RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 MAL2Q969L2 176 aa17.12■□□□□ 0.33
USP40-207ENST00000450940 DNAJA3Q96EY1 480 aa17.12■□□□□ 0.33
USP40-207ENST00000450940 MAGEB18Q96M61 343 aa17.12■□□□□ 0.33
USP40-207ENST00000450940 RSPO3Q9BXY4 272 aaPredicted RBP17.12■□□□□ 0.33
USP40-207ENST00000450940 GSX2Q9BZM3 304 aa17.12■□□□□ 0.33
USP40-207ENST00000450940 ESRP2Q9H6T0 727 aaKnown RBP17.12■□□□□ 0.33
USP40-207ENST00000450940 ZNF701Q9NV72 531 aaPredicted RBP17.12■□□□□ 0.33
USP40-207ENST00000450940 MALT1Q9UDY8 824 aa17.12■□□□□ 0.33
USP40-207ENST00000450940 RNF115Q9Y4L5 304 aa17.12■□□□□ 0.33
USP40-207ENST00000450940 FLVCR1Q9Y5Y0 555 aa17.12■□□□□ 0.33
USP40-207ENST00000450940 LIPT2A6NK58 231 aa17.11■□□□□ 0.33
USP40-207ENST00000450940 NPIPB7O75200 414 aa17.11■□□□□ 0.33
USP40-207ENST00000450940 MRPL33O75394 65 aaKnown RBP17.11■□□□□ 0.33
USP40-207ENST00000450940 ARAFP10398 606 aa17.11■□□□□ 0.33
USP40-207ENST00000450940 ETS2P15036 469 aa17.11■□□□□ 0.33
USP40-207ENST00000450940 GPX2P18283 190 aa17.11■□□□□ 0.33
USP40-207ENST00000450940 GGT1P19440 569 aa17.11■□□□□ 0.33
USP40-207ENST00000450940 PPIBP23284 216 aaKnown RBP17.11■□□□□ 0.33
USP40-207ENST00000450940 IDUAP35475 653 aa17.11■□□□□ 0.33
USP40-207ENST00000450940 COPZ1P61923 177 aa17.11■□□□□ 0.33
USP40-207ENST00000450940 ZNF311Q5JNZ3 666 aa17.11■□□□□ 0.33
USP40-207ENST00000450940 Q5PR19 223 aa17.11■□□□□ 0.33
USP40-207ENST00000450940 P3H2Q8IVL5 708 aa17.11■□□□□ 0.33
USP40-207ENST00000450940 AKAP1Q92667 903 aaKnown RBP eCLIP17.11■□□□□ 0.33
USP40-207ENST00000450940 PIF1Q9H611 641 aa17.11■□□□□ 0.33
USP40-207ENST00000450940 ARGLU1Q9NWB6 273 aaPredicted RBP17.11■□□□□ 0.33
USP40-207ENST00000450940 PARPBPQ9NWS1 579 aa17.11■□□□□ 0.33
USP40-207ENST00000450940 VAPAQ9P0L0 249 aa17.11■□□□□ 0.33
USP40-207ENST00000450940 A0A1W2PP18 115 aa17.1■□□□□ 0.33
USP40-207ENST00000450940 DPRXA6NFQ7 191 aa17.1■□□□□ 0.33
USP40-207ENST00000450940 OR5H1A6NKK0 313 aa17.1■□□□□ 0.33
USP40-207ENST00000450940 A8MVM7 634 aa17.1■□□□□ 0.33
USP40-207ENST00000450940 PDLIM1O00151 329 aa17.1■□□□□ 0.33
USP40-207ENST00000450940 NR5A2O00482 541 aa17.1■□□□□ 0.33
USP40-207ENST00000450940 GPIP06744 558 aa17.1■□□□□ 0.33
USP40-207ENST00000450940 CD3EP07766 207 aa17.1■□□□□ 0.33
USP40-207ENST00000450940 CEACAM7Q14002 265 aa17.1■□□□□ 0.33
USP40-207ENST00000450940 SQLEQ14534 574 aa17.1■□□□□ 0.33
USP40-207ENST00000450940 PPA1Q15181 289 aa17.1■□□□□ 0.33
USP40-207ENST00000450940 AGKQ53H12 422 aa17.1■□□□□ 0.33
USP40-207ENST00000450940 SERPINA11Q86U17 422 aa17.1■□□□□ 0.33
USP40-207ENST00000450940 LSRQ86X29 649 aaPredicted RBP17.1■□□□□ 0.33
USP40-207ENST00000450940 C10orf111Q8N326 155 aa17.1■□□□□ 0.33
USP40-207ENST00000450940 CADM2Q8N3J6 435 aa17.1■□□□□ 0.33
USP40-207ENST00000450940 C3orf49Q96BT1 292 aa17.1■□□□□ 0.33
USP40-207ENST00000450940 MUCL1Q96DR8 90 aa17.1■□□□□ 0.33
USP40-207ENST00000450940 C18orf12Q96KH6 178 aa17.1■□□□□ 0.33
USP40-207ENST00000450940 SF3B5Q9BWJ5 86 aaKnown RBP17.1■□□□□ 0.33
USP40-207ENST00000450940 RABEP2Q9H5N1 569 aa17.1■□□□□ 0.33
USP40-207ENST00000450940 CACYBPQ9HB71 228 aaKnown RBP17.1■□□□□ 0.33
USP40-207ENST00000450940 ASB6Q9NWX5 421 aa17.1■□□□□ 0.33
USP40-207ENST00000450940 SLC9A8Q9Y2E8 581 aa17.1■□□□□ 0.33
USP40-207ENST00000450940 USF3Q68DE3 2245 aa17.09■□□□□ 0.33
USP40-207ENST00000450940 AQP7P3A6NL99 342 aa17.09■□□□□ 0.33
USP40-207ENST00000450940 TMEM229AB2RXF0 380 aa17.09■□□□□ 0.33
USP40-207ENST00000450940 ADSLP30566 484 aaPredicted RBP17.09■□□□□ 0.33
USP40-207ENST00000450940 PRKAR1BP31321 381 aa17.09■□□□□ 0.33
USP40-207ENST00000450940 BSPH1Q075Z2 132 aa17.09■□□□□ 0.33
USP40-207ENST00000450940 CAPRIN1Q14444 709 aaKnown RBP17.09■□□□□ 0.33
USP40-207ENST00000450940 ALKBH2Q6NS38 261 aa17.09■□□□□ 0.33
USP40-207ENST00000450940 DLEU7Q6UYE1 221 aa17.09■□□□□ 0.33
USP40-207ENST00000450940 ATG4DQ86TL0 474 aaPredicted RBP17.09■□□□□ 0.33
USP40-207ENST00000450940 BIVMQ86UB2 503 aa17.09■□□□□ 0.33
USP40-207ENST00000450940 UBE2J2Q8N2K1 259 aa17.09■□□□□ 0.33
USP40-207ENST00000450940 TMEM99Q8N816 258 aa17.09■□□□□ 0.33
USP40-207ENST00000450940 ZIC4Q8N9L1 334 aa17.09■□□□□ 0.33
USP40-207ENST00000450940 TMEM171Q8WVE6 324 aa17.09■□□□□ 0.33
USP40-207ENST00000450940 TMEM45BQ96B21 275 aa17.09■□□□□ 0.33
USP40-207ENST00000450940 MUS81Q96NY9 551 aa17.09■□□□□ 0.33
USP40-207ENST00000450940 AMBRA1Q9C0C7 1298 aa17.09■□□□□ 0.33
USP40-207ENST00000450940 GSX1Q9H4S2 264 aaPredicted RBP17.09■□□□□ 0.33
USP40-207ENST00000450940 IKZF5Q9H5V7 419 aa17.09■□□□□ 0.33
USP40-207ENST00000450940 ZNF385DQ9H6B1 395 aa17.09■□□□□ 0.33
USP40-207ENST00000450940 TMEM38AQ9H6F2 299 aa17.09■□□□□ 0.33
USP40-207ENST00000450940 C5orf58C9J3I9 102 aa17.08■□□□□ 0.32
USP40-207ENST00000450940 IGHV3-9P01782 118 aa17.08■□□□□ 0.32
USP40-207ENST00000450940 DANCRP0C864 163 aa17.08■□□□□ 0.32
USP40-207ENST00000450940 NCF2P19878 526 aaPredicted RBP17.08■□□□□ 0.32
USP40-207ENST00000450940 PTH2RP49190 550 aa17.08■□□□□ 0.32
USP40-207ENST00000450940 P2RY4P51582 365 aa17.08■□□□□ 0.32
USP40-207ENST00000450940 BNIP2Q12982 314 aa17.08■□□□□ 0.32
USP40-207ENST00000450940 STK11Q15831 433 aa17.08■□□□□ 0.32
USP40-207ENST00000450940 GABRA6Q16445 453 aa17.08■□□□□ 0.32
USP40-207ENST00000450940 OTUD3Q5T2D3 398 aaPredicted RBP17.08■□□□□ 0.32
USP40-207ENST00000450940 GCNT6Q5T4J0 391 aa17.08■□□□□ 0.32
USP40-207ENST00000450940 C1orf140Q5VVS0 124 aa17.08■□□□□ 0.32
USP40-207ENST00000450940 REEP3Q6NUK4 255 aa17.08■□□□□ 0.32
USP40-207ENST00000450940 STK35Q8TDR2 534 aa17.08■□□□□ 0.32
USP40-207ENST00000450940 PERPQ96FX8 193 aa17.08■□□□□ 0.32
USP40-207ENST00000450940 TAS2R16Q9NYV7 291 aa17.08■□□□□ 0.32
USP40-207ENST00000450940 CORO2BQ9UQ03 480 aa17.08■□□□□ 0.32
USP40-207ENST00000450940 OVOL3O00110 214 aa17.07■□□□□ 0.32
USP40-207ENST00000450940 FRS3O43559 492 aa17.07■□□□□ 0.32
USP40-207ENST00000450940 EDF1O60869 148 aaKnown RBP17.07■□□□□ 0.32
USP40-207ENST00000450940 FZD7O75084 574 aa17.07■□□□□ 0.32
USP40-207ENST00000450940 AKR7A3O95154 331 aa17.07■□□□□ 0.32
USP40-207ENST00000450940 ITGA5P08648 1049 aa17.07■□□□□ 0.32
USP40-207ENST00000450940 INHBBP09529 407 aa17.07■□□□□ 0.32
USP40-207ENST00000450940 FOXG1P55316 489 aaPredicted RBP17.07■□□□□ 0.32
USP40-207ENST00000450940 CDK6Q00534 326 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms