RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 CSO75390 466 aaKnown RBP3.53□□□□□ -1.84
HMGB3-203ENST00000430118 KHDRBS3O75525 346 aaKnown RBP3.53□□□□□ -1.84
HMGB3-203ENST00000430118 KRT36O76013 467 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 NDUFA7O95182 113 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 NADKO95544 446 aaPredicted RBP3.53□□□□□ -1.84
HMGB3-203ENST00000430118 SEMA4FO95754 770 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 EML2O95834 649 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 ASS1P00966 412 aaKnown RBP3.53□□□□□ -1.84
HMGB3-203ENST00000430118 IFNA14P01570 189 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 IGLV3-19P01714 112 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 ATP1A1P05023 1023 aaKnown RBP3.53□□□□□ -1.84
HMGB3-203ENST00000430118 IGKV2-30P06310 120 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 GP1BAP07359 652 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 KRT7P08729 469 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 FAM228BP0C875 321 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 GPR89BP0CG08 455 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 FAM157CP0CG43 387 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 CXCL8P10145 99 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 HMGA1P17096 107 aaKnown RBP3.53□□□□□ -1.84
HMGB3-203ENST00000430118 AMD1P17707 334 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 TCP1P17987 556 aaKnown RBP3.53□□□□□ -1.84
HMGB3-203ENST00000430118 RPL35AP18077 110 aaKnown RBP3.53□□□□□ -1.84
HMGB3-203ENST00000430118 GLRA1P23415 457 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 CSNK1EP49674 416 aaKnown RBP3.53□□□□□ -1.84
HMGB3-203ENST00000430118 THBS3P49746 956 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 DUSP3P51452 185 aaPredicted RBP3.53□□□□□ -1.84
HMGB3-203ENST00000430118 TPMTP51580 245 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 ARFIP1P53367 373 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 AP1S2P56377 157 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 VBP1P61758 197 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 SLC7A9P82251 487 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 IL9RQ01113 521 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 ZNF33BQ06732 778 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 ENPEPQ07075 957 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 ASPHQ12797 758 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 OVGP1Q12889 678 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 EFTUD2Q15029 972 aaKnown RBP eCLIP3.53□□□□□ -1.84
HMGB3-203ENST00000430118 TAB1Q15750 504 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 KRTAP21-3Q3LHN1 58 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 KIAA1644Q3SXP7 199 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 LRRC37A5PQ49AS3 106 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 AGKQ53H12 422 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 TCHHL1Q5QJ38 904 aaPredicted RBP3.53□□□□□ -1.84
HMGB3-203ENST00000430118 ATAD3BQ5T9A4 648 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 DDI2Q5TDH0 399 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 AGAP7PQ5VUJ5 663 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 RTL6Q6ICC9 239 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 CAPN13Q6MZZ7 669 aaPredicted RBP3.53□□□□□ -1.84
HMGB3-203ENST00000430118 RBMS3Q6XE24 437 aaKnown RBP3.53□□□□□ -1.84
HMGB3-203ENST00000430118 LINC00299Q6ZSB3 139 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 TMEM26Q6ZUK4 368 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 C9orf139Q6ZV77 190 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 PEX26Q7Z412 305 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 HDDC2Q7Z4H3 204 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 TRPT1Q86TN4 253 aaKnown RBP3.53□□□□□ -1.84
HMGB3-203ENST00000430118 CENPLQ8N0S6 344 aaPredicted RBP3.53□□□□□ -1.84
HMGB3-203ENST00000430118 TMEM86AQ8N2M4 240 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 LIX1Q8N485 282 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 OR10T2Q8NGX3 314 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 TMEM45BQ96B21 275 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 SENP5Q96HI0 755 aaPredicted RBP3.53□□□□□ -1.84
HMGB3-203ENST00000430118 ZNF354BQ96LW1 612 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 RANBP9Q96S59 729 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 HSD17B14Q9BPX1 270 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 DCTN5Q9BTE1 182 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 C9orf16Q9BUW7 83 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 MRPL13Q9BYD1 178 aaKnown RBP3.53□□□□□ -1.84
HMGB3-203ENST00000430118 RAB34Q9BZG1 259 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 EGLN1Q9GZT9 426 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 WWP1Q9H0M0 922 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 LHX5Q9H2C1 402 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 FNDC4Q9H6D8 234 aaPredicted RBP3.53□□□□□ -1.84
HMGB3-203ENST00000430118 ZNF696Q9H7X3 374 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 SGK2Q9HBY8 427 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 TM9SF3Q9HD45 589 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 SIX2Q9NPC8 291 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 SPHK2Q9NRA0 654 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 MAN2C1Q9NTJ4 1040 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 INTS9Q9NV88 658 aaKnown RBP3.53□□□□□ -1.84
HMGB3-203ENST00000430118 TECRQ9NZ01 308 aaKnown RBP3.53□□□□□ -1.84
HMGB3-203ENST00000430118 COX16Q9P0S2 106 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 TAAR2Q9P1P5 351 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 RSL24D1Q9UHA3 163 aaKnown RBP3.53□□□□□ -1.84
HMGB3-203ENST00000430118 ZNF175Q9Y473 711 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 PCDHGB1Q9Y5G3 927 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 COL12A1Q99715 3063 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 ABCA7Q8IZY2 2146 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 HELZP42694 1942 aaKnown RBP3.52□□□□□ -1.85
HMGB3-203ENST00000430118 PTPRJQ12913 1337 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 TRBV4-1A0A0J9YWV2 114 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 A0A1B0GUV1 79 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 IQCMA0A1B0GVH7 501 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 MSGN1A6NI15 193 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 ANKRD30BLA7E2S9 258 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 A8MUI8 341 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 NEDD8-MDP1E9PL57 170 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 GOLGA8SH3BPF8 625 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 KPNA4O00629 521 aaPredicted RBP3.52□□□□□ -1.85
HMGB3-203ENST00000430118 MLNRO43193 412 aa3.52□□□□□ -1.85
HMGB3-203ENST00000430118 CACNG3O60359 315 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms