RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 MRPL33O75394 65 aaKnown RBP16.87■□□□□ 0.29
COL7A1-207ENST00000467985 PAX1P15863 534 aa16.87■□□□□ 0.29
COL7A1-207ENST00000467985 GGT1P19440 569 aa16.87■□□□□ 0.29
COL7A1-207ENST00000467985 ARFIP2P53365 341 aa16.87■□□□□ 0.29
COL7A1-207ENST00000467985 PPA1Q15181 289 aa16.87■□□□□ 0.29
COL7A1-207ENST00000467985 GTDC1Q4AE62 458 aa16.87■□□□□ 0.29
COL7A1-207ENST00000467985 TIMM23BQ5SRD1 257 aa16.87■□□□□ 0.29
COL7A1-207ENST00000467985 WBP2NLQ6ICG8 309 aa16.87■□□□□ 0.29
COL7A1-207ENST00000467985 SLC2A7Q6PXP3 512 aa16.87■□□□□ 0.29
COL7A1-207ENST00000467985 BLOC1S3Q6QNY0 202 aa16.87■□□□□ 0.29
COL7A1-207ENST00000467985 UBE2J2Q8N2K1 259 aa16.87■□□□□ 0.29
COL7A1-207ENST00000467985 IGFBPL1Q8WX77 278 aa16.87■□□□□ 0.29
COL7A1-207ENST00000467985 SLC35B4Q969S0 331 aa16.87■□□□□ 0.29
COL7A1-207ENST00000467985 ELAC2Q9BQ52 826 aaKnown RBP16.87■□□□□ 0.29
COL7A1-207ENST00000467985 SPATA9Q9BWV2 254 aa16.87■□□□□ 0.29
COL7A1-207ENST00000467985 TMEM120AQ9BXJ8 343 aa16.87■□□□□ 0.29
COL7A1-207ENST00000467985 BCL2L10Q9HD36 194 aa16.87■□□□□ 0.29
COL7A1-207ENST00000467985 KLHL14Q9P2G3 628 aa16.87■□□□□ 0.29
COL7A1-207ENST00000467985 PGM3O95394 542 aa16.86■□□□□ 0.29
COL7A1-207ENST00000467985 PLAUP00749 431 aa16.86■□□□□ 0.29
COL7A1-207ENST00000467985 GPIP06744 558 aa16.86■□□□□ 0.29
COL7A1-207ENST00000467985 BMP2P12643 396 aa16.86■□□□□ 0.29
COL7A1-207ENST00000467985 DRD4P21917 467 aa16.86■□□□□ 0.29
COL7A1-207ENST00000467985 IGHV1-2P23083 117 aa16.86■□□□□ 0.29
COL7A1-207ENST00000467985 PPIBP23284 216 aaKnown RBP16.86■□□□□ 0.29
COL7A1-207ENST00000467985 EDNRAP25101 427 aa16.86■□□□□ 0.29
COL7A1-207ENST00000467985 IDUAP35475 653 aa16.86■□□□□ 0.29
COL7A1-207ENST00000467985 ACAA2P42765 397 aaKnown RBP16.86■□□□□ 0.29
COL7A1-207ENST00000467985 STK11Q15831 433 aa16.86■□□□□ 0.29
COL7A1-207ENST00000467985 PAQR6Q6TCH4 344 aa16.86■□□□□ 0.29
COL7A1-207ENST00000467985 SPATA21Q7Z572 469 aa16.86■□□□□ 0.29
COL7A1-207ENST00000467985 CCDC103Q8IW40 242 aa16.86■□□□□ 0.29
COL7A1-207ENST00000467985 ZNF433Q8N7K0 673 aaPredicted RBP16.86■□□□□ 0.29
COL7A1-207ENST00000467985 BBS10Q8TAM1 723 aa16.86■□□□□ 0.29
COL7A1-207ENST00000467985 AKAP1Q92667 903 aaKnown RBP eCLIP16.86■□□□□ 0.29
COL7A1-207ENST00000467985 DNAJA3Q96EY1 480 aa16.86■□□□□ 0.29
COL7A1-207ENST00000467985 PERPQ96FX8 193 aa16.86■□□□□ 0.29
COL7A1-207ENST00000467985 EBF4Q9BQW3 602 aa16.86■□□□□ 0.29
COL7A1-207ENST00000467985 ASB6Q9NWX5 421 aa16.86■□□□□ 0.29
COL7A1-207ENST00000467985 SLC9A8Q9Y2E8 581 aa16.86■□□□□ 0.29
COL7A1-207ENST00000467985 C5orf58C9J3I9 102 aa16.85■□□□□ 0.29
COL7A1-207ENST00000467985 CLOCKO15516 846 aa16.85■□□□□ 0.29
COL7A1-207ENST00000467985 SHOX2O60902 331 aaPredicted RBP16.85■□□□□ 0.29
COL7A1-207ENST00000467985 GKN3PP0CG01 181 aa16.85■□□□□ 0.29
COL7A1-207ENST00000467985 IMPDH2P12268 514 aa16.85■□□□□ 0.29
COL7A1-207ENST00000467985 HOXB9P17482 250 aaPredicted RBP16.85■□□□□ 0.29
COL7A1-207ENST00000467985 NCF2P19878 526 aaPredicted RBP16.85■□□□□ 0.29
COL7A1-207ENST00000467985 ADSLP30566 484 aaPredicted RBP16.85■□□□□ 0.29
COL7A1-207ENST00000467985 PTH2RP49190 550 aa16.85■□□□□ 0.29
COL7A1-207ENST00000467985 ATP4BP51164 291 aa16.85■□□□□ 0.29
COL7A1-207ENST00000467985 ZNF311Q5JNZ3 666 aa16.85■□□□□ 0.29
COL7A1-207ENST00000467985 RPS26P11Q5JNZ5 115 aaPredicted RBP16.85■□□□□ 0.29
COL7A1-207ENST00000467985 LRIF1Q5T3J3 769 aa16.85■□□□□ 0.29
COL7A1-207ENST00000467985 CGB2Q6NT52 195 aa16.85■□□□□ 0.29
COL7A1-207ENST00000467985 ZC3HAV1Q7Z2W4 902 aaKnown RBP16.85■□□□□ 0.29
COL7A1-207ENST00000467985 YTHDF3Q7Z739 585 aaKnown RBP16.85■□□□□ 0.29
COL7A1-207ENST00000467985 FUNDC1Q8IVP5 155 aa16.85■□□□□ 0.29
COL7A1-207ENST00000467985 CADM2Q8N3J6 435 aa16.85■□□□□ 0.29
COL7A1-207ENST00000467985 SPDL1Q96EA4 605 aa16.85■□□□□ 0.29
COL7A1-207ENST00000467985 PIF1Q9H611 641 aa16.85■□□□□ 0.29
COL7A1-207ENST00000467985 CCDC167Q9P0B6 97 aa16.85■□□□□ 0.29
COL7A1-207ENST00000467985 MALT1Q9UDY8 824 aa16.85■□□□□ 0.29
COL7A1-207ENST00000467985 TRIM33Q9UPN9 1127 aa16.85■□□□□ 0.29
COL7A1-207ENST00000467985 CORO2BQ9UQ03 480 aa16.85■□□□□ 0.29
COL7A1-207ENST00000467985 ZC3H12DA2A288 527 aaKnown RBP16.84■□□□□ 0.29
COL7A1-207ENST00000467985 OR5H1A6NKK0 313 aa16.84■□□□□ 0.29
COL7A1-207ENST00000467985 A8MVM7 634 aa16.84■□□□□ 0.29
COL7A1-207ENST00000467985 FAM171A2A8MVW0 826 aa16.84■□□□□ 0.29
COL7A1-207ENST00000467985 NR5A2O00482 541 aa16.84■□□□□ 0.29
COL7A1-207ENST00000467985 INHBBP09529 407 aa16.84■□□□□ 0.29
COL7A1-207ENST00000467985 BSPH1Q075Z2 132 aa16.84■□□□□ 0.29
COL7A1-207ENST00000467985 SLC17A1Q14916 467 aa16.84■□□□□ 0.29
COL7A1-207ENST00000467985 OR7E24Q6IFN5 339 aa16.84■□□□□ 0.29
COL7A1-207ENST00000467985 SEZ6L2Q6UXD5 910 aa16.84■□□□□ 0.29
COL7A1-207ENST00000467985 CLIP4Q8N3C7 705 aa16.84■□□□□ 0.29
COL7A1-207ENST00000467985 STON2Q8WXE9 905 aa16.84■□□□□ 0.29
COL7A1-207ENST00000467985 FBXW5Q969U6 566 aa16.84■□□□□ 0.29
COL7A1-207ENST00000467985 BDH2Q9BUT1 245 aa16.84■□□□□ 0.29
COL7A1-207ENST00000467985 SF3B5Q9BWJ5 86 aaKnown RBP16.84■□□□□ 0.29
COL7A1-207ENST00000467985 ZNF701Q9NV72 531 aaPredicted RBP16.84■□□□□ 0.29
COL7A1-207ENST00000467985 TAS2R16Q9NYV7 291 aa16.84■□□□□ 0.29
COL7A1-207ENST00000467985 FLVCR1Q9Y5Y0 555 aa16.84■□□□□ 0.29
COL7A1-207ENST00000467985 GMEB1Q9Y692 573 aa16.84■□□□□ 0.29
COL7A1-207ENST00000467985 CIB4A0PJX0 185 aa16.83■□□□□ 0.28
COL7A1-207ENST00000467985 LIPT2A6NK58 231 aa16.83■□□□□ 0.28
COL7A1-207ENST00000467985 CCT8L1PA6NM43 557 aa16.83■□□□□ 0.28
COL7A1-207ENST00000467985 RAMP1O60894 148 aa16.83■□□□□ 0.28
COL7A1-207ENST00000467985 IGHV3-9P01782 118 aa16.83■□□□□ 0.28
COL7A1-207ENST00000467985 NUDT7P0C024 238 aa16.83■□□□□ 0.28
COL7A1-207ENST00000467985 ETS2P15036 469 aa16.83■□□□□ 0.28
COL7A1-207ENST00000467985 CEACAM7Q14002 265 aa16.83■□□□□ 0.28
COL7A1-207ENST00000467985 SQLEQ14534 574 aa16.83■□□□□ 0.28
COL7A1-207ENST00000467985 ZNF672Q499Z4 452 aaPredicted RBP16.83■□□□□ 0.28
COL7A1-207ENST00000467985 OTUD3Q5T2D3 398 aaPredicted RBP16.83■□□□□ 0.28
COL7A1-207ENST00000467985 CASP12Q6UXS9 341 aa16.83■□□□□ 0.28
COL7A1-207ENST00000467985 KRT73Q86Y46 540 aa16.83■□□□□ 0.28
COL7A1-207ENST00000467985 MAL2Q969L2 176 aa16.83■□□□□ 0.28
COL7A1-207ENST00000467985 TAPBPLQ9BX59 468 aa16.83■□□□□ 0.28
COL7A1-207ENST00000467985 SLC25A37Q9NYZ2 338 aa16.83■□□□□ 0.28
COL7A1-207ENST00000467985 DPRXA6NFQ7 191 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms