RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 CCDC163A0A0D9SF12 145 aa12.26□□□□□ -0.45
USP40-214ENST00000483519 TRBV2A0A0J9YWF9 115 aa12.26□□□□□ -0.45
USP40-214ENST00000483519 IFITM5A6NNB3 132 aa12.26□□□□□ -0.45
USP40-214ENST00000483519 ACOT7O00154 380 aa12.26□□□□□ -0.45
USP40-214ENST00000483519 SIRPAP78324 504 aa12.26□□□□□ -0.45
USP40-214ENST00000483519 DPTQ07507 201 aa12.26□□□□□ -0.45
USP40-214ENST00000483519 GAS6Q14393 721 aa12.26□□□□□ -0.45
USP40-214ENST00000483519 UBXN2BQ14CS0 331 aa12.26□□□□□ -0.45
USP40-214ENST00000483519 HES5Q5TA89 166 aa12.26□□□□□ -0.45
USP40-214ENST00000483519 RPL22L1Q6P5R6 122 aaKnown RBP12.26□□□□□ -0.45
USP40-214ENST00000483519 OR13C2Q8NGS9 318 aa12.26□□□□□ -0.45
USP40-214ENST00000483519 HMGB4Q8WW32 186 aa12.26□□□□□ -0.45
USP40-214ENST00000483519 BPIFA2Q96DR5 249 aa12.26□□□□□ -0.45
USP40-214ENST00000483519 SLC25A38Q96DW6 304 aa12.26□□□□□ -0.45
USP40-214ENST00000483519 GIMAP5Q96F15 307 aa12.26□□□□□ -0.45
USP40-214ENST00000483519 PELI1Q96FA3 418 aa12.26□□□□□ -0.45
USP40-214ENST00000483519 SERINC2Q96SA4 455 aa12.26□□□□□ -0.45
USP40-214ENST00000483519 MENTQ9BUN1 341 aa12.26□□□□□ -0.45
USP40-214ENST00000483519 FXYD6Q9H0Q3 95 aa12.26□□□□□ -0.45
USP40-214ENST00000483519 GPR160Q9UJ42 338 aa12.26□□□□□ -0.45
USP40-214ENST00000483519 CES1P1Q9UKY3 287 aa12.26□□□□□ -0.45
USP40-214ENST00000483519 SIGLEC7Q9Y286 467 aa12.26□□□□□ -0.45
USP40-214ENST00000483519 PCDHGA5Q9Y5G8 931 aa12.26□□□□□ -0.45
USP40-214ENST00000483519 IFNGP01579 166 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 THBS1P07996 1170 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 RAB40ALP0C0E4 278 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 C6P13671 934 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 SRMP19623 302 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 ERVK-21P61565 698 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 RPS11P62280 158 aaKnown RBP eCLIP12.25□□□□□ -0.45
USP40-214ENST00000483519 ILF3Q12906 894 aaKnown RBP eCLIP12.25□□□□□ -0.45
USP40-214ENST00000483519 IL10RAQ13651 578 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 C18orf63Q68DL7 685 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 FCRLBQ6BAA4 426 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 TMPRSS11FQ6ZWK6 438 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 CYB561A3Q8NBI2 242 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 DNAAF1Q8NEP3 725 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 C1orf216Q8TAB5 229 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 RAB40AQ8WXH6 277 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 MS4A6EQ96DS6 147 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 MS4A4EQ96PG1 132 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 SLC38A3Q99624 504 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 TTTY10Q9BZA0 68 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 MCCC2Q9HCC0 563 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 SPHK2Q9NRA0 654 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 ATPIF1Q9UII2 106 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 TBC1D3EA0A087X179 549 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 A0A1W2PS29 197 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 CHURC1-FNTBB4DL54 471 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 ABCD4O14678 606 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 GPRIN2O60269 458 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 EDNRAP25101 427 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 FAUP35544 74 aaKnown RBP12.25□□□□□ -0.45
USP40-214ENST00000483519 EEF1A1P68104 462 aaKnown RBP12.25□□□□□ -0.45
USP40-214ENST00000483519 STX4Q12846 297 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 ABHD17CQ6PCB6 329 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 WDR88Q6ZMY6 472 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 C17orf107Q6ZR85 190 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 FCRLAQ7L513 359 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 DGLUCYQ7Z3D6 616 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 LRRTM4Q86VH4 590 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 SLC39A11Q8N1S5 342 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 CDS1Q92903 461 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 MRPS24Q96EL2 167 aaKnown RBP12.25□□□□□ -0.45
USP40-214ENST00000483519 SLC6A20Q9NP91 592 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 MED31Q9Y3C7 131 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 PTPRSQ13332 1948 aa12.25□□□□□ -0.45
USP40-214ENST00000483519 TMEM265A0A087WTH1 108 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 TBC1D3KA0A087X1G2 549 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 TBC1D3BA6NDS4 549 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 TBC1D3FA6NER0 549 aaPredicted RBP12.24□□□□□ -0.45
USP40-214ENST00000483519 GRXCR1A8MXD5 290 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 F5H5P2 479 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 NRG2O14511 850 aaPredicted RBP12.24□□□□□ -0.45
USP40-214ENST00000483519 SPINT1O43278 529 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 SELENOFO60613 162 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 KDM4BO94953 1096 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 STATHP02808 62 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 GYPBP06028 91 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 OR2T7P0C7T2 308 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 DPP4P27487 766 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 PPM1AP35813 382 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 PTH2RP49190 550 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 P2RX1P51575 399 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 PRDX1Q06830 199 aaKnown RBP12.24□□□□□ -0.45
USP40-214ENST00000483519 DUSP8Q13202 625 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 OR1Q1Q15612 314 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 GPR68Q15743 365 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 CEBPEQ15744 281 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 ZIC1Q15915 447 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 CLVS2Q5SYC1 327 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 TBC1D3GQ6DHY5 549 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 MFSD12Q6NUT3 480 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 ARHGAP11AQ6P4F7 1023 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 PM20D2Q8IYS1 436 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 POMGNT2Q8NAT1 580 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 SLC16A11Q8NCK7 471 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 OR2T27Q8NH04 317 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 ZDHHC1Q8WTX9 485 aa12.24□□□□□ -0.45
USP40-214ENST00000483519 SNX33Q8WV41 574 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms