RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 HNRNPCL2B2RXH8 293 aa12.31□□□□□ -0.44
USP4-206ENST00000461553 HNRNPCL3B7ZW38 293 aa12.31□□□□□ -0.44
USP4-206ENST00000461553 HNRNPCL1O60812 293 aaKnown RBP12.31□□□□□ -0.44
USP4-206ENST00000461553 RAMP1O60894 148 aa12.31□□□□□ -0.44
USP4-206ENST00000461553 TGDSO95455 350 aa12.31□□□□□ -0.44
USP4-206ENST00000461553 GPIP06744 558 aa12.31□□□□□ -0.44
USP4-206ENST00000461553 TFPTP0C1Z6 253 aa12.31□□□□□ -0.44
USP4-206ENST00000461553 HNRNPCL4P0DMR1 293 aa12.31□□□□□ -0.44
USP4-206ENST00000461553 IMPDH2P12268 514 aa12.31□□□□□ -0.44
USP4-206ENST00000461553 NCF2P19878 526 aaPredicted RBP12.31□□□□□ -0.44
USP4-206ENST00000461553 CDH11P55287 796 aa12.31□□□□□ -0.44
USP4-206ENST00000461553 LTBQ06643 244 aa12.31□□□□□ -0.44
USP4-206ENST00000461553 OTUD3Q5T2D3 398 aaPredicted RBP12.31□□□□□ -0.44
USP4-206ENST00000461553 WBP2NLQ6ICG8 309 aa12.31□□□□□ -0.44
USP4-206ENST00000461553 SLC2A7Q6PXP3 512 aa12.31□□□□□ -0.44
USP4-206ENST00000461553 PAQR6Q6TCH4 344 aa12.31□□□□□ -0.44
USP4-206ENST00000461553 Q71RC1 249 aaPredicted RBP12.31□□□□□ -0.44
USP4-206ENST00000461553 BBS10Q8TAM1 723 aa12.31□□□□□ -0.44
USP4-206ENST00000461553 GTPBP3Q969Y2 492 aaKnown RBP12.31□□□□□ -0.44
USP4-206ENST00000461553 TAPBPLQ9BX59 468 aa12.31□□□□□ -0.44
USP4-206ENST00000461553 ALG2Q9H553 416 aa12.31□□□□□ -0.44
USP4-206ENST00000461553 ZNF701Q9NV72 531 aaPredicted RBP12.31□□□□□ -0.44
USP4-206ENST00000461553 FAIMQ9NVQ4 179 aa12.31□□□□□ -0.44
USP4-206ENST00000461553 PRDM4Q9UKN5 801 aa12.31□□□□□ -0.44
USP4-206ENST00000461553 FN1P02751 2386 aaKnown RBP12.31□□□□□ -0.44
USP4-206ENST00000461553 CR1P17927 2039 aa12.3□□□□□ -0.44
USP4-206ENST00000461553 A0A096LPI6 279 aa12.3□□□□□ -0.44
USP4-206ENST00000461553 C5orf58C9J3I9 102 aa12.3□□□□□ -0.44
USP4-206ENST00000461553 CLIC1O00299 241 aa12.3□□□□□ -0.44
USP4-206ENST00000461553 NR5A2O00482 541 aa12.3□□□□□ -0.44
USP4-206ENST00000461553 ABCD4O14678 606 aa12.3□□□□□ -0.44
USP4-206ENST00000461553 SMAD7O15105 426 aaKnown RBP12.3□□□□□ -0.44
USP4-206ENST00000461553 PGM3O95394 542 aa12.3□□□□□ -0.44
USP4-206ENST00000461553 HOXB4P17483 251 aaPredicted RBP12.3□□□□□ -0.44
USP4-206ENST00000461553 MRPL19P49406 292 aaKnown RBP12.3□□□□□ -0.44
USP4-206ENST00000461553 H3F3AP84243 136 aa12.3□□□□□ -0.44
USP4-206ENST00000461553 FAPQ12884 760 aa12.3□□□□□ -0.44
USP4-206ENST00000461553 RGNQ15493 299 aa12.3□□□□□ -0.44
USP4-206ENST00000461553 OR7A5Q15622 319 aa12.3□□□□□ -0.44
USP4-206ENST00000461553 KLHL17Q6TDP4 642 aa12.3□□□□□ -0.44
USP4-206ENST00000461553 OR52N5Q8NH56 324 aa12.3□□□□□ -0.44
USP4-206ENST00000461553 SMAP2Q8WU79 429 aaPredicted RBP12.3□□□□□ -0.44
USP4-206ENST00000461553 GTF2H4Q92759 462 aa12.3□□□□□ -0.44
USP4-206ENST00000461553 NEUROG1Q92886 237 aa12.3□□□□□ -0.44
USP4-206ENST00000461553 TRMT61AQ96FX7 289 aaKnown RBP12.3□□□□□ -0.44
USP4-206ENST00000461553 ATP6V1G3Q96LB4 118 aa12.3□□□□□ -0.44
USP4-206ENST00000461553 SPATA9Q9BWV2 254 aa12.3□□□□□ -0.44
USP4-206ENST00000461553 TRIM2Q9C040 744 aa12.3□□□□□ -0.44
USP4-206ENST00000461553 ADAM19Q9H013 955 aa12.3□□□□□ -0.44
USP4-206ENST00000461553 PAIP1Q9H074 479 aaKnown RBP12.3□□□□□ -0.44
USP4-206ENST00000461553 A4GALTQ9NPC4 353 aa12.3□□□□□ -0.44
USP4-206ENST00000461553 SLCO1B3Q9NPD5 702 aa12.3□□□□□ -0.44
USP4-206ENST00000461553 PARPBPQ9NWS1 579 aa12.3□□□□□ -0.44
USP4-206ENST00000461553 NPAP1Q9NZP6 1156 aa12.3□□□□□ -0.44
USP4-206ENST00000461553 UPB1Q9UBR1 384 aa12.3□□□□□ -0.44
USP4-206ENST00000461553 ZNF232Q9UNY5 417 aa12.3□□□□□ -0.44
USP4-206ENST00000461553 IFT52Q9Y366 437 aa12.3□□□□□ -0.44
USP4-206ENST00000461553 PCDHB14Q9Y5E9 798 aa12.3□□□□□ -0.44
USP4-206ENST00000461553 MAGED1Q9Y5V3 778 aaPredicted RBP12.3□□□□□ -0.44
USP4-206ENST00000461553 FLVCR1Q9Y5Y0 555 aa12.3□□□□□ -0.44
USP4-206ENST00000461553 DPRXA6NFQ7 191 aa12.29□□□□□ -0.44
USP4-206ENST00000461553 LIPT2A6NK58 231 aa12.29□□□□□ -0.44
USP4-206ENST00000461553 FRS3O43559 492 aa12.29□□□□□ -0.44
USP4-206ENST00000461553 SOD3P08294 240 aa12.29□□□□□ -0.44
USP4-206ENST00000461553 ITGA5P08648 1049 aa12.29□□□□□ -0.44
USP4-206ENST00000461553 ACAA2P42765 397 aaKnown RBP12.29□□□□□ -0.44
USP4-206ENST00000461553 CEACAM7Q14002 265 aa12.29□□□□□ -0.44
USP4-206ENST00000461553 ETFDHQ16134 617 aa12.29□□□□□ -0.44
USP4-206ENST00000461553 ZNF311Q5JNZ3 666 aa12.29□□□□□ -0.44
USP4-206ENST00000461553 GCNT6Q5T4J0 391 aa12.29□□□□□ -0.44
USP4-206ENST00000461553 PRAMEF8Q5VWM4 474 aa12.29□□□□□ -0.44
USP4-206ENST00000461553 PRAMEF7Q5VXH5 474 aa12.29□□□□□ -0.44
USP4-206ENST00000461553 OR7E24Q6IFN5 339 aa12.29□□□□□ -0.44
USP4-206ENST00000461553 TMEM108Q6UXF1 575 aa12.29□□□□□ -0.44
USP4-206ENST00000461553 SERPINA11Q86U17 422 aa12.29□□□□□ -0.44
USP4-206ENST00000461553 GPAT4Q86UL3 456 aa12.29□□□□□ -0.44
USP4-206ENST00000461553 LSRQ86X29 649 aaPredicted RBP12.29□□□□□ -0.44
USP4-206ENST00000461553 PIAS4Q8N2W9 510 aaPredicted RBP12.29□□□□□ -0.44
USP4-206ENST00000461553 CIARTQ8N365 385 aaPredicted RBP12.29□□□□□ -0.44
USP4-206ENST00000461553 OR52E4Q8NGH9 312 aa12.29□□□□□ -0.44
USP4-206ENST00000461553 LILRB1Q8NHL6 650 aaPredicted RBP12.29□□□□□ -0.44
USP4-206ENST00000461553 TMEM45BQ96B21 275 aa12.29□□□□□ -0.44
USP4-206ENST00000461553 SPDL1Q96EA4 605 aa12.29□□□□□ -0.44
USP4-206ENST00000461553 EBF4Q9BQW3 602 aa12.29□□□□□ -0.44
USP4-206ENST00000461553 CCDC28BQ9BUN5 200 aa12.29□□□□□ -0.44
USP4-206ENST00000461553 ADPRHL2Q9NX46 363 aa12.29□□□□□ -0.44
USP4-206ENST00000461553 CCDC167Q9P0B6 97 aa12.29□□□□□ -0.44
USP4-206ENST00000461553 DCTN4Q9UJW0 460 aa12.29□□□□□ -0.44
USP4-206ENST00000461553 ABCA2Q9BZC7 2435 aa12.29□□□□□ -0.44
USP4-206ENST00000461553 AQP7P3A6NL99 342 aa12.28□□□□□ -0.44
USP4-206ENST00000461553 A8MVM7 634 aa12.28□□□□□ -0.44
USP4-206ENST00000461553 AKR7A3O95154 331 aa12.28□□□□□ -0.44
USP4-206ENST00000461553 NUDT7P0C024 238 aa12.28□□□□□ -0.44
USP4-206ENST00000461553 DANCRP0C864 163 aa12.28□□□□□ -0.44
USP4-206ENST00000461553 BMP2P12643 396 aa12.28□□□□□ -0.44
USP4-206ENST00000461553 PPIBP23284 216 aaKnown RBP12.28□□□□□ -0.44
USP4-206ENST00000461553 GTF2E2P29084 291 aaKnown RBP12.28□□□□□ -0.44
USP4-206ENST00000461553 CDKN1AP38936 164 aa12.28□□□□□ -0.44
USP4-206ENST00000461553 IDH3AP50213 366 aa12.28□□□□□ -0.44
USP4-206ENST00000461553 AQP5P55064 265 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms