RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 H3BML4 177 aa9.9□□□□□ -0.82
SCN9A-205ENST00000454569 KLRC4-KLRK1H3BQV0 150 aa9.9□□□□□ -0.82
SCN9A-205ENST00000454569 CDK2AP1O14519 115 aa9.9□□□□□ -0.82
SCN9A-205ENST00000454569 SOX14O95416 240 aa9.9□□□□□ -0.82
SCN9A-205ENST00000454569 IMPDH2P12268 514 aa9.9□□□□□ -0.82
SCN9A-205ENST00000454569 UQCRBP14927 111 aa9.9□□□□□ -0.82
SCN9A-205ENST00000454569 KLK2P20151 261 aa9.9□□□□□ -0.82
SCN9A-205ENST00000454569 CXCR1P25024 350 aa9.9□□□□□ -0.82
SCN9A-205ENST00000454569 SRD5A2P31213 254 aa9.9□□□□□ -0.82
SCN9A-205ENST00000454569 RPS5P46782 204 aaKnown RBP9.9□□□□□ -0.82
SCN9A-205ENST00000454569 GSSP48637 474 aa9.9□□□□□ -0.82
SCN9A-205ENST00000454569 ARHGDIAP52565 204 aa9.9□□□□□ -0.82
SCN9A-205ENST00000454569 CLDN15P56746 228 aa9.9□□□□□ -0.82
SCN9A-205ENST00000454569 PPIAP62937 165 aaKnown RBP9.9□□□□□ -0.82
SCN9A-205ENST00000454569 IL1RL1Q01638 556 aa9.9□□□□□ -0.82
SCN9A-205ENST00000454569 ZNF295-AS1Q8N0V1 137 aa9.9□□□□□ -0.82
SCN9A-205ENST00000454569 TMEM178AQ8NBL3 297 aa9.9□□□□□ -0.82
SCN9A-205ENST00000454569 TMEM234Q8WY98 164 aa9.9□□□□□ -0.82
SCN9A-205ENST00000454569 BPIFA2Q96DR5 249 aa9.9□□□□□ -0.82
SCN9A-205ENST00000454569 ITPKCQ96DU7 683 aa9.9□□□□□ -0.82
SCN9A-205ENST00000454569 MRGPRX4Q96LA9 322 aa9.9□□□□□ -0.82
SCN9A-205ENST00000454569 OR2B2Q9GZK3 357 aa9.9□□□□□ -0.82
SCN9A-205ENST00000454569 SLC6A15Q9H2J7 730 aa9.9□□□□□ -0.82
SCN9A-205ENST00000454569 USE1Q9NZ43 259 aa9.9□□□□□ -0.82
SCN9A-205ENST00000454569 TNFRSF10DQ9UBN6 386 aa9.9□□□□□ -0.82
SCN9A-205ENST00000454569 DKKL1Q9UK85 242 aa9.9□□□□□ -0.82
SCN9A-205ENST00000454569 RAB26Q9ULW5 256 aa9.9□□□□□ -0.82
SCN9A-205ENST00000454569 MED12LQ86YW9 2145 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 TRAV17A0A0B4J275 112 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 CLIC3O95833 236 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 CH25HO95992 272 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 BGLAPP02818 100 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 HPNP05981 417 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 RPSAP08865 295 aaKnown RBP9.89□□□□□ -0.83
SCN9A-205ENST00000454569 PNMTP11086 282 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 IFNA8P32881 189 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 APOBEC1P41238 236 aaKnown RBP9.89□□□□□ -0.83
SCN9A-205ENST00000454569 RBM34P42696 430 aaKnown RBP9.89□□□□□ -0.83
SCN9A-205ENST00000454569 GFRA1P56159 465 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 CTBP2P56545 445 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 PSMA6P60900 246 aaKnown RBP9.89□□□□□ -0.83
SCN9A-205ENST00000454569 PLGLB1Q02325 96 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 ZNF169Q14929 603 aaPredicted RBP9.89□□□□□ -0.83
SCN9A-205ENST00000454569 HYAL4Q2M3T9 481 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 NHSL2Q5HYW2 709 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 RAET1LQ5VY80 246 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 ASB18Q6ZVZ8 466 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 TRILQ7L0X0 811 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 GTPBP8Q8N3Z3 284 aaPredicted RBP9.89□□□□□ -0.83
SCN9A-205ENST00000454569 Q8NA96 180 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 OR8D4Q8NGM9 314 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 OR13C2Q8NGS9 318 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 OR14L1PQ8NHC6 308 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 PIGXQ8TBF5 258 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 HS6ST2Q96MM7 605 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 TMEM43Q9BTV4 400 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 DGCR6LQ9BY27 220 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 PLA2G12AQ9BZM1 189 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 TOR3AQ9H497 397 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 EGLN3Q9H6Z9 239 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 C12orf10Q9HB07 376 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 SELENONQ9NZV5 590 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 CHRNA9Q9UGM1 479 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 IL20RAQ9UHF4 553 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 MED31Q9Y3C7 131 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 PCDHGB6Q9Y5F9 930 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 PCDHGB5Q9Y5G0 923 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 AP4B1Q9Y6B7 739 aa9.89□□□□□ -0.83
SCN9A-205ENST00000454569 TRAV27A0A087WT01 109 aa9.88□□□□□ -0.83
SCN9A-205ENST00000454569 ARRDC5A6NEK1 342 aa9.88□□□□□ -0.83
SCN9A-205ENST00000454569 E9PQ18 207 aa9.88□□□□□ -0.83
SCN9A-205ENST00000454569 PTP4A3O75365 173 aa9.88□□□□□ -0.83
SCN9A-205ENST00000454569 ANXA8P13928 327 aa9.88□□□□□ -0.83
SCN9A-205ENST00000454569 IGFBP5P24593 272 aa9.88□□□□□ -0.83
SCN9A-205ENST00000454569 SFTPDP35247 375 aa9.88□□□□□ -0.83
SCN9A-205ENST00000454569 SUCLG1P53597 346 aaKnown RBP9.88□□□□□ -0.83
SCN9A-205ENST00000454569 CLDN20P56880 219 aa9.88□□□□□ -0.83
SCN9A-205ENST00000454569 DBPQ10586 325 aaPredicted RBP9.88□□□□□ -0.83
SCN9A-205ENST00000454569 MED21Q13503 144 aa9.88□□□□□ -0.83
SCN9A-205ENST00000454569 C6orf52Q5T4I8 152 aa9.88□□□□□ -0.83
SCN9A-205ENST00000454569 C1orf140Q5VVS0 124 aa9.88□□□□□ -0.83
SCN9A-205ENST00000454569 TMEM236Q5W0B7 351 aa9.88□□□□□ -0.83
SCN9A-205ENST00000454569 SLC6A19Q695T7 634 aa9.88□□□□□ -0.83
SCN9A-205ENST00000454569 PCSK4Q6UW60 755 aa9.88□□□□□ -0.83
SCN9A-205ENST00000454569 PLXDC2Q6UX71 529 aa9.88□□□□□ -0.83
SCN9A-205ENST00000454569 TMPRSS11FQ6ZWK6 438 aa9.88□□□□□ -0.83
SCN9A-205ENST00000454569 RRM2BQ7LG56 351 aa9.88□□□□□ -0.83
SCN9A-205ENST00000454569 RNF113BQ8IZP6 322 aaKnown RBP9.88□□□□□ -0.83
SCN9A-205ENST00000454569 GNPDA2Q8TDQ7 276 aa9.88□□□□□ -0.83
SCN9A-205ENST00000454569 ZBTB8AQ96BR9 441 aa9.88□□□□□ -0.83
SCN9A-205ENST00000454569 TNFRSF13CQ96RJ3 184 aa9.88□□□□□ -0.83
SCN9A-205ENST00000454569 RBM4BQ9BQ04 359 aaKnown RBP9.88□□□□□ -0.83
SCN9A-205ENST00000454569 RBM4Q9BWF3 364 aaKnown RBP9.88□□□□□ -0.83
SCN9A-205ENST00000454569 UCK2Q9BZX2 261 aa9.88□□□□□ -0.83
SCN9A-205ENST00000454569 KRT84Q9NSB2 600 aa9.88□□□□□ -0.83
SCN9A-205ENST00000454569 SMPD3Q9NY59 655 aaPredicted RBP9.88□□□□□ -0.83
SCN9A-205ENST00000454569 MGAT4BQ9UQ53 548 aa9.88□□□□□ -0.83
SCN9A-205ENST00000454569 FREM1Q5H8C1 2179 aa9.88□□□□□ -0.83
SCN9A-205ENST00000454569 A0A087WZY1 265 aa9.88□□□□□ -0.83
SCN9A-205ENST00000454569 A0A0J9YW62 118 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms