RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 LOC730098B7Z3J9 87 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 TFPTP0C1Z6 253 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 EDNRBP24530 442 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 ABCD3P28288 659 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 KIR2DS3Q14952 304 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 ATPAF1Q5TC12 328 aaPredicted RBP6.73□□□□□ -1.33
VPS53-204ENST00000437048 TAS1R3Q7RTX0 852 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 OR4K15Q8NH41 348 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 EMG1Q92979 244 aaKnown RBP6.73□□□□□ -1.33
VPS53-204ENST00000437048 RPUSD4Q96CM3 377 aaKnown RBP6.73□□□□□ -1.33
VPS53-204ENST00000437048 PKMYT1Q99640 499 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 C20orf85Q9H1P6 137 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 RANGRFQ9HD47 186 aaPredicted RBP6.73□□□□□ -1.33
VPS53-204ENST00000437048 OR6C2Q9NZP2 312 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 PIK3C2AO00443 1686 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 CXorf49A8MYA2 514 aaPredicted RBP6.73□□□□□ -1.33
VPS53-204ENST00000437048 OPN1MWP04001 364 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 OPN1MW2P0DN77 364 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 OPN1MW3P0DN78 364 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 SHDQ96IW2 340 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 ESRP2Q9H6T0 727 aaKnown RBP6.73□□□□□ -1.33
VPS53-204ENST00000437048 RAB18Q9NP72 206 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 PLEK2Q9NYT0 353 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 CXXC1Q9P0U4 656 aaPredicted RBP6.73□□□□□ -1.33
VPS53-204ENST00000437048 B3GAT1Q9P2W7 334 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 A8MV72 311 aaPredicted RBP6.73□□□□□ -1.33
VPS53-204ENST00000437048 PSMD9O00233 223 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 LILRB3O75022 631 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 DUSP1P28562 367 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 HOXA1P49639 335 aaPredicted RBP6.73□□□□□ -1.33
VPS53-204ENST00000437048 MAN2A2P49641 1150 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 ZNF239Q16600 458 aaKnown RBP6.73□□□□□ -1.33
VPS53-204ENST00000437048 SEZ6L2Q6UXD5 910 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 LMLNQ96KR4 655 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 FAM74A7A6NL05 159 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 SEC14L6B5MCN3 397 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 ADORA3P0DMS8 318 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 ZNF91Q05481 1191 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 RGNQ15493 299 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 PNLIPRP3Q17RR3 467 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 SFXN4Q6P4A7 337 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 DPH2Q9BQC3 489 aaPredicted RBP6.73□□□□□ -1.33
VPS53-204ENST00000437048 GALTP07902 379 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 BTF3P20290 206 aaKnown RBP6.73□□□□□ -1.33
VPS53-204ENST00000437048 LSSP48449 732 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 RPS21P63220 83 aaKnown RBP6.73□□□□□ -1.33
VPS53-204ENST00000437048 LTBQ06643 244 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 ELFN2Q5R3F8 820 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 LANCL3Q6ZV70 420 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 PARGQ86W56 976 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 OR4C5Q8NGB2 326 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 OR51Q1Q8NH59 317 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 TFAP2BQ92481 460 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 METTL7AQ9H8H3 244 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 GPR34Q9UPC5 381 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 YJEFN3A6XGL0 299 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 ZNF26P17031 533 aaPredicted RBP6.73□□□□□ -1.33
VPS53-204ENST00000437048 DIO3P55073 304 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 HYAL4Q2M3T9 481 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 LBX2Q6XYB7 198 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 ERASQ7Z444 233 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 SMPDL3BQ92485 455 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 LOC100289279A0A1B0GTE1 492 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 OR2A25A4D2G3 310 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 G3V2L1 256 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 ASGR2P07307 311 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 TMEM225Q6GV28 225 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 CAMKMTQ7Z624 323 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 ZNF439Q8NDP4 499 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 TMEM59Q9BXS4 323 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 NTN4Q9HB63 628 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 STEAP1Q9UHE8 339 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 ZFP37Q9Y6Q3 630 aaPredicted RBP6.73□□□□□ -1.33
VPS53-204ENST00000437048 SELENOFO60613 162 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 ADPRMQ3LIE5 342 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 FAM26EQ8N5C1 309 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 TMEM43Q9BTV4 400 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 PLEKHF2Q9H8W4 249 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 GLTPD2A6NH11 291 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 ACOD1A6NK06 481 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 GLOD5A6NK44 160 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 SIX3O95343 332 aaPredicted RBP6.73□□□□□ -1.33
VPS53-204ENST00000437048 BPHLQ86WA6 291 aaPredicted RBP6.73□□□□□ -1.33
VPS53-204ENST00000437048 TMEM19Q96HH6 336 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 CABLES2Q9BTV7 478 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 FBXL3Q9UKT7 428 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 SRPK3Q9UPE1 567 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 PCDHGA6Q9Y5G7 932 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 ATG2BQ96BY7 2078 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 IGKV6D-41A0A0C4DH26 115 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 CD8B2A6NJW9 211 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 LGALS8O00214 317 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 CD8BP10966 210 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 BMP4P12644 408 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 CAMK2BQ13554 666 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 BCL7AQ4VC05 210 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 EEF1DP3Q658K8 133 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 GALNT16Q8N428 558 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 DYNC2LI1Q8TCX1 351 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 SLC6A18Q96N87 628 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms