RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 FBXO9Q9UK97 447 aaPredicted RBP6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 MKLN1Q9UL63 735 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 CLEC4AQ9UMR7 237 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 SLC35A3Q9Y2D2 325 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 WDR45Q9Y484 360 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 TNFRSF18Q9Y5U5 241 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 ARID1AO14497 2285 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 GOLGA8QA0A0J9YX86 632 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 GOLGA8OA6NCC3 632 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 GOLGA8NF8WBI6 632 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 EFNA2O43921 213 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 UGT2B17O75795 530 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 NTN1O95631 604 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 IL6P05231 212 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 ALDOCP09972 364 aaKnown RBP6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 UBTFL6P0CB48 400 aaPredicted RBP6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 OR12D1P0DN82 309 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 CD99P14209 185 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 IDO1P14902 403 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 PGCP20142 388 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 EPHA3P29320 983 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 SHC1P29353 583 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 AGTR1P30556 359 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 SLC7A1P30825 629 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 RIPPLY3P57055 190 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 RAC3P60763 192 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 UFM1P61960 85 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 SKP2Q13309 424 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 DEFB113Q30KQ7 82 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 GPAT3Q53EU6 434 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 SLC25A53Q5H9E4 307 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 BEND6Q5SZJ8 279 aaPredicted RBP6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 NXNQ6DKJ4 435 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 TYW3Q6IPR3 259 aaKnown RBP6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 STAC2Q6ZMT1 411 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 EIF3MQ7L2H7 374 aaKnown RBP6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 FCRLAQ7L513 359 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 ZNF550Q7Z398 422 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 TGIF2LYQ8IUE0 185 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 ZNF619Q8N2I2 560 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 SLC43A2Q8N370 569 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 FAM169BQ8N8A8 192 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 GLB1L3Q8NCI6 653 aaPredicted RBP6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 ATP6V1C2Q8NEY4 427 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 ABHD3Q8WU67 409 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 TMEM234Q8WY98 164 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 ROBO4Q8WZ75 1007 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 ST8SIA1Q92185 356 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 RAB8BQ92930 207 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 ROPN1LQ96C74 230 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 TLCD1Q96CP7 247 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 ANAPC16Q96DE5 110 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 PIK3IP1Q96FE7 263 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 ZC3HAV1LQ96H79 300 aaKnown RBP6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 TEX37Q96LM6 180 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 OR52E6Q96RD3 313 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 PANX1Q96RD7 426 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 TACO1Q9BSH4 297 aaKnown RBP6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 THUMPD3Q9BV44 507 aaKnown RBP6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 SRXN1Q9BYN0 137 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 OR10A4Q9H209 315 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 WDR55Q9H6Y2 383 aaPredicted RBP6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 MANSC1Q9H8J5 431 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 TMBIM4Q9HC24 238 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 SERINC1Q9NRX5 453 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 BEX4Q9NWD9 120 aaPredicted RBP6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 KLHL13Q9P2N7 655 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 KCNE5Q9UJ90 142 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 GPR45Q9Y5Y3 372 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 PRR14LQ5THK1 2151 aa6.05□□□□□ -1.44
CCDC88A-213ENST00000476903 C2CD3Q4AC94 2353 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 CENPVL1A0A0U1RR11 272 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 A0A1W2PPR1 153 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 CCDC154A6NI56 674 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 DEFB108AA8MXU0 73 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 C9JVG2 144 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 HMGN4O00479 90 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 RFXANKO14593 260 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 KLF11O14901 512 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 RRP9O43818 475 aaKnown RBP6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 SLC22A3O75751 556 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 PRKD3O94806 890 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 H6PDO95479 791 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 CD53P19397 219 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 KLK2P20151 261 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 PSMB1P20618 241 aaKnown RBP6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 FPR2P25090 351 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 IL12AP29459 219 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 PGM1P36871 562 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 SESN3P58005 492 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 KCNJ10P78508 379 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 FUT5Q11128 374 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 MERTKQ12866 999 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 MAPK14Q16539 360 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 GSTA3Q16772 222 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 TIGD2Q4W5G0 525 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 PDCD4Q53EL6 469 aaKnown RBP6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 AP1ARQ63HQ0 302 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 FRRS1Q6ZNA5 592 aa6.04□□□□□ -1.44
CCDC88A-213ENST00000476903 ZNF621Q6ZSS3 439 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms