 215 aa13.27□□□□□ -0.29
MCF2L-228ENST00000487354 LYPLA1O75608 230 aaPredicted RBP13.27□□□□□ -0.29
MCF2L-228ENST00000487354 CHEK2O96017 543 aa13.27□□□□□ -0.29
MCF2L-228ENST00000487354 CRYAAP02489 173 aa13.27□□□□□ -0.29
MCF2L-228ENST00000487354 OR12D1P0DN82 309 aa13.27□□□□□ -0.29
MCF2L-228ENST00000487354 MAPK1P28482 360 aa13.27□□□□□ -0.29
MCF2L-228ENST00000487354 OTUD3Q5T2D3 398 aaPredicted RBP13.27□□□□□ -0.29
MCF2L-228ENST00000487354 IL23RQ5VWK5 629 aa13.27□□□□□ -0.29
MCF2L-228ENST00000487354 AAED1Q7RTV5 226 aa13.27□□□□□ -0.29
MCF2L-228ENST00000487354 C16orf62Q7Z3J2 963 aa13.27□□□□□ -0.29
MCF2L-228ENST00000487354 NATD1Q8N6N6 113 aa13.27□□□□□ -0.29
MCF2L-228ENST00000487354 SGMS2Q8NHU3 365 aa13.27□□□□□ -0.29
MCF2L-228ENST00000487354 NEU4Q8WWR8 484 aaPredicted RBP13.27□□□□□ -0.29
MCF2L-228ENST00000487354 RAB8BQ92930 207 aa13.27□□□□□ -0.29
MCF2L-228ENST00000487354 ZMYND19Q96E35 227 aaPredicted RBP13.27□□□□□ -0.29
MCF2L-228ENST00000487354 PPP3R2Q96LZ3 170 aa13.27□□□□□ -0.29
MCF2L-228ENST00000487354 RACGAP1Q9H0H5 632 aa13.27□□□□□ -0.29
MCF2L-228ENST00000487354 OCEL1Q9H607 264 aa13.27□□□□□ -0.29
MCF2L-228ENST00000487354 WDR45Q9Y484 360 aa13.27□□□□□ -0.29
MCF2L-228ENST00000487354 SPEF1Q9Y4P9 236 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms